mRNA_H-elongata_contig79646.15617.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig79646.15617.1
Unique NamemRNA_H-elongata_contig79646.15617.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig79646.15617.1 vs. uniprot
Match: A0A6H5KHP7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHP7_9PHAE)

HSP 1 Score: 116 bits (291), Expect = 4.290e-29
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 1 
Query:    4 KGKVFTEEEDAFLLNMMHRYGYGNWEVIRMEIRKAWQFRFDWFFKSRNAAEL 159
            KGKVFTEEEDAFLLNMMHRYGYGNWEVIRMEIRKAWQFRFDWFFKSRNAAEL
Sbjct:  998 KGKVFTEEEDAFLLNMMHRYGYGNWEVIRMEIRKAWQFRFDWFFKSRNAAEL 1049
[Close]
BLAST of mRNA_H-elongata_contig79646.15617.1 vs. uniprot
Match: D8LDI0_ECTSI (Ci-SWI/SNF n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDI0_ECTSI)

HSP 1 Score: 116 bits (291), Expect = 4.290e-29
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 1 
Query:    4 KGKVFTEEEDAFLLNMMHRYGYGNWEVIRMEIRKAWQFRFDWFFKSRNAAEL 159
            KGKVFTEEEDAFLLNMMHRYGYGNWEVIRMEIRKAWQFRFDWFFKSRNAAEL
Sbjct:  964 KGKVFTEEEDAFLLNMMHRYGYGNWEVIRMEIRKAWQFRFDWFFKSRNAAEL 1015
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BLAST of mRNA_H-elongata_contig79646.15617.1 vs. uniprot
Match: A0A835ZE29_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZE29_9STRA)

HSP 1 Score: 106 bits (265), Expect = 1.400e-25
Identity = 45/52 (86.54%), Postives = 49/52 (94.23%), Query Frame = 1 
Query:    4 KGKVFTEEEDAFLLNMMHRYGYGNWEVIRMEIRKAWQFRFDWFFKSRNAAEL 159
            KGK +TEEEDAFL+NMMHRYGYGNWEVIR +I+KAWQF FDWFFKSRNAAEL
Sbjct:  873 KGKTYTEEEDAFLINMMHRYGYGNWEVIRTQIKKAWQFHFDWFFKSRNAAEL 924
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BLAST of mRNA_H-elongata_contig79646.15617.1 vs. uniprot
Match: A0A7S4E930_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E930_9STRA)

HSP 1 Score: 102 bits (254), Expect = 1.660e-25
Identity = 44/53 (83.02%), Postives = 49/53 (92.45%), Query Frame = 1 
Query:    1 NKGKVFTEEEDAFLLNMMHRYGYGNWEVIRMEIRKAWQFRFDWFFKSRNAAEL 159
            ++GKV+TEEEDAFLLNMMH YGYGNWE IR+EIR AWQF FDWFFKSRNA+EL
Sbjct:  129 SRGKVWTEEEDAFLLNMMHTYGYGNWERIRVEIRNAWQFNFDWFFKSRNASEL 181
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BLAST of mRNA_H-elongata_contig79646.15617.1 vs. uniprot
Match: A0A8J2SZN3_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SZN3_9STRA)

HSP 1 Score: 102 bits (254), Expect = 4.290e-24
Identity = 44/53 (83.02%), Postives = 49/53 (92.45%), Query Frame = 1 
Query:    1 NKGKVFTEEEDAFLLNMMHRYGYGNWEVIRMEIRKAWQFRFDWFFKSRNAAEL 159
            ++GKV+TEEEDAFLLNMMH YGYGNWE IR+EIR AWQF FDWFFKSRNA+EL
Sbjct:  978 SRGKVWTEEEDAFLLNMMHTYGYGNWERIRVEIRNAWQFNFDWFFKSRNASEL 1030
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BLAST of mRNA_H-elongata_contig79646.15617.1 vs. uniprot
Match: F0YAG6_AURAN (Uncharacterized protein RUV1 n=2 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YAG6_AURAN)

HSP 1 Score: 100 bits (249), Expect = 2.030e-23
Identity = 43/53 (81.13%), Postives = 48/53 (90.57%), Query Frame = 1 
Query:    1 NKGKVFTEEEDAFLLNMMHRYGYGNWEVIRMEIRKAWQFRFDWFFKSRNAAEL 159
            ++GKV+TEEEDAFL+NMMH YGYGNWE IR+EIR AWQF FDWFFKSRNA EL
Sbjct:  883 SRGKVWTEEEDAFLVNMMHTYGYGNWERIRVEIRNAWQFNFDWFFKSRNAQEL 935
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BLAST of mRNA_H-elongata_contig79646.15617.1 vs. uniprot
Match: A0A7S1BGS6_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BGS6_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 4.570e-22
Identity = 41/52 (78.85%), Postives = 48/52 (92.31%), Query Frame = 1 
Query:    4 KGKVFTEEEDAFLLNMMHRYGYGNWEVIRMEIRKAWQFRFDWFFKSRNAAEL 159
            KG+ +TEEEDAFL++MM R+G+G+WE IRMEIRKAWQFRFDWFFKSRNA EL
Sbjct:  647 KGRAYTEEEDAFLVSMMFRHGFGSWERIRMEIRKAWQFRFDWFFKSRNAVEL 698
[Close]
BLAST of mRNA_H-elongata_contig79646.15617.1 vs. uniprot
Match: A0A6U0WH08_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A6U0WH08_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 6.250e-22
Identity = 39/53 (73.58%), Postives = 47/53 (88.68%), Query Frame = 1 
Query:    1 NKGKVFTEEEDAFLLNMMHRYGYGNWEVIRMEIRKAWQFRFDWFFKSRNAAEL 159
            NKGK++T EED FL+NMMHR+GYG WE IR+EIR+AWQFRFDW+FKSRN  E+
Sbjct: 1001 NKGKMYTLEEDVFLINMMHRHGYGEWERIRLEIRRAWQFRFDWYFKSRNVNEI 1053
[Close]
BLAST of mRNA_H-elongata_contig79646.15617.1 vs. uniprot
Match: A0A7S1XXH0_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XXH0_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 8.780e-22
Identity = 37/52 (71.15%), Postives = 47/52 (90.38%), Query Frame = 1 
Query:    4 KGKVFTEEEDAFLLNMMHRYGYGNWEVIRMEIRKAWQFRFDWFFKSRNAAEL 159
            KGK++T EED FL+NMMHR+GYG WE IR+E+R+AWQFRFDW+FKSR+A E+
Sbjct:  187 KGKMYTLEEDVFLINMMHRHGYGEWERIRLEVRRAWQFRFDWYFKSRSAPEI 238
[Close]
BLAST of mRNA_H-elongata_contig79646.15617.1 vs. uniprot
Match: A0A2J7YNC1_9CHLO (Putative chromatin-remodeling complex ATPase chain (Fragment) n=1 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J7YNC1_9CHLO)

HSP 1 Score: 87.4 bits (215), Expect = 1.550e-21
Identity = 35/53 (66.04%), Postives = 44/53 (83.02%), Query Frame = 1 
Query:    1 NKGKVFTEEEDAFLLNMMHRYGYGNWEVIRMEIRKAWQFRFDWFFKSRNAAEL 159
            NKGK +TEEED F+L M+H+ GYGNW+ ++ EIRK+W+FRFDWFFKSR   EL
Sbjct:   22 NKGKAYTEEEDRFILCMVHKLGYGNWDDLKAEIRKSWRFRFDWFFKSRTPQEL 74
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig79646.15617.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KHP7_9PHAE4.290e-29100.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LDI0_ECTSI4.290e-29100.00Ci-SWI/SNF n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
A0A835ZE29_9STRA1.400e-2586.54P-loop containing nucleoside triphosphate hydrolas... [more]
A0A7S4E930_9STRA1.660e-2583.02Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A8J2SZN3_9STRA4.290e-2483.02Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
F0YAG6_AURAN2.030e-2381.13Uncharacterized protein RUV1 n=2 Tax=Aureococcus a... [more]
A0A7S1BGS6_9STRA4.570e-2278.85Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A6U0WH08_9STRA6.250e-2273.58Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S1XXH0_9STRA8.780e-2271.15Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A2J7YNC1_9CHLO1.550e-2166.04Putative chromatin-remodeling complex ATPase chain... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig79646contigH-elongata_contig79646:1180..1865 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score115.9
Seed ortholog evalue5.6e-24
Seed eggNOG ortholog2880.D8LDI0
Preferred nameSMARCA5
KEGG koko:K11654,ko:K11727
GOsGO:0000003,GO:0000122,GO:0000166,GO:0000182,GO:0000183,GO:0000228,GO:0000733,GO:0000785,GO:0000790,GO:0000793,GO:0000819,GO:0000981,GO:0001067,GO:0001178,GO:0001410,GO:0001650,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003682,GO:0003690,GO:0003697,GO:0003700,GO:0003824,GO:0004386,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005677,GO:0005694,GO:0005700,GO:0005730,GO:0006139,GO:0006259,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006336,GO:0006338,GO:0006342,GO:0006348,GO:0006351,GO:0006352,GO:0006353,GO:0006354,GO:0006355,GO:0006357,GO:0006360,GO:0006363,GO:0006366,GO:0006369,GO:0006725,GO:0006807,GO:0006996,GO:0006997,GO:0007049,GO:0007059,GO:0007062,GO:0007154,GO:0007165,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0007289,GO:0007338,GO:0007399,GO:0007417,GO:0007420,GO:0008094,GO:0008134,GO:0008144,GO:0008150,GO:0008152,GO:0008623,GO:0009058,GO:0009059,GO:0009373,GO:0009553,GO:0009561,GO:0009566,GO:0009653,GO:0009719,GO:0009725,GO:0009755,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010033,GO:0010035,GO:0010038,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010639,GO:0014070,GO:0015616,GO:0016043,GO:0016070,GO:0016458,GO:0016462,GO:0016584,GO:0016587,GO:0016589,GO:0016590,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017053,GO:0017076,GO:0017111,GO:0018130,GO:0019219,GO:0019222,GO:0019236,GO:0019237,GO:0019438,GO:0019953,GO:0019954,GO:0022008,GO:0022402,GO:0022412,GO:0022414,GO:0022607,GO:0023052,GO:0030154,GO:0030182,GO:0030435,GO:0030436,GO:0030447,GO:0030518,GO:0030522,GO:0030554,GO:0030575,GO:0030874,GO:0031010,GO:0031055,GO:0031213,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031497,GO:0031974,GO:0031981,GO:0032392,GO:0032501,GO:0032502,GO:0032504,GO:0032508,GO:0032553,GO:0032555,GO:0032559,GO:0032774,GO:0032870,GO:0032991,GO:0033043,GO:0033044,GO:0033993,GO:0034080,GO:0034097,GO:0034401,GO:0034508,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034724,GO:0034728,GO:0035039,GO:0035041,GO:0035063,GO:0035075,GO:0035076,GO:0035092,GO:0035639,GO:0035690,GO:0036094,GO:0036310,GO:0036314,GO:0036315,GO:0036436,GO:0036437,GO:0040007,GO:0040026,GO:0040028,GO:0040029,GO:0040034,GO:0042127,GO:0042221,GO:0042493,GO:0042623,GO:0042752,GO:0042766,GO:0043044,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043254,GO:0043401,GO:0043486,GO:0043565,GO:0043933,GO:0043934,GO:0043936,GO:0043954,GO:0044085,GO:0044087,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044452,GO:0044454,GO:0044464,GO:0044703,GO:0045814,GO:0045815,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0045944,GO:0045996,GO:0046019,GO:0046020,GO:0046483,GO:0046688,GO:0048229,GO:0048232,GO:0048468,GO:0048506,GO:0048509,GO:0048510,GO:0048513,GO:0048515,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048545,GO:0048580,GO:0048582,GO:0048583,GO:0048584,GO:0048609,GO:0048646,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051094,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051173,GO:0051239,GO:0051240,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051704,GO:0051716,GO:0060194,GO:0060195,GO:0060255,GO:0060260,GO:0060303,GO:0060322,GO:0061062,GO:0061063,GO:0061641,GO:0065003,GO:0065004,GO:0065007,GO:0065008,GO:0070013,GO:0070603,GO:0070615,GO:0070827,GO:0070828,GO:0070829,GO:0070868,GO:0070870,GO:0070887,GO:0070925,GO:0071103,GO:0071241,GO:0071248,GO:0071280,GO:0071310,GO:0071345,GO:0071383,GO:0071390,GO:0071396,GO:0071407,GO:0071444,GO:0071495,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0090537,GO:0090568,GO:0097159,GO:0097305,GO:0097306,GO:0097367,GO:0097549,GO:0097617,GO:0097659,GO:0098813,GO:0140097,GO:0140110,GO:1900034,GO:1900036,GO:1900049,GO:1900050,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1901654,GO:1901655,GO:1901700,GO:1901701,GO:1902275,GO:1902494,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:1904949,GO:1905268,GO:1990823,GO:1990830,GO:1990837,GO:2000026,GO:2000112,GO:2000113,GO:2000142,GO:2000177,GO:2001141,GO:2001251
EggNOG free text desc.helicase activity
EggNOG OGsCOG0553@1,KOG0385@2759
COG Functional cat.KL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03021,ko03036
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionSNF2-related, helicase, ISW1, SANT and SLIDE domain protein
Ec32 orthologEc-15_000520.1
Exons2
Model size159
Cds size159
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931201.2445922-CDS-H-elongata_contig79646:1179..12331622931201.2445922-CDS-H-elongata_contig79646:1179..1233Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79646 1180..1233 -
1691679739.1369064-CDS-H-elongata_contig79646:1179..12331691679739.1369064-CDS-H-elongata_contig79646:1179..1233Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79646 1180..1233 -
1622931201.266399-CDS-H-elongata_contig79646:1760..18651622931201.266399-CDS-H-elongata_contig79646:1760..1865Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79646 1761..1865 -
1691679739.147963-CDS-H-elongata_contig79646:1760..18651691679739.147963-CDS-H-elongata_contig79646:1760..1865Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79646 1761..1865 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig79646.15617.1prot_H-elongata_contig79646.15617.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig79646 1180..1865 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig79646.15617.1

>prot_H-elongata_contig79646.15617.1 ID=prot_H-elongata_contig79646.15617.1|Name=mRNA_H-elongata_contig79646.15617.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=53bp
NKGKVFTEEEDAFLLNMMHRYGYGNWEVIRMEIRKAWQFRFDWFFKSRNA
AEL
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mRNA from alignment at H-elongata_contig79646:1180..1865-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig79646.15617.1 ID=mRNA_H-elongata_contig79646.15617.1|Name=mRNA_H-elongata_contig79646.15617.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=686bp|location=Sequence derived from alignment at H-elongata_contig79646:1180..1865- (Himanthalia elongata Himel1 dioecious)
AATAAGGGGAAAGTTTTTACCGAAGAAGAGGACGCCTTCCTTCTAAATAT
GATGCACCGATACGGATACGGAAACTGGGAGGTCATCCGCATGGAGATTC
GTAAGGTGGAATTGAAATATTAATTGACGGAATATATATATATATATATA
CGACCGAATTGATTGATTTGATTGGATAAAAAAATGAAGCGCCAAATGGT
ATCCATGACAAACACGACACTTCGGTGATCTAAAAATAATAATTCGGTCT
GGGCTTTTTTTTCTTCTTTGCGTTTTCCTTAAGTTTTCGGTCTCTTTTGC
GTGTGGCTGCTCTCTGTCCATAAACGAAAGCTTTTAATTTTGTCGCTTTT
TTTTGTTTTCTTTTTTAAATGTATTATGATAATAAGATACTTTGTTTTTG
AGGATTATGAAAAGGTTCGTAAAATATCACGATATTATTTTTTTCGCCCG
TGAAAAAAAAATACCGGTACTATTAATATATTAGTAATAACAAGTCTTCC
AGAGGGAAGTGGATTCGACGTCAAGTATGTTTTGTTTTATTATTATTTTA
TTTTATTATTTTTATTTTTATTTTTATCGCCCCTGGTTGTTTATTTTTAT
GTATTTTTCCCCACTTCCTTATATCCATTTAGGCGTGGCAGTTCCGTTTC
GACTGGTTCTTCAAGAGTCGAAACGCGGCGGAACTT
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Coding sequence (CDS) from alignment at H-elongata_contig79646:1180..1865-

>mRNA_H-elongata_contig79646.15617.1 ID=mRNA_H-elongata_contig79646.15617.1|Name=mRNA_H-elongata_contig79646.15617.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=318bp|location=Sequence derived from alignment at H-elongata_contig79646:1180..1865- (Himanthalia elongata Himel1 dioecious)
AATAAGGGGAAAGTTTTTACCGAAGAAGAGGACGCCTTCCTTCTAAATAT
GATGCACCGATACGGATACGGAAACTGGGAGGTCATCCGCATGGAGATTC
GTAAGAATAAGGGGAAAGTTTTTACCGAAGAAGAGGACGCCTTCCTTCTA
AATATGATGCACCGATACGGATACGGAAACTGGGAGGTCATCCGCATGGA
GATTCGTAAGGCGTGGCAGTTCCGTTTCGACTGGTTCTTCAAGAGTCGAA
ACGCGGCGGAACTTGCGTGGCAGTTCCGTTTCGACTGGTTCTTCAAGAGT
CGAAACGCGGCGGAACTT
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