mRNA_H-elongata_contig79575.15610.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig79575.15610.1
Unique NamemRNA_H-elongata_contig79575.15610.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig79575.15610.1 vs. uniprot
Match: A0A6H5JK39_9PHAE (Cyclin N-terminal domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JK39_9PHAE)

HSP 1 Score: 129 bits (325), Expect = 1.240e-33
Identity = 73/96 (76.04%), Postives = 78/96 (81.25%), Query Frame = -1
Query:    1 TTSLAPTATGAVSSKPATSAGPSASSRPIRTATRTPTDIDQRDADEPLAVTEYVEDLYKFLREREITTQVDRRYMDDQPNVNERMRAILIDWLVEV 288
            T + AP A  A+SS PA        SRPIRTA+RTPTDIDQRDADEPLAVTEYVEDLY FLREREI T+VDR YMD QPNVNERMR+ILIDWLVEV
Sbjct:  116 TQTTAPAAPAAISSAPA--------SRPIRTASRTPTDIDQRDADEPLAVTEYVEDLYVFLREREIATKVDRGYMDSQPNVNERMRSILIDWLVEV 203          
BLAST of mRNA_H-elongata_contig79575.15610.1 vs. uniprot
Match: A0A6V2LUR7_9STRA (Hypothetical protein n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2LUR7_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 2.210e-14
Identity = 36/58 (62.07%), Postives = 47/58 (81.03%), Query Frame = -1
Query:    1 IDQRDADEPLAVTEYVEDLYKFLREREITTQVDRRYMDDQPNVNERMRAILIDWLVEV 174
            ID+RD D+PL VT+YV+D+Y+  REREI T V   YM+ Q ++NERMR+IL+DWLVEV
Sbjct:  112 IDERDRDDPLCVTDYVQDMYEHFREREIHTSVRPIYMEGQQHINERMRSILVDWLVEV 169          
BLAST of mRNA_H-elongata_contig79575.15610.1 vs. uniprot
Match: B8BZ02_THAPS (Cyclin N-terminal domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BZ02_THAPS)

HSP 1 Score: 76.3 bits (186), Expect = 2.820e-14
Identity = 35/61 (57.38%), Postives = 47/61 (77.05%), Query Frame = -1
Query:    1 PTDIDQRDADEPLAVTEYVEDLYKFLREREITTQVDRRYMDDQPNVNERMRAILIDWLVEV 183
            P DID+RD+D+PL  T YV+D+Y+  R +E+ T V   YM+DQ  +NERMR+IL+DWLVEV
Sbjct:   15 PDDIDERDSDDPLCATSYVQDMYEHFRGKEVFTSVRPVYMEDQQFINERMRSILVDWLVEV 75          
BLAST of mRNA_H-elongata_contig79575.15610.1 vs. uniprot
Match: A0A7C9AAL2_OPUST (Cyclin N-terminal domain-containing protein n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C9AAL2_OPUST)

HSP 1 Score: 73.9 bits (180), Expect = 3.590e-14
Identity = 37/59 (62.71%), Postives = 45/59 (76.27%), Query Frame = -1
Query:    1 DIDQRDADEPLAVTEYVEDLYKFLREREITTQVDRRYMDDQPNVNERMRAILIDWLVEV 177
            DID RDA  PLAVTEYV+DLY + R  E+++ V   YM  Q ++NE+MRAILIDWLVEV
Sbjct:  110 DIDGRDAKNPLAVTEYVDDLYSYYRRMEVSSCVPPDYMSQQFDINEKMRAILIDWLVEV 168          
BLAST of mRNA_H-elongata_contig79575.15610.1 vs. uniprot
Match: J3KZK6_ORYBR (Cyclin N-terminal domain-containing protein n=1 Tax=Oryza brachyantha TaxID=4533 RepID=J3KZK6_ORYBR)

HSP 1 Score: 74.3 bits (181), Expect = 6.280e-14
Identity = 36/59 (61.02%), Postives = 44/59 (74.58%), Query Frame = -1
Query:    1 DIDQRDADEPLAVTEYVEDLYKFLREREITTQVDRRYMDDQPNVNERMRAILIDWLVEV 177
            DID  D+  PLA TEYVE++YKF RE E T+ V   YM  Q ++NE+MRAILIDWL+EV
Sbjct:   96 DIDSADSGNPLAATEYVEEMYKFYRENEETSCVQPDYMSSQEDINEKMRAILIDWLIEV 154          
BLAST of mRNA_H-elongata_contig79575.15610.1 vs. uniprot
Match: A0A7S3Q0F9_9STRA (Hypothetical protein n=2 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q0F9_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 1.030e-13
Identity = 36/64 (56.25%), Postives = 49/64 (76.56%), Query Frame = -1
Query:    1 TRTPTDIDQRDADEPLAVTEYVEDLYKFLREREITTQVDRRYMDDQPNVNERMRAILIDWLVEV 192
            T T  DID+RD ++PL VT YV+D+Y+   ++E +T V   YM+DQ N+NERMR+IL+DWLVEV
Sbjct:   94 TGTVDDIDERDKNDPLCVTSYVQDMYEHFADKEQSTSVRPVYMEDQSNINERMRSILVDWLVEV 157          
BLAST of mRNA_H-elongata_contig79575.15610.1 vs. uniprot
Match: A0A7S0GK98_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GK98_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 1.040e-13
Identity = 34/58 (58.62%), Postives = 47/58 (81.03%), Query Frame = -1
Query:    1 IDQRDADEPLAVTEYVEDLYKFLREREITTQVDRRYMDDQPNVNERMRAILIDWLVEV 174
            ID+RD+D+PL VTEYV ++Y+  R +E +T V   YM++Q +VNERMR+IL+DWLVEV
Sbjct:  108 IDERDSDDPLCVTEYVSEMYQHFRSKERSTSVRPVYMENQRHVNERMRSILVDWLVEV 165          
BLAST of mRNA_H-elongata_contig79575.15610.1 vs. uniprot
Match: A0A7S2E2X1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2E2X1_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 1.290e-13
Identity = 34/59 (57.63%), Postives = 46/59 (77.97%), Query Frame = -1
Query:    1 DIDQRDADEPLAVTEYVEDLYKFLREREITTQVDRRYMDDQPNVNERMRAILIDWLVEV 177
            DID RD + PL VTEYV ++Y+ LR +E+   V+  YM+ QP++NE+MRAILIDWL+EV
Sbjct:  163 DIDARDVNNPLMVTEYVVEIYQHLRSKELQMSVNPTYMERQPHINEKMRAILIDWLIEV 221          
BLAST of mRNA_H-elongata_contig79575.15610.1 vs. uniprot
Match: A0A2K3NK41_TRIPR (B-like cyclin (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3NK41_TRIPR)

HSP 1 Score: 75.1 bits (183), Expect = 1.350e-13
Identity = 39/59 (66.10%), Postives = 44/59 (74.58%), Query Frame = -1
Query:    1 DIDQRDADEPLAVTEYVEDLYKFLREREITTQVDRRYMDDQPNVNERMRAILIDWLVEV 177
            DID  DAD PLAVTEY+EDLY F R+ E T  V   YM  Q ++NERMRAILIDWL+EV
Sbjct:   81 DIDTCDADNPLAVTEYIEDLYSFYRKVESTGCVSPNYMAQQFDINERMRAILIDWLIEV 139          
BLAST of mRNA_H-elongata_contig79575.15610.1 vs. uniprot
Match: A0A7S4AAP4_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AAP4_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 1.550e-13
Identity = 34/58 (58.62%), Postives = 46/58 (79.31%), Query Frame = -1
Query:    1 IDQRDADEPLAVTEYVEDLYKFLREREITTQVDRRYMDDQPNVNERMRAILIDWLVEV 174
            ID+RDA++PL  TEYV+D+Y   RE+E  T V   YM++Q ++NERMR+IL+DWLVEV
Sbjct:  120 IDERDAEDPLCATEYVQDMYDHFREKEAITSVRPLYMENQTHINERMRSILVDWLVEV 177          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig79575.15610.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JK39_9PHAE1.240e-3376.04Cyclin N-terminal domain-containing protein n=2 Ta... [more]
A0A6V2LUR7_9STRA2.210e-1462.07Hypothetical protein n=3 Tax=Ditylum brightwellii ... [more]
B8BZ02_THAPS2.820e-1457.38Cyclin N-terminal domain-containing protein n=1 Ta... [more]
A0A7C9AAL2_OPUST3.590e-1462.71Cyclin N-terminal domain-containing protein n=1 Ta... [more]
J3KZK6_ORYBR6.280e-1461.02Cyclin N-terminal domain-containing protein n=1 Ta... [more]
A0A7S3Q0F9_9STRA1.030e-1356.25Hypothetical protein n=2 Tax=Chaetoceros debilis T... [more]
A0A7S0GK98_9STRA1.040e-1358.62Hypothetical protein (Fragment) n=1 Tax=Proboscia ... [more]
A0A7S2E2X1_9STRA1.290e-1357.63Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A2K3NK41_TRIPR1.350e-1366.10B-like cyclin (Fragment) n=1 Tax=Trifolium pratens... [more]
A0A7S4AAP4_9STRA1.550e-1358.62Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig79575contigH-elongata_contig79575:1531..1874 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size344
Cds size342
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931200.4874222-CDS-H-elongata_contig79575:1530..18721622931200.4874222-CDS-H-elongata_contig79575:1530..1872Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79575 1531..1872 +
1691679738.8812916-CDS-H-elongata_contig79575:1530..18721691679738.8812916-CDS-H-elongata_contig79575:1530..1872Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79575 1531..1872 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig79575.15610.1prot_H-elongata_contig79575.15610.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig79575 1531..1872 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig79575.15610.1

>prot_H-elongata_contig79575.15610.1 ID=prot_H-elongata_contig79575.15610.1|Name=mRNA_H-elongata_contig79575.15610.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=114bp
HLHQPVDQNRAHSLVNVRLVVHVSPVHLSRNFSFPKKLVQILNVLRHCQR
LVCVSLVYVSRGSSCRPNRARRCRRASAGSRLATDGARRRRRQRCRGHKI
IPLTCLCFNGYTCS
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mRNA from alignment at H-elongata_contig79575:1531..1874+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig79575.15610.1 ID=mRNA_H-elongata_contig79575.15610.1|Name=mRNA_H-elongata_contig79575.15610.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=344bp|location=Sequence derived from alignment at H-elongata_contig79575:1531..1874+ (Himanthalia elongata Himel1 dioecious)
CACCTCCACCAGCCAGTCGATCAGAATCGCGCGCATTCGCTCGTTAACGT TAGGCTGGTCGTCCATGTATCGCCGGTCCACCTGAGTCGTAATTTCTCGT TCCCTAAGAAACTTGTACAGATCCTCAACGTACTCCGTCACTGCCAGCGG CTCGTCTGCGTCTCGCTGGTCTATGTCAGTCGGGGTTCGAGTTGCCGTCC GAATCGGGCGCGAAGATGCCGAAGGGCCAGCGCTGGTAGCAGGCTTGCTA CTGACGGCGCCCGTCGCCGTCGGCGCCAGAGATGTCGTGGACACAAGATT ATCCCTCTGACCTGTTTGTGCTTTAACGGATACACCTGCAGCTG
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Coding sequence (CDS) from alignment at H-elongata_contig79575:1531..1874+

>mRNA_H-elongata_contig79575.15610.1 ID=mRNA_H-elongata_contig79575.15610.1|Name=mRNA_H-elongata_contig79575.15610.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=684bp|location=Sequence derived from alignment at H-elongata_contig79575:1531..1874+ (Himanthalia elongata Himel1 dioecious)
CACCTCCACCAGCCAGTCGATCAGAATCGCGCGCATTCGCTCGTTAACGT
TAGGCTGGTCGTCCATGTATCGCCGGTCCACCTGAGTCGTAATTTCTCGT
TCCCTAAGAAACTTGTACAGATCCTCAACGTACTCCGTCACTGCCAGCGG
CTCGTCTGCGTCTCGCTGGTCTATGTCAGTCGGGGTTCGAGTTGCCGTCC
GAATCGGGCGCGAAGATGCCGAAGGGCCAGCGCTGGTAGCAGGCTTGCTA
CTGACGGCGCCCGTCGCCGTCGGCGCCAGAGATGTCGTGGACACAAGATT
ATCCCTCTGACCTGTTTGTGCTTTAACGGATACACCTGCAGCCACCTCCA
CCAGCCAGTCGATCAGAATCGCGCGCATTCGCTCGTTAACGTTAGGCTGG
TCGTCCATGTATCGCCGGTCCACCTGAGTCGTAATTTCTCGTTCCCTAAG
AAACTTGTACAGATCCTCAACGTACTCCGTCACTGCCAGCGGCTCGTCTG
CGTCTCGCTGGTCTATGTCAGTCGGGGTTCGAGTTGCCGTCCGAATCGGG
CGCGAAGATGCCGAAGGGCCAGCGCTGGTAGCAGGCTTGCTACTGACGGC
GCCCGTCGCCGTCGGCGCCAGAGATGTCGTGGACACAAGATTATCCCTCT
GACCTGTTTGTGCTTTAACGGATACACCTGCAGC
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