mRNA_H-elongata_contig7956.15608.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig7956.15608.1 vs. uniprot
Match: A0A6H5KP42_9PHAE (YHYH domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KP42_9PHAE) HSP 1 Score: 411 bits (1056), Expect = 1.400e-133 Identity = 191/292 (65.41%), Postives = 228/292 (78.08%), Query Frame = 1
Query: 211 IDCAQNGTSAHYEEFLSESESDTVRYGFSETGCPNHVNWAINPTEAQVTASVNDSIPAYPMMFGNNATTDLSTAALSVGIMRNGVALFSAWAVDPVEDYEDTAFYLEADTFDLCGGHATPDGTYHYHGTAGCLQEQAMMEAGTTADEHSPILGWAFDGFPVYGQLGPNGIEMKMCGEDGADEVHCLDICSGYEAELSDTDEFKYRYYLSCGFDESFFPFTTNCYRGCCPDGITCNEKVEACDDDAVEGYTEDYIPEALATLHDSYDAELIEGADTIHIGSNDTVNCTLYLGT 1086
++CA +GT AHYEEFL+ R+ +ETGCPNH+NW +NP A V SVN S+PAYPM+ + TTDLS+AA ++G+MRNGV++FSAWAVD V +YEDTAFYLEADTFD CGGHATP G YHYHGTAGCLQEQA G EHSP+LGW++DGFP+YGQLGP G+EMKMCG DGA + CLD+CSGYEA + D DEF YRYY SCGFDESFFPFT NC+RGCCP G TC++++EAC DA GYT+DY+P AL +L + YDAEL+ G D IGS TVNCTLYLG+
Sbjct: 53 VECATDGTDAHYEEFLAGEGITMARWTATETGCPNHINWPLNPNAAGV-MSVNQSVPAYPMLIASGGTTDLSSAAGTIGLMRNGVSMFSAWAVDAVVEYEDTAFYLEADTFDPCGGHATPTGAYHYHGTAGCLQEQA----GAVKGEHSPVLGWSYDGFPIYGQLGPGGVEMKMCGADGAHDTACLDLCSGYEATI-DEDEFTYRYYTSCGFDESFFPFTLNCFRGCCPTGNTCSDRLEACGVDADVGYTDDYVPVALESLDEFYDAELVLGDDLELIGSRTTVNCTLYLGS 338
BLAST of mRNA_H-elongata_contig7956.15608.1 vs. uniprot
Match: D7FUL4_ECTSI (YHYH domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUL4_ECTSI) HSP 1 Score: 410 bits (1053), Expect = 1.830e-132 Identity = 194/307 (63.19%), Postives = 235/307 (76.55%), Query Frame = 1
Query: 208 SIDCAQNGTSAHYEEFLSESESDTVRYGFSETGCPNHVNWAINPTEAQVTASVNDSIPAYPMMFGNNATTDLSTAALSVGIMRNGVALFSAWAVDPVEDYEDTAFYLEADTFDLCGGHATPDGTYHYHGTAGCLQEQAMMEAGTTADEHSPILGWAFDGFPVYGQLGPNGIEMKMCGEDGADEVHCLDICSGYEAELSDTDEFKYRYYLSCGFDESFFPFTTNCYRGCCPDGITCNEKVEACDDDAVEGYTEDYIPEALATLHDSYDAELIEGADTIHIGSNDTVNCTLYLGT---TFASGYDSTDS 1119
S++CA NG+ AHY+EFL+ VR+ + TGCPNHVNW INP V A +N+SIPAYPM+ + TTDLS+AA ++G+MRNGV+++SAWA+D VE+YEDTAFYLEADT D CGGHATP G+YHYH TAGCLQEQA G A EHSP+LGW++DGFP+YGQLGP G+EMKMCG DGAD CLD+CSGYEA + D D F YRYY SCGFDESFFPFT NCYRGCCP G+TC++++EAC D A+ GYT D++P A +LH+ YDA LI G D IG++ TVNCTLYLG ASG S D+
Sbjct: 67 SVECAYNGSDAHYDEFLAGEGLTMVRWTGTNTGCPNHVNWPINPNPGLVIA-INESIPAYPMLLEDGGTTDLSSAAGTIGLMRNGVSMYSAWALDAVEEYEDTAFYLEADTLDPCGGHATPTGSYHYHSTAGCLQEQA----GAVAGEHSPLLGWSYDGFPIYGQLGPGGVEMKMCGADGADSTVCLDLCSGYEASI-DEDTFTYRYYTSCGFDESFFPFTLNCYRGCCPTGVTCSDRIEACGDGALIGYTGDHVPVASESLHEPYDALLISGDDEDIIGTDLTVNCTLYLGAGSVQVASGVASDDT 367
BLAST of mRNA_H-elongata_contig7956.15608.1 vs. uniprot
Match: D8LCJ6_ECTSI (YHYH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCJ6_ECTSI) HSP 1 Score: 170 bits (431), Expect = 8.770e-45 Identity = 91/220 (41.36%), Postives = 121/220 (55.00%), Query Frame = 1
Query: 448 IMRNGVALFSAWAVD-PVEDYEDTAFYLEADTFDLCGGHATPDGTYHYHGTAGCLQEQAMMEAGTTADEHSPILGWAFDGFPVYGQLGPNGIEMKMCGEDGADEVHCLDICSGYEAELSDTDEFKYRYYLSCGFDESFFPFTTNCYRGCCPDGITCNEKVEACDDD--AVEGYTEDYIP----EALATLHDSYDAELIEGADTIHIGSNDTVNCTLYLGT 1086
+M NGVA++S++A D Y A L DT DLCGG T DG YHYH GCLQEQAM TAD+HSP+LGWA+DGFP+YGQLGP+G+EM L+CG +FPFT NCYRGCC + C+ V+ C ++ AV GYT+D+ E+L D++LIEG D + + D ++C+ Y+G+
Sbjct: 1 MMINGVAVYSSYADDRAATTYGAAAAKLHGDTTDLCGGSTTADGVYHYHNAPGCLQEQAMKAQNLTADDHSPLLGWAYDGFPIYGQLGPSGVEM-----------------------------------LTCGSGPEYFPFTINCYRGCCEETTRCHSTVQNCIEELGAVIGYTDDFTAGQSYESLYLDTPYMDSDLIEGDDVDQVATQDEMDCSFYMGS 185
BLAST of mRNA_H-elongata_contig7956.15608.1 vs. uniprot
Match: D8LCJ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCJ4_ECTSI) HSP 1 Score: 171 bits (433), Expect = 1.500e-43 Identity = 116/280 (41.43%), Postives = 142/280 (50.71%), Query Frame = 1
Query: 280 VRYGFSETGCPNHVNWAINPTEAQVTASVNDSIPAYPMMFGNNATTDLSTAALSVGIMRNGVALFSAWAVDPVEDYEDTAFYLEADTFDLCGGHATPDGTYHYHGTA-GCLQEQAMMEAGTTADEHSPILGWAFDGFPVYGQLGPNGIEMKMCGEDGADEVHCLDICSGYEAELSDTDEFKYRYYLSCGFDESFFPFTTNCYRGCCPDGITCNEKVEACDDDAVEGYTEDYIPEALATLHDSYDAELIEGADTIHIGSNDTVNCTLYLGTTFASGYDSTD 1116
VR+ ++TGCPNHV+W INP A V + N SI AYPMM +N T DLS+A+ ++ +MRNGV+ V+DY DTAFYLEAD+FD CGGHATP+G YHYHGTA C + A T WA C E C+ S +S + + N C+EKV+AC DD V GYT D +P A+L + YDA LIEG DT IGSN TVNCTLYLG SG D T+
Sbjct: 48 VRWAVTDTGCPNHVSWDINPNFAGV-SDRNASILAYPMMSADNGTKDLSSASGTICMMRNGVS--------HVQDYFDTAFYLEADSFDPCGGHATPNGFYHYHGTAVACRNRRRRSRASTRRC-------WA----------------GHTCAEPKGRTTRSASTCAPATRPSSTR--------MSTPTATTRDRYNHN----------RCSEKVDACGDDPVAGYTADLVPAETASLDEMYDALLIEGLDTDIIGSNFTVNCTLYLG----SGGDGTE 273
BLAST of mRNA_H-elongata_contig7956.15608.1 vs. uniprot
Match: A0A7S1AW44_NOCSC (Hypothetical protein (Fragment) n=3 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1AW44_NOCSC) HSP 1 Score: 161 bits (407), Expect = 3.810e-39 Identity = 101/281 (35.94%), Postives = 139/281 (49.47%), Query Frame = 1
Query: 211 IDCAQNGTSAHYEEFLSESESDTVRYGFSETGCPNHVNWAINPTEAQVTASVNDSIPAYPMMFGN-------NATTDLSTAALSVGIMRNGVALFSAWA---VDPVEDYEDTAFYLEADTFDLCGGHATPDG--TYHYHGTAGCLQEQAMMEAGTTADEHSPILGWAFDGFPVYGQLGPNGIEMKMC----GEDGADEVHCLDICSGYEAELSDTDEFKYRYYLSCGFDE--------------SFFPFTTNCYRGCCPDGITCN-EKVEACDDDAVEGYT 960
+ C +G Y SES S TVR + CPNH + +NP A V S +PA+P G +A+ DLS +VG++ +G LFS + V Y +A Y EA+TFD CGGHA+ +YHYHG CL + + G HSP +GWA DGFP+YG GP+G+ M+ C G G D C D C GY + D F YRYYL + + ++ P + C+RGCCP G++C+ ++ C D +GYT
Sbjct: 51 VSCTDDGNDYEY----SESVSGTVRT-ITTNHCPNHPTYNLNPNYA-VGESTTYRVPAFPSFVGTTTASGTASASIDLSEQGGAVGVLFSGGKLFSPYGGAGYGQVSGYSTSAIYNEANTFDQCGGHASSSTQPSYHYHGPPPCL----LRQLGQADASHSPQVGWALDGFPIYGPRGPSGVMMQTCTVTDGTYGVDV--CTDDCGGYYSADDSIDNFVYRYYLMGNYGDGTSCDVPGCPSPTSAYHPSSPLCFRGCCPSGVSCSLSAIDTCTSDDSDGYT 319
BLAST of mRNA_H-elongata_contig7956.15608.1 vs. uniprot
Match: A0A7S1JAX6_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1JAX6_9EUGL) HSP 1 Score: 152 bits (385), Expect = 3.700e-37 Identity = 105/289 (36.33%), Postives = 145/289 (50.17%), Query Frame = 1
Query: 217 CAQNGTSAHYEEFLSESESDTVRYGFSETGCPNHVNWAINPTEAQVTASVNDSIPAYPMMFGNNATTDLSTAALSVGIMRNGVALFSAWA---VDPVEDYEDTAFYLEADTFDLCGGHATPD--GTYHYHGTAGCLQEQAMMEAGTTADEHSPILGWAFDGFPVYGQLGPNGIEMKMCGEDGADEVHCLDICS----GYEAELSDTDEFKYRYY--------LSCG---------FDESFFPFTTNCYRGCCPDGITCNEK-VEACDDDAVEGYTEDYIPEALATLHDS 1002
CA +G+ Y E ++ S + T CPNH INP + V A ++PA P + AT+DL++ A +G+M +G L+S +A + +A Y E DTFD+CGGH++ +YHYH CL + + G +A HSP +GWA DGFPVYG GP+G MK C + G + D+C+ GY A+L TD F +RYY LSC D + +P T Y GCCP G++C+ V C AV G T Y A + LH S
Sbjct: 36 CATDGSDYSYSEVITGSSRV-----ITTTLCPNHPWKNINPGQP-VKAQTVYTVPANPQ-YDTAATSDLTSQAGLIGVMFSGAMLYSPYAGPATGAATSFTKSAPYGEGDTFDMCGGHSSSKTVASYHYHVPPSCL----LQQLGASATAHSPQVGWAADGFPVYGSRGPSGTLMKSCTQTGG--TYGTDVCTNEFGGYLADLPGTDNFTFRYYMQGSSNDGLSCTNPLSPAPATTDSTSYPQTPTKYYGCCPSGVSCSGGFVNVCSGTAVAGTTSSYSA-AASVLHAS 310
BLAST of mRNA_H-elongata_contig7956.15608.1 vs. uniprot
Match: A0A8J2WVX8_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WVX8_9STRA) HSP 1 Score: 152 bits (383), Expect = 1.730e-36 Identity = 91/258 (35.27%), Postives = 127/258 (49.22%), Query Frame = 1
Query: 217 CAQNGTSAHYEEFLSESESDTVRYGFSETGCPNHVNWAINPT------EAQVTA-------SVNDSIPAYPMMFGNNATTDLSTAALSVGIMRNGVALFSAWAV----DPVEDYEDTAFYLEADTFDLCGGHATPDGTYHYHGTAGCLQEQAMMEA--GTT-ADEHSPILGWAFDGFPVYGQLGPNGIEMKMCGEDGADEVHCLDICSGYEAELSDTDEFKYRYYLSCGFDES--------------FFPFTTNCYRG 888
CA +G+SA Y E ++ +VR S TGCPNH ++ E + T S++ +PA P + + +L + ++ NGV +S P + E +FD C GH+T G YHYH CL QA +A GTT A+ HSP +GWA DGFP+YG LGP G+E++ CG GAD +C D C GYE EL D +KYRYY++ + +FP+T C+RG
Sbjct: 39 CAADGSSASYTETITTQSGVSVRKIVS-TGCPNHESYCTGKPGNSCGDEGKQTTLVEGKEQSLSVEVPANPKLKSSYTAEELDCSMGTIAYALNGVGFYSGAVAFVSGGPCPQLDVADATAEWISFDCCSGHSTGSGGYHYHFPPSCLLAQADADAPVGTTVANGHSPQIGWAQDGFPIYGPLGPGGVEIRNCGASGADSTYCQDACGGYEGELDGVDNYKYRYYVTGKVGDLNALPSNPKPDSEALYFPYTIRCHRG 295
BLAST of mRNA_H-elongata_contig7956.15608.1 vs. uniprot
Match: A0A813JEL4_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813JEL4_POLGL) HSP 1 Score: 151 bits (382), Expect = 1.150e-35 Identity = 95/279 (34.05%), Postives = 140/279 (50.18%), Query Frame = 1
Query: 217 CAQNGTSAHYEEFLSES-ESDTVRYGFSETGCPNHVNWAINPTEAQVTASVNDSIPAYPMMFGNNA-------TTDLSTAALSVGIMRNGVALFSAWA---VDPVEDYEDTAFYLEADTFDLCGGHATP--DGTYHYHGTAGCLQEQAMMEAGTTADEHSPILGWAFDGFPVYGQLGPNGIEMKMC----GEDGADEVHCLDICSGYEAELSDTDEFKYRYYLSCGFDE--------------SFFPFTTNCYRGCCPDGITCNEKVEACDDDAVEGYT 960
CA++G+ Y E +S S ++ TV GCPNH + ++P++ + + +IP YP G++ DLS S+GI NG LFS +A V++Y +A Y + TFD G H+ +G Y CL + + G T+ HSP +GWA DGFP+YG GPNG++M+ C G G+D C D+C GY D + YRYY+ +D+ +++P T C+RGCCP G+TC+ V AC GY+
Sbjct: 22 CAKDGSDYFYTESVSSSPKTRTV----VSNGCPNHPWYQLSPSKPSL-QKMTYTIPLYPQFLGSSTYSTSGYPAVDLSQTVDSIGIFFNGGMLFSPYAGPTYGQVKNYATSATYAKGSTFDQRGCHSNDLSNGLYGCSVPPHCL----LNQLGQTSGSHSPQIGWAHDGFPIYGPRGPNGVQMQTCEVTGGTYGSDV--CTDVCGGYYLNDGTIDNYYYRYYIQGTYDDGTSCSNPGCTSPGANYYPNTPVCFRGCCPSGVTCSSVVPACSGSYSNGYS 289
BLAST of mRNA_H-elongata_contig7956.15608.1 vs. uniprot
Match: A0A0G4G8Z0_9ALVE (YHYH domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4G8Z0_9ALVE) HSP 1 Score: 147 bits (370), Expect = 4.520e-35 Identity = 90/254 (35.43%), Postives = 127/254 (50.00%), Query Frame = 1
Query: 214 DCAQNGTSAHYEEFLSESESDTVRYGFSETGCPNHVNWAINPTEAQVTASVNDSIPAYPMMFGNNATTDLSTAALSVGIMRNGVALFSAWAV---DPVEDYEDTAFYLEADTFDLCGGHATPDG--TYHYHGTAGCLQEQAMMEAGTTADEHSPILGWAFDGFPVYGQLGPNGIEMKMCGEDGADEVHCLDICSGYEAELSDTDEFKYRYYL---------SCGFDES------FFPFTTNCYRGCCPDGITCN 915
+C +GT Y E ++ + T+ + T CPNH +N T V +V+ S+P YP + ++AT +T+ VG++ +G +FS ++ V + +A LE TFDLCG HA+ + +YH H CL Q M +HSP +GWA DGFP+YG GP+G M+ C G C D C GY A LS D + YRYYL +CG + +P T C GCCP G TC+
Sbjct: 27 ECIGDGTDYDYIEEITTTTERTMIF----TNCPNHPYRNLN-TYWPVKGNVSFSVPLYPE-YESSATVSFTTSVGPVGVLFSGAYVFSPYSEIVQTEVTGFSSSAVQLEKGTFDLCGCHASSNEAPSYHCHHPPDCLLRQMNMNE----SDHSPQIGWAADGFPIYGPRGPDGTIMRTCSSQGLSSGVCTDSCGGYAATLSTVDTYTYRYYLQGNAISGVGTCGSPDGTVSGSEHYPQTPPCLMGCCPSGATCS 270
BLAST of mRNA_H-elongata_contig7956.15608.1 vs. uniprot
Match: A0A813J4D8_POLGL (Hypothetical protein (Fragment) n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813J4D8_POLGL) HSP 1 Score: 147 bits (370), Expect = 5.710e-35 Identity = 93/278 (33.45%), Postives = 139/278 (50.00%), Query Frame = 1
Query: 217 CAQNGTSAHYEEFLSES-ESDTVRYGFSETGCPNHVNWAINPTEAQVTASVNDSIPAYPMMFGNNA-------TTDLSTAALSVGIMRNGVALFSAWA---VDPVEDYEDTAFYLEADTFDLCGGHATP--DGTYHYHGTAGCLQEQAMMEAGTTADEHSPILGWAFDGFPVYGQLGPNGIEMK---MCGEDGADEVHCLDICSGYEAELSDTDEFKYRYYLSCGFDE--------------SFFPFTTNCYRGCCPDGITCNEKVEACDDDAVEGYT 960
CA++G+ Y E +S S ++ TV GCPNH + ++P++ + + +IP YP G++ DLS S+GI NG LFS +A V++Y +A Y + TFD G H+ +G Y CL + + G T+ HSP +GWA DGFP+YG GPNG++M+ + G +V C D+C GY D + YRYY+ +D+ +++P T C+RGCCP G+TC+ V AC GY+
Sbjct: 22 CAKDGSDYFYTESVSSSPKTRTV----VSNGCPNHPWYQLSPSKPSL-QKMTYTIPLYPQFLGSSTYSTSGYPAVDLSQTVDSIGIFFNGGMLFSPYAGPTYGQVKNYATSATYAKGSTFDQRGCHSNDLSNGLYGCSVPPHCL----LNQLGQTSGSHSPQIGWAHDGFPIYGPRGPNGVQMQTREVTGGTYGSDV-CTDVCGGYYLNDGTIDNYYYRYYIQGTYDDGTSCSNPGCTSPGGNYYPNTPVCFRGCCPSGVTCSSVVPACSGSYSNGYS 289 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7956.15608.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig7956.15608.1 >prot_H-elongata_contig7956.15608.1 ID=prot_H-elongata_contig7956.15608.1|Name=mRNA_H-elongata_contig7956.15608.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=412bp MKATSTSVRKLGAFAFIGIALCQRANGQPGAGMGTSDDGATNDIPPPEDGback to top mRNA from alignment at H-elongata_contig7956:4056..8602+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig7956.15608.1 ID=mRNA_H-elongata_contig7956.15608.1|Name=mRNA_H-elongata_contig7956.15608.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4547bp|location=Sequence derived from alignment at H-elongata_contig7956:4056..8602+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig7956:4056..8602+ >mRNA_H-elongata_contig7956.15608.1 ID=mRNA_H-elongata_contig7956.15608.1|Name=mRNA_H-elongata_contig7956.15608.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2472bp|location=Sequence derived from alignment at H-elongata_contig7956:4056..8602+ (Himanthalia elongata Himel1 dioecious)back to top |