mRNA_H-elongata_contig79530.15607.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig79530.15607.1
Unique NamemRNA_H-elongata_contig79530.15607.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig79530.15607.1 vs. uniprot
Match: D8LKJ4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKJ4_ECTSI)

HSP 1 Score: 191 bits (486), Expect = 8.400e-56
Identity = 124/237 (52.32%), Postives = 147/237 (62.03%), Query Frame = 1 
Query:  310 LEGIDACLRRWKAARREGQVVLAGLSNALLLRTYAEQ-------ERGASASHVWGALSSAGTAVPRVALAIEARARRLHEDLSALQDAMVAAAAGVRRHAQEARRQCYPEREAAPLDGCAAPASPMAAWKGGTKATSTSSVA----------------AVVGGGYAMEDVADAASEVSEMLLREALVTATVVHRVGE--CQDDRHALTMYAAAWMMQPYLDTGRGSDLEVMVGARRR 945
            L+ ID CLRRWKAAR EGQ VL  LSNALLLRTY ++        R A+   VWGAL+ AGT V RV++A E RARRLH DLSALQDAMVAAA  +RRHA+E RR+    R        +  +S   A                              A VGGGYA+ DVAD  S+V+EML++EALVTATVV  VG+   +DDR ALT+YAAAWMMQPY+D GR  +LEVMVG + R
Sbjct:   27 LDEIDGCLRRWKAARHEGQAVLTDLSNALLLRTYVDKGXXXXXXXRAATDGAVWGALAGAGTTVSRVSVATEHRARRLHGDLSALQDAMVAAAGELRRHAREVRRRWVSARAGGEDHRTSGSSSGAKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAVGGGYALVDVADTTSQVAEMLMKEALVTATVVQGVGQEHGRDDREALTVYAAAWMMQPYVDAGRLKELEVMVGGQGR 263
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BLAST of mRNA_H-elongata_contig79530.15607.1 vs. uniprot
Match: A0A835ZE08_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZE08_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 1.180e-14
Identity = 71/205 (34.63%), Postives = 94/205 (45.85%), Query Frame = 1 
Query:  307 ILEGIDACLRRWKAARREGQVVLAGLSNALLLRTYAEQERGASASHVWGALSSAGTAVP-RVALAIEARARRLHEDLSALQDAMVAAAAGVRRHAQEARRQCYPEREAAPLDGCAAPASPMAAWKGGTKATSTSSVAAVVGGGYAMEDVADAASEVSEMLLREALVTATVVHRVGECQDDRHALTMYAAAWMMQPYLDTGRGSDL 918
            +L+ I+  L RW   + EGQ +L+ LSNA L R++         S  WG L  AGT+VP  VAL +EA+  +L  DL  +    V   AG  +   +   Q   E+     DG          W  G               GY+  D+A AA  +  ML RE  V   V    G+C   R  LT+YAAAWMMQPY++ G   DL
Sbjct:   12 LLQEINLDLHRWTVHKAEGQGLLSELSNASLSRSFVSDT-----SSAWGPL--AGTSVPGTVALKLEAKVCKLQLDLQGV----VTNLAGCAKSVIDTAAQLQ-EQHGGGADG----------WHNG---------------GYSAADIAQAALALGRMLEREVAVAEAVCADAGDCSS-RDTLTLYAAAWMMQPYMERGLWKDL 178
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BLAST of mRNA_H-elongata_contig79530.15607.1 vs. uniprot
Match: A0A835ZCP9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCP9_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 6.220e-5
Identity = 31/71 (43.66%), Postives = 39/71 (54.93%), Query Frame = 1 
Query:  727 GGYAMEDVADAASEVSEMLLREALVTATVVHRVGECQDDRHALTMYAAAWMMQPYLD--TGRGSDLEVMVG 933
            GGY+  D+A AA  +  ML RE  V   V    G+C   R  LT+YAAAWMMQP +   TG G   + + G
Sbjct:   95 GGYSAADIAQAALALGRMLKREVAVAEAVCADAGDCSS-RDTLTLYAAAWMMQPTISKRTGCGQYFDAISG 164
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig79530.15607.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LKJ4_ECTSI8.400e-5652.32Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZE08_9STRA1.180e-1434.63Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZCP9_9STRA6.220e-543.66Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig79530contigH-elongata_contig79530:1523..2919 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-16_003180.1
Exons2
Model size997
Cds size747
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig79530.15607.1prot_H-elongata_contig79530.15607.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig79530 2139..2885 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931199.975211-UTR-H-elongata_contig79530:1522..15831622931199.975211-UTR-H-elongata_contig79530:1522..1583Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig79530 1523..1583 +
1691679738.6149678-UTR-H-elongata_contig79530:1522..15831691679738.6149678-UTR-H-elongata_contig79530:1522..1583Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig79530 1523..1583 +
1622931199.990011-UTR-H-elongata_contig79530:1983..21381622931199.990011-UTR-H-elongata_contig79530:1983..2138Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig79530 1984..2138 +
1691679738.6269903-UTR-H-elongata_contig79530:1983..21381691679738.6269903-UTR-H-elongata_contig79530:1983..2138Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig79530 1984..2138 +
1622931200.0551286-UTR-H-elongata_contig79530:2885..29191622931200.0551286-UTR-H-elongata_contig79530:2885..2919Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig79530 2886..2919 +
1691679738.6474307-UTR-H-elongata_contig79530:2885..29191691679738.6474307-UTR-H-elongata_contig79530:2885..2919Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig79530 2886..2919 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931200.0379694-CDS-H-elongata_contig79530:2138..28851622931200.0379694-CDS-H-elongata_contig79530:2138..2885Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79530 2139..2885 +
1691679738.6379392-CDS-H-elongata_contig79530:2138..28851691679738.6379392-CDS-H-elongata_contig79530:2138..2885Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79530 2139..2885 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig79530.15607.1

>prot_H-elongata_contig79530.15607.1 ID=prot_H-elongata_contig79530.15607.1|Name=mRNA_H-elongata_contig79530.15607.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=249bp
MSSPPGAVDRTADDTGQTLEGDANNCGSGDILEGIDACLRRWKAARREGQ
VVLAGLSNALLLRTYAEQERGASASHVWGALSSAGTAVPRVALAIEARAR
RLHEDLSALQDAMVAAAAGVRRHAQEARRQCYPEREAAPLDGCAAPASPM
AAWKGGTKATSTSSVAAVVGGGYAMEDVADAASEVSEMLLREALVTATVV
HRVGECQDDRHALTMYAAAWMMQPYLDTGRGSDLEVMVGARRRKSTLP*
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mRNA from alignment at H-elongata_contig79530:1523..2919+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig79530.15607.1 ID=mRNA_H-elongata_contig79530.15607.1|Name=mRNA_H-elongata_contig79530.15607.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1397bp|location=Sequence derived from alignment at H-elongata_contig79530:1523..2919+ (Himanthalia elongata Himel1 dioecious)
GTGCGCCTCCAGACATCGAACATCGAGCTAGGGATCGAAACTACAACTCC
CCCGAACTCTGGTACGGCAAGCGAGTATCACCGAATTTTTCACCGAGATT
TTTGCGGAAATCTACGTCTAATGGTGTCGCCAGTTTTGATTTCTTCGCTG
TTGCTGACTTTTCAGCTGGTCTCGGGCCAGAAAGTCTCACAAACCGCCTC
ACAATCCTTGAGTTTTTTTTTTAATATGTTATGTTATGTATTCCCATATG
TATAGTATTATTAAGTGTGGACGGCCCATGAAAATGCGACTAAAAAGACT
CGAATGATAGCCGTCTAGAGGCGTAGCTGTCGGTTGATGGAGTTTAGCGC
GACGGTAACATCGTCATGCGACATCCGTGTTCTCTCGCCACCCCTCCCTC
CCTCCCTAAAAAAACAAATGTAACCTCCGTGTTTATATTCTCTCGTCGTG
GTGTACGTAAGACAACCATCTTGGCGGATTACCCTATTAATACTGGAGCC
GGTCGCGGCGGGATACGTATCGCCGGCTTTGGAGGTGAAGGTTAAATAGC
ACAGCGGCGCACCATCCTGGAGGCGTAGGGAGATTTCTCGTAGCACGCTC
GAAGTTAACGTGAATTATGAGTTCCCCCCCAGGGGCCGTCGATCGAACGG
CCGATGACACAGGCCAAACATTAGAAGGGGACGCAAACAATTGTGGTAGC
GGCGATATTCTTGAGGGGATAGACGCCTGCCTACGGCGGTGGAAAGCCGC
GCGGCGCGAGGGCCAAGTCGTGCTGGCGGGGCTGAGCAACGCCCTGTTGC
TCAGAACGTATGCCGAGCAGGAAAGAGGCGCCTCTGCCAGTCATGTCTGG
GGCGCGCTTTCCTCGGCGGGGACGGCGGTGCCAAGGGTAGCTCTGGCTAT
AGAAGCGCGAGCACGTCGTCTCCACGAGGACCTGAGCGCTCTCCAGGACG
CGATGGTCGCCGCCGCGGCGGGGGTCCGCCGGCACGCACAAGAGGCACGG
CGCCAGTGTTACCCTGAACGAGAGGCTGCCCCTCTAGACGGATGCGCCGC
CCCCGCGAGCCCCATGGCCGCCTGGAAGGGTGGCACAAAGGCCACGTCCA
CGAGTAGCGTTGCCGCTGTGGTCGGGGGTGGGTACGCTATGGAAGATGTT
GCCGACGCGGCGTCCGAGGTGTCGGAGATGTTGCTGCGAGAGGCTCTTGT
TACCGCCACGGTGGTGCATAGGGTGGGGGAATGCCAAGATGATCGACATG
CGTTGACAATGTACGCGGCTGCGTGGATGATGCAGCCGTATCTAGACACC
GGGCGGGGTAGCGATCTCGAGGTCATGGTTGGGGCAAGAAGGCGGAAATC
AACTTTGCCGTGATATTTCGCAAAAGTAAAGTGGAATATACAATGTA
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Coding sequence (CDS) from alignment at H-elongata_contig79530:1523..2919+

>mRNA_H-elongata_contig79530.15607.1 ID=mRNA_H-elongata_contig79530.15607.1|Name=mRNA_H-elongata_contig79530.15607.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1494bp|location=Sequence derived from alignment at H-elongata_contig79530:1523..2919+ (Himanthalia elongata Himel1 dioecious)
ATGAGTTCCCCCCCAGGGGCCGTCGATCGAACGGCCGATGACACAGGCCA
AACATTAGAAGGGGACGCAAACAATTGTGGTAGCGGCGATATTCTTGAGG
GGATAGACGCCTGCCTACGGCGGTGGAAAGCCGCGCGGCGCGAGGGCCAA
GTCGTGCTGGCGGGGCTGAGCAACGCCCTGTTGCTCAGAACGTATGCCGA
GCAGGAAAGAGGCGCCTCTGCCAGTCATGTCTGGGGCGCGCTTTCCTCGG
CGGGGACGGCGGTGCCAAGGGTAGCTCTGGCTATAGAAGCGCGAGCACGT
CGTCTCCACGAGGACCTGAGCGCTCTCCAGGACGCGATGGTCGCCGCCGC
GGCGGGGGTCCGCCGGCACGCACAAGAGGCACGGCGCCAGTGTTACCCTG
AACGAGAGGCTGCCCCTCTAGACGGATGCGCCGCCCCCGCGAGCCCCATG
GCCGCCTGGAAGGGTGGCACAAAGGCCACGTCCACGAGTAGCGTTGCCGC
TGTGGTCGGGGGTGGGTACGCTATGGAAGATGTTGCCGACGCGGCGTCCG
AGGTGTCGGAGATGTTGCTGCGAGAGGCTCTTGTTACCGCCACGGTGGTG
CATAGGGTGGGGGAATGCCAAGATGATCGACATGCGTTGACAATGTACGC
GGCTGCGTGGATGATGCAGCCGTATCTAGACACCGGGCGGGGTAGCGATC
TCGAGGTCATGGTTGGGGCAAGAAGGCGGAAATCAACTTTGCCGTGAATG
AGTTCCCCCCCAGGGGCCGTCGATCGAACGGCCGATGACACAGGCCAAAC
ATTAGAAGGGGACGCAAACAATTGTGGTAGCGGCGATATTCTTGAGGGGA
TAGACGCCTGCCTACGGCGGTGGAAAGCCGCGCGGCGCGAGGGCCAAGTC
GTGCTGGCGGGGCTGAGCAACGCCCTGTTGCTCAGAACGTATGCCGAGCA
GGAAAGAGGCGCCTCTGCCAGTCATGTCTGGGGCGCGCTTTCCTCGGCGG
GGACGGCGGTGCCAAGGGTAGCTCTGGCTATAGAAGCGCGAGCACGTCGT
CTCCACGAGGACCTGAGCGCTCTCCAGGACGCGATGGTCGCCGCCGCGGC
GGGGGTCCGCCGGCACGCACAAGAGGCACGGCGCCAGTGTTACCCTGAAC
GAGAGGCTGCCCCTCTAGACGGATGCGCCGCCCCCGCGAGCCCCATGGCC
GCCTGGAAGGGTGGCACAAAGGCCACGTCCACGAGTAGCGTTGCCGCTGT
GGTCGGGGGTGGGTACGCTATGGAAGATGTTGCCGACGCGGCGTCCGAGG
TGTCGGAGATGTTGCTGCGAGAGGCTCTTGTTACCGCCACGGTGGTGCAT
AGGGTGGGGGAATGCCAAGATGATCGACATGCGTTGACAATGTACGCGGC
TGCGTGGATGATGCAGCCGTATCTAGACACCGGGCGGGGTAGCGATCTCG
AGGTCATGGTTGGGGCAAGAAGGCGGAAATCAACTTTGCCGTGA
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