mRNA_H-elongata_contig7942.15598.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig7942.15598.1
Unique NamemRNA_H-elongata_contig7942.15598.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig7942.15598.1 vs. uniprot
Match: D7G208_ECTSI (Kri1_C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G208_ECTSI)

HSP 1 Score: 186 bits (473), Expect = 6.460e-49
Identity = 118/185 (63.78%), Postives = 130/185 (70.27%), Query Frame = 1 
Query:   25 RWDSVTERAFGDGYYEAEDADDGWKPGDDPLEGLGDLDRYTKQPEPDGVGADGSGNLDAVKEEIDD----------DGEEGQEVGEEXXXXXXXXGEEEADGAGEVFGTLGAQKEKLLGELYKLDYEDIIGDIPCRLFKYTKVRPSDFGLSPGEILLADDKELNKYVPLKKLAPYRADEPKLDAR 549
            +WD VT +AFGDGYYEAEDADDGWKPGDDPLEGLGDLD+Y    EP     D +  +                   +GE+       XXXXXXXXG EE     E F  +GAQKE+LL ELYKLDYEDI+GDIPCR FKYTKV+ +DFGLS  EILLADDKELNKYVPLKKLAPYR DEPKLDAR
Sbjct:  442 QWDDVTGKAFGDGYYEAEDADDGWKPGDDPLEGLGDLDQYNAA-EPAAAETDSNDGMAXXXXXXXXXXXXXVGGGWEGEDXXXXXXXXXXXXXXXGGEEE----EEFAGMGAQKERLLDELYKLDYEDIVGDIPCR-FKYTKVKSNDFGLSAEEILLADDKELNKYVPLKKLAPYRKDEPKLDAR 620
[Close]
BLAST of mRNA_H-elongata_contig7942.15598.1 vs. uniprot
Match: A0A4P1QVY8_LUPAN (Kri1_C domain-containing protein n=3 Tax=Lupinus TaxID=3869 RepID=A0A4P1QVY8_LUPAN)

HSP 1 Score: 99.4 bits (246), Expect = 5.000e-19
Identity = 84/195 (43.08%), Postives = 113/195 (57.95%), Query Frame = 1 
Query:   28 WDSVTERAFGDGYYEAEDADDGWKPGDDPLEGLGDLDRYTKQPEPDGV------GADGSGNLDA----VKEEIDDDGEEGQEVGEEXXXXXXXXGEEEADGAGEVFGTLGAQKEKLLGELYKLDYEDIIGDIPCRLFKYTKVRPSDFGLSPGEILLADDKELNKYVPLKKLAPYRADEPKLDARHRRRLREEIKE 582
            +D + ++AF D YY AEDAD G+   DD +E       + K+ E  G+      G  G G L A    +KE+I++  ++  ++ E  XXXXXX  EE +         L   ++ ++ E YKLDYED IGD+  R FKY K +PS FG+S  EILL DDKELN+YV LKKLAPYR +E KL    R +L+   KE
Sbjct:  388 YDRMMKKAFDDKYYNAEDADPGFCSDDDDME----KPDFEKEDELLGLPKGWDEGGSGDGFLAAREKVLKEKIENTSDD--DLQETEXXXXXXIPEEGSRKRKRKTALLEKARQAMMDEYYKLDYEDTIGDLKTR-FKYAKTKPSRFGMSAPEILLMDDKELNQYVSLKKLAPYREEEWKLSKLKRYQLKMRTKE 575
[Close]
BLAST of mRNA_H-elongata_contig7942.15598.1 vs. uniprot
Match: A0A4D9CR12_9STRA (Kri1_C domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CR12_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 5.480e-19
Identity = 70/140 (50.00%), Postives = 88/140 (62.86%), Query Frame = 1 
Query:  181 GSGNLDA--VKEEIDD---DGEEGQEVGEEXXXXXXXXGEEEADGAGEVFGTLGAQKEKLLGELYKLDYEDIIGDIPCRLFKYTKVRPSDFGLSPGEILLADDKELNKYVPLKKLAPYRADEPKLDARHRRRLREEIKER 585
            G G +DA  ++EE D    D E G+  GEE        GEEE  G  E      A +EKL+ ELY+LDYEDIIGD+PCR FKY +V  +DFGL+  EIL ADD ELNK+V LKKL PYR +E    ++ R R RE +K++
Sbjct:  496 GGGRVDASILEEEWDPAAWDAEMGKAFGEEYYE-----GEEEQGGEKEAK----ALEEKLMEELYELDYEDIIGDLPCR-FKYRRVEGNDFGLTAEEILAADDGELNKFVSLKKLNPYREEEYWPKSKQRHRFREALKKK 625
[Close]
BLAST of mRNA_H-elongata_contig7942.15598.1 vs. uniprot
Match: A0A8B8LNW5_ABRPR (protein KRI1 homolog isoform X1 n=2 Tax=Abrus precatorius TaxID=3816 RepID=A0A8B8LNW5_ABRPR)

HSP 1 Score: 96.3 bits (238), Expect = 5.420e-18
Identity = 80/205 (39.02%), Postives = 110/205 (53.66%), Query Frame = 1 
Query:   28 WDSVTERAFGDGYYEAEDADDGWKPGDDPLEGLGDLDRYTKQPEPDGV--GADGSGNLD--------AVKEEI----DDDGEEGQEVGEEXXXXXXXXGEEEADGAGEVFGTLGAQKEKLLGELYKLDYEDIIGDIPCRLFKYTKVRPSDFGLSPGEILLADDKELNKYVPLKKLAPYRADEPKLDARHRRRLREEIKEREKAAN 600
            +D + + AF D YY AEDAD  +   DD +E       + K+ E  G+  G D SG+ D        A+KE+I    DDD  + ++  EE          +           L   ++ ++ E YKLDYED IGD+  R FKY K +P+ FG++  EILL DDKELN+YV LKKLAPYR +E KL  + R  L+   KE  +AA+
Sbjct:  398 YDRMMKAAFDDKYYNAEDADPDFCSDDDDIE----KPDFEKEDELLGLPKGWDASGSNDGFLAAREKALKEKIESASDDDLLDREDQNEEKIPVEGSRKRKRKTA------LLEKARQAMMDEYYKLDYEDTIGDLKTR-FKYAKTKPNRFGMNASEILLMDDKELNQYVALKKLAPYREEEWKLSKQKRYMLKTRTKELLRAAS 591
[Close]
BLAST of mRNA_H-elongata_contig7942.15598.1 vs. uniprot
Match: S8CQ46_9LAMI (Kri1_C domain-containing protein (Fragment) n=1 Tax=Genlisea aurea TaxID=192259 RepID=S8CQ46_9LAMI)

HSP 1 Score: 93.2 bits (230), Expect = 4.830e-17
Identity = 76/192 (39.58%), Postives = 102/192 (53.12%), Query Frame = 1 
Query:   28 WDSVTERAFGDGYYEAEDADDGWKPGDDPLEGLGDLDRYTKQPEPDGVGADGSGNLDAV------KEEIDDDGEEGQEVGEEXXXXXXXXGEEEADGAGEVFGTLG-AQKEKLLGELYKLDYEDIIGDIPCRLFKYTKVRPSDFGLSPGEILLADDKELNKYVPLKKLAPYRADEPKLDARHRRRLREEIKE 582
            +D   + AFGD YY+AEDAD G+    D L          ++ E  G+G   SG L+        +E +DD     +EVG E         E      G+  G L  A +++L+ E YKLDYED IGD+  R FKY  V+   +GL P E+L  DDK+LN+YV LKKLAPY+  E K+      +LRE+ KE
Sbjct:  362 YDRKMKEAFGDSYYDAEDADPGFGSDGDDL---------NEEDEELGLGNASSGFLNTRDKILKNQEAVDD----AKEVGGEGGKKRKRRSE------GQEIGELEKAVRDQLMEEYYKLDYEDTIGDLKTR-FKYKSVKAKRYGLRPDEVLSMDDKDLNQYVSLKKLAPYQEKEWKVPRIKTVQLREKKKE 533
[Close]
BLAST of mRNA_H-elongata_contig7942.15598.1 vs. uniprot
Match: A0A314YRK4_PRUYE (Protein kri1 n=1 Tax=Prunus yedoensis var. nudiflora TaxID=2094558 RepID=A0A314YRK4_PRUYE)

HSP 1 Score: 90.1 bits (222), Expect = 6.600e-17
Identity = 70/192 (36.46%), Postives = 105/192 (54.69%), Query Frame = 1 
Query:   28 WDSVTERAFGDGYYEAEDADDGWKPGDDPLEGLGDLDR--YTKQPE----PDGVGADGSGN-LDAVKEEIDDDGEEGQEVGEEXXXXXXXXGEEEADGAGEVFGTLGAQKEKLLGELYKLDYEDIIGDIPCRLFKYTKVRPSDFGLSPGEILLADDKELNKYVPLKKLAPYRADEPKLDARHRRRLREEIKE 582
            +D + ++AFG+ YYEAEDAD  +  G D  E  G++++  + K+ E    P G  + GSG+   A +E++                      EE           L   K++++ E YKLDYED IGD+  R FKY K++ + +GLS  EIL+ D+KELN+YV LKKLAPY   E K+    R  +++++KE
Sbjct:   28 YDRMMKKAFGEEYYEAEDADLAF--GSDMDEDGGEIEKLDFDKEDELLGLPKGWDSVGSGDGFLAAREKV------------LKLKKENVVSEEGKQEKKRKLALLERAKKEMMDEYYKLDYEDTIGDLKTR-FKYAKIKRNRYGLSTAEILVMDEKELNQYVSLKKLAPYTEKEWKVPNNKRNEIKQKVKE 204
[Close]
BLAST of mRNA_H-elongata_contig7942.15598.1 vs. uniprot
Match: A0A2G9H1I9_9LAMI (KRR1-interacting protein involved in 40S ribosome biogenesis n=1 Tax=Handroanthus impetiginosus TaxID=429701 RepID=A0A2G9H1I9_9LAMI)

HSP 1 Score: 92.4 bits (228), Expect = 9.190e-17
Identity = 74/184 (40.22%), Postives = 102/184 (55.43%), Query Frame = 1 
Query:   28 WDSVTERAFGDGYYEAEDADDGWKPGDDPLEGLGDLDR--YTKQPEP-------DGVGADGSGNLDA----VKEEIDDDGEEGQEVGEEXXXXXXXXGEEEADGAGEVFGTLGAQKEKLLGELYKLDYEDIIGDIPCRLFKYTKVRPSDFGLSPGEILLADDKELNKYVPLKKLAPYRADEPKL 540
            +D   + AFGDGYYEAED D  +  G DP E    L++  + K+ E        D V   G G + A    +KE + D G++  E+G++          +      EV   +   +E+L+ E YKLDYED IGD+  R FKY  V P  +GL+P E+L+ D+KELN+YV LKKLAPYR  E K+
Sbjct:  371 YDKKMKEAFGDGYYEAEDVDPEF--GSDPAEDDVGLEKPDFDKEDELLGLPKGWDDVNKSGEGFISARQRILKERVVD-GDD-NEIGKDGDNEPKEGKRKRKRKPSEVEKAV---REQLMEEYYKLDYEDTIGDLKTR-FKYKTVNPKRYGLTPEEMLMMDEKELNQYVSLKKLAPYREKEWKV 546
[Close]
BLAST of mRNA_H-elongata_contig7942.15598.1 vs. uniprot
Match: A0A6B2L1D2_9EUKA (Kri1_C domain-containing protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2L1D2_9EUKA)

HSP 1 Score: 91.3 bits (225), Expect = 1.860e-16
Identity = 45/74 (60.81%), Postives = 55/74 (74.32%), Query Frame = 1 
Query:  337 EKLLGELYKLDYEDIIGDIPCRLFKYTKVRPSDFGLSPGEILLADDKELNKYVPLKKLAPYRADEPKLDARHRR 558
            +K L E YKLDYEDI+G IPCR FKYTKV+P D+GL   EIL+ADD +L K +PLK+L PYR D+ +L    RR
Sbjct:  399 DKYLEEYYKLDYEDIVGGIPCR-FKYTKVKPLDYGLDSHEILMADDTDLRKIIPLKRLNPYREDQGELPPHKRR 471
[Close]
BLAST of mRNA_H-elongata_contig7942.15598.1 vs. uniprot
Match: A0A7S2RF90_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RF90_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 2.800e-16
Identity = 43/84 (51.19%), Postives = 62/84 (73.81%), Query Frame = 1 
Query:  331 QKEKLLGELYKLDYEDIIGDIPCRLFKYTKVRPSDFGLSPGEILLADDKELNKYVPLKKLAPYRADEPKLDARHRRRLREEIKE 582
            + +KL+ E+ + +Y+D+IGD+P R FKYT+V   DFGLS  EIL+ADDK LN +V LKKL PYR D  K+D + R+  R+++K+
Sbjct:    7 EAKKLMEEMSRFEYDDLIGDMPTR-FKYTQVPKEDFGLSAEEILMADDKLLNSFVSLKKLVPYRMDPIKIDTKKRKSFRQKLKQ 89
[Close]
BLAST of mRNA_H-elongata_contig7942.15598.1 vs. uniprot
Match: UPI0010A2BE8C (protein KRI1 homolog n=2 Tax=Prosopis alba TaxID=207710 RepID=UPI0010A2BE8C)

HSP 1 Score: 90.5 bits (223), Expect = 4.420e-16
Identity = 45/83 (54.22%), Postives = 61/83 (73.49%), Query Frame = 1 
Query:  334 KEKLLGELYKLDYEDIIGDIPCRLFKYTKVRPSDFGLSPGEILLADDKELNKYVPLKKLAPYRADEPKLDARHRRRLREEIKE 582
            ++ ++ E YKLDYED IGD+  R FKY K +P+ FGLS  E+L+ D+KELN+Y+ LKKLAPYR +E KL  R R  L+++ KE
Sbjct:  486 RQAMMDEYYKLDYEDTIGDLKTR-FKYAKTKPNRFGLSASELLMMDEKELNQYISLKKLAPYREEEWKLSKRKRYELKQKTKE 567
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7942.15598.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G208_ECTSI6.460e-4963.78Kri1_C domain-containing protein n=2 Tax=Ectocarpu... [more]
A0A4P1QVY8_LUPAN5.000e-1943.08Kri1_C domain-containing protein n=3 Tax=Lupinus T... [more]
A0A4D9CR12_9STRA5.480e-1950.00Kri1_C domain-containing protein n=1 Tax=Nannochlo... [more]
A0A8B8LNW5_ABRPR5.420e-1839.02protein KRI1 homolog isoform X1 n=2 Tax=Abrus prec... [more]
S8CQ46_9LAMI4.830e-1739.58Kri1_C domain-containing protein (Fragment) n=1 Ta... [more]
A0A314YRK4_PRUYE6.600e-1736.46Protein kri1 n=1 Tax=Prunus yedoensis var. nudiflo... [more]
A0A2G9H1I9_9LAMI9.190e-1740.22KRR1-interacting protein involved in 40S ribosome ... [more]
A0A6B2L1D2_9EUKA1.860e-1660.81Kri1_C domain-containing protein n=1 Tax=Arcella i... [more]
A0A7S2RF90_9STRA2.800e-1651.19Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
UPI0010A2BE8C4.420e-1654.22protein KRI1 homolog n=2 Tax=Prosopis alba TaxID=2... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig7942contigH-elongata_contig7942:7966..9853 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score191.4
Seed ortholog evalue7.4e-46
Seed eggNOG ortholog2880.D7G208
KEGG koko:K10592,ko:K14786
KEGG Pathwayko04120,map04120
EggNOG free text desc.endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
EggNOG OGsKOG2409@1,KOG2409@2759
EC2.3.2.26
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03009,ko04121
Hectar predicted targeting categoryother localisation
Exons3
Model size1113
Cds size1113
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig7942.15598.1prot_H-elongata_contig7942.15598.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig7942 7966..9853 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931198.7234595-CDS-H-elongata_contig7942:7965..86011622931198.7234595-CDS-H-elongata_contig7942:7965..8601Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7942 7966..8601 -
1691679738.0356488-CDS-H-elongata_contig7942:7965..86011691679738.0356488-CDS-H-elongata_contig7942:7965..8601Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7942 7966..8601 -
1622931198.7433627-CDS-H-elongata_contig7942:8793..88661622931198.7433627-CDS-H-elongata_contig7942:8793..8866Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7942 8794..8866 -
1691679738.0481114-CDS-H-elongata_contig7942:8793..88661691679738.0481114-CDS-H-elongata_contig7942:8793..8866Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7942 8794..8866 -
1622931198.7814672-CDS-H-elongata_contig7942:9449..98531622931198.7814672-CDS-H-elongata_contig7942:9449..9853Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7942 9450..9853 -
1691679738.060318-CDS-H-elongata_contig7942:9449..98531691679738.060318-CDS-H-elongata_contig7942:9449..9853Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7942 9450..9853 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig7942.15598.1

>prot_H-elongata_contig7942.15598.1 ID=prot_H-elongata_contig7942.15598.1|Name=mRNA_H-elongata_contig7942.15598.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=371bp
MHPPRPRPRWDSVTERAFGDGYYEAEDADDGWKPGDDPLEGLGDLDRYTK
QPEPDGVGADGSGNLDAVKEEIDDDGEEGQEVGEEEEYYEELDGEEEADG
AGEVFGTLGAQKEKLLGELYKLDYEDIIGDIPCRLFKYTKVRPSDFGLSP
GEILLADDKELNKYVPLKKLAPYRADEPKLDARHRRRLREEIKEREKAAN
EEMMALRAKKKRRGKRKAASSSPAPAPSPDVEATDAATPQRTSDHCVDPG
DVTVKLAGGKRRRRKKGQKKQRARKGGGGGGEDSDDVGGTQNVSDMVPRV
RPMTLPSTGAESNSGGLDPGNGGGGGASEAEVSGDSDTKYNNDANDTKGK
GKKKRRKRGRSSNEVAREAEG
back to top

mRNA from alignment at H-elongata_contig7942:7966..9853-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig7942.15598.1 ID=mRNA_H-elongata_contig7942.15598.1|Name=mRNA_H-elongata_contig7942.15598.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1888bp|location=Sequence derived from alignment at H-elongata_contig7942:7966..9853- (Himanthalia elongata Himel1 dioecious)
ATGCACCCCCCCCGTCCCCGTCCCAGGTGGGACTCCGTCACGGAGAGGGC
GTTCGGGGATGGTTATTACGAGGCGGAGGACGCAGACGATGGATGGAAGC
CTGGAGACGATCCCTTGGAAGGCCTCGGTGACCTTGATCGATACACGAAG
CAACCCGAACCCGACGGAGTTGGTGCCGATGGAAGCGGCAACTTGGATGC
TGTCAAGGAGGAGATAGATGATGACGGCGAGGAAGGACAGGAAGTAGGTG
AGGAAGAGGAGTACTACGAGGAGTTGGATGGAGAGGAGGAAGCTGACGGA
GCGGGAGAAGTGTTCGGGACCCTGGGGGCGCAGAAAGAGAAGCTGTTGGG
CGAGCTCTACAAGCTGGACTACGAGGACATCATCGGGGACATCCCTTGCA
GGTTGTTGGCGGGGGGTTTTAACTCCGTTGATGGTAGATTTTTGGTGAAA
TAGCTGCGTCCCGTGAAAGTGATTGCGGATAAAGCACCACGCTTTCCGAA
GACCTCGAGATTTTCCTGGGACCAACGCTCGAGAAGCTATAGCTCAACAG
CTAGAAACCACGAAGCCCCTTGAATACGGAAATTGTGGGCGGTTCGAATC
GTTCTAGATTTAAAAAACAACAACTCTGCAGCGGTATTGAAACGTGATAA
AAAGAACGACGGGAGTGATTAAGCAAAGTTCAACCTTTGATGATTGGCTT
ACAACGAGGTGTAGGAGTGCTAGAGGGGGAGATGAGTTCATCCTCTAGGA
CCGCGAGTGAGAGGGGAAAATAGCACGTTGAAAGGCCCATCGGCAGAAAG
TGATATATATATATATATAATATATCCGCGTCCGTCCCGCATACGTGCAC
TATTCTCGGCAATGTAAATGCGCTATCATCCGCGCTGCGAGGGTTGATGA
TTGCCACGCGTTTGACCCATCAAGGCGGCGCCTTCTTCCATTGGGTTTCC
ATTCGCGTACGGGGGGTGGGTGGGGGGGTGTTTACAGGTTTAAGTACACC
AAGGTCAGGCCTAGCGACTTCGGGCTGTCACCCGGGGAAATCTTGCTCGC
CGATGACAAGGTCTGTCCTTTCGCTTGCACTTTGATTCGCTGTGAGGATG
GACAGCGTAGCGCTTGTCTCCACACACCCGCGGGGTAGCTGTCTGCACCA
TAATATTTGACTCAAAAATTATCGATCCTCTTGAGCACGAAGCCGGCGTC
TTATCTACCCCGCCTGTACACTGCTCCCGTTGACGCTGCCGTTCCCCAAA
AGGAGTTGAACAAGTACGTGCCGCTCAAGAAACTCGCCCCTTACCGCGCG
GACGAGCCGAAACTGGATGCTCGCCACCGCCGCCGCCTGAGAGAGGAAAT
CAAGGAGAGGGAGAAGGCCGCAAATGAGGAGATGATGGCCTTGCGCGCGA
AGAAGAAGCGACGTGGCAAAAGGAAGGCGGCCTCGTCCTCCCCCGCCCCC
GCCCCCTCGCCTGATGTTGAAGCTACAGATGCCGCCACCCCACAAAGAAC
GTCCGACCACTGCGTGGACCCGGGTGACGTCACGGTGAAGCTTGCTGGAG
GCAAGAGGCGTCGGCGCAAGAAGGGGCAAAAAAAGCAGAGGGCCCGCAAG
GGTGGAGGTGGTGGTGGCGAGGACAGCGACGATGTTGGAGGCACACAAAA
TGTTTCCGATATGGTGCCTCGCGTACGGCCGATGACATTACCTTCTACCG
GCGCGGAAAGTAACTCGGGCGGCCTTGATCCAGGGAATGGCGGAGGGGGA
GGAGCAAGCGAGGCCGAAGTGTCGGGGGATAGTGATACCAAATATAATAA
TGACGCCAATGACACGAAGGGCAAGGGCAAGAAGAAGAGGCGGAAGCGAG
GTCGATCTTCGAACGAGGTCGCGAGAGAGGCGGAGGGG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig7942:7966..9853-

>mRNA_H-elongata_contig7942.15598.1 ID=mRNA_H-elongata_contig7942.15598.1|Name=mRNA_H-elongata_contig7942.15598.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2226bp|location=Sequence derived from alignment at H-elongata_contig7942:7966..9853- (Himanthalia elongata Himel1 dioecious)
ATGCACCCCCCCCGTCCCCGTCCCAGGTGGGACTCCGTCACGGAGAGGGC
GTTCGGGGATGGTTATTACGAGGCGGAGGACGCAGACGATGGATGGAAGC
CTGGAGACGATCCCTTGGAAGGCCTCGGTGACCTTGATCGATACACGAAG
CAACCCGAACCCGACGGAGTTGGTGCCGATGGAAGCGGCAACTTGGATGC
TGTCAAGGAGGAGATAGATGATGACGGCGAGGAAGGACAGGAAGTAGGTG
AGGAAGAGGAGTACTACGAGGAGTTGGATGGAGAGGAGGAAGCTGACGGA
GCGGGAGAAGTGTTCGGGACCCTGGGGGCGCAGAAAGAGAAGCTGTTGGG
CGAGCTCTACAAGCTGGACTACGAGGACATCATCGGGGACATCCCTTGCA
GGTTATGCACCCCCCCCGTCCCCGTCCCAGGTGGGACTCCGTCACGGAGA
GGGCGTTCGGGGATGGTTATTACGAGGCGGAGGACGCAGACGATGGATGG
AAGCCTGGAGACGATCCCTTGGAAGGCCTCGGTGACCTTGATCGATACAC
GAAGCAACCCGAACCCGACGGAGTTGGTGCCGATGGAAGCGGCAACTTGG
ATGCTGTCAAGGAGGAGATAGATGATGACGGCGAGGAAGGACAGGAAGTA
GGTGAGGAAGAGGAGTACTACGAGGAGTTGGATGGAGAGGAGGAAGCTGA
CGGAGCGGGAGAAGTGTTCGGGACCCTGGGGGCGCAGAAAGAGAAGCTGT
TGGGCGAGCTCTACAAGCTGGACTACGAGGACATCATCGGGGACATCCCT
TGCAGGTTGTTTAAGTACACCAAGGTCAGGCCTAGCGACTTCGGGCTGTC
ACCCGGGGAAATCTTGCTCGCCGATGACAAGGTTTAAGTACACCAAGGTC
AGGCCTAGCGACTTCGGGCTGTCACCCGGGGAAATCTTGCTCGCCGATGA
CAAGGAGTTGAACAAGTACGTGCCGCTCAAGAAACTCGCCCCTTACCGCG
CGGACGAGCCGAAACTGGATGCTCGCCACCGCCGCCGCCTGAGAGAGGAA
ATCAAGGAGAGGGAGAAGGCCGCAAATGAGGAGATGATGGCCTTGCGCGC
GAAGAAGAAGCGACGTGGCAAAAGGAAGGCGGCCTCGTCCTCCCCCGCCC
CCGCCCCCTCGCCTGATGTTGAAGCTACAGATGCCGCCACCCCACAAAGA
ACGTCCGACCACTGCGTGGACCCGGGTGACGTCACGGTGAAGCTTGCTGG
AGGCAAGAGGCGTCGGCGCAAGAAGGGGCAAAAAAAGCAGAGGGCCCGCA
AGGGTGGAGGTGGTGGTGGCGAGGACAGCGACGATGTTGGAGGCACACAA
AATGTTTCCGATATGGTGCCTCGCGTACGGCCGATGACATTACCTTCTAC
CGGCGCGGAAAGTAACTCGGGCGGCCTTGATCCAGGGAATGGCGGAGGGG
GAGGAGCAAGCGAGGCCGAAGTGTCGGGGGATAGTGATACCAAATATAAT
AATGACGCCAATGACACGAAGGGCAAGGGCAAGAAGAAGAGGCGGAAGCG
AGGTCGATCTTCGAACGAGGTCGCGAGAGAGGCGGAGGGGGAGTTGAACA
AGTACGTGCCGCTCAAGAAACTCGCCCCTTACCGCGCGGACGAGCCGAAA
CTGGATGCTCGCCACCGCCGCCGCCTGAGAGAGGAAATCAAGGAGAGGGA
GAAGGCCGCAAATGAGGAGATGATGGCCTTGCGCGCGAAGAAGAAGCGAC
GTGGCAAAAGGAAGGCGGCCTCGTCCTCCCCCGCCCCCGCCCCCTCGCCT
GATGTTGAAGCTACAGATGCCGCCACCCCACAAAGAACGTCCGACCACTG
CGTGGACCCGGGTGACGTCACGGTGAAGCTTGCTGGAGGCAAGAGGCGTC
GGCGCAAGAAGGGGCAAAAAAAGCAGAGGGCCCGCAAGGGTGGAGGTGGT
GGTGGCGAGGACAGCGACGATGTTGGAGGCACACAAAATGTTTCCGATAT
GGTGCCTCGCGTACGGCCGATGACATTACCTTCTACCGGCGCGGAAAGTA
ACTCGGGCGGCCTTGATCCAGGGAATGGCGGAGGGGGAGGAGCAAGCGAG
GCCGAAGTGTCGGGGGATAGTGATACCAAATATAATAATGACGCCAATGA
CACGAAGGGCAAGGGCAAGAAGAAGAGGCGGAAGCGAGGTCGATCTTCGA
ACGAGGTCGCGAGAGAGGCGGAGGGG
back to top