mRNA_H-elongata_contig79402.15596.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig79402.15596.1
Unique NamemRNA_H-elongata_contig79402.15596.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig79402.15596.1 vs. uniprot
Match: A0A6H5L2R7_9PHAE (PRA-CH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2R7_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 9.720e-12
Identity = 27/33 (81.82%), Postives = 30/33 (90.91%), Query Frame = 1 
Query:    1 QELRGASVDCDSDALRFTVVQHGDPPAFCHFNR 99
            QELRG +VDCDSDA++FTV QHG PPAFCHFNR
Sbjct:  284 QELRGITVDCDSDAIKFTVWQHGSPPAFCHFNR 316
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BLAST of mRNA_H-elongata_contig79402.15596.1 vs. uniprot
Match: D8LDR4_ECTSI (Phosphoribosyl-AMP cyclohydrolase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDR4_ECTSI)

HSP 1 Score: 67.0 bits (162), Expect = 9.760e-12
Identity = 27/33 (81.82%), Postives = 30/33 (90.91%), Query Frame = 1 
Query:    1 QELRGASVDCDSDALRFTVVQHGDPPAFCHFNR 99
            QELRG +VDCDSDA++FTV QHG PPAFCHFNR
Sbjct:  328 QELRGITVDCDSDAIKFTVWQHGSPPAFCHFNR 360
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BLAST of mRNA_H-elongata_contig79402.15596.1 vs. uniprot
Match: A0A835ZKL0_9STRA (PRA-CH domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZKL0_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 1.070e-9
Identity = 26/33 (78.79%), Postives = 27/33 (81.82%), Query Frame = 1 
Query:    1 QELRGASVDCDSDALRFTVVQHGDPPAFCHFNR 99
            Q L   S+DCDSDALRF VVQHG PPAFCHFNR
Sbjct:  312 QALLALSMDCDSDALRFLVVQHGAPPAFCHFNR 344
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BLAST of mRNA_H-elongata_contig79402.15596.1 vs. uniprot
Match: A0A7S2V4U4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V4U4_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 3.720e-9
Identity = 25/33 (75.76%), Postives = 27/33 (81.82%), Query Frame = 1 
Query:    1 QELRGASVDCDSDALRFTVVQHGDPPAFCHFNR 99
            QEL+G S+DCDSDAL F V Q GDPPAFCH NR
Sbjct:  286 QELKGISIDCDSDALCFRVDQKGDPPAFCHLNR 318
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BLAST of mRNA_H-elongata_contig79402.15596.1 vs. uniprot
Match: A0A7S4MC83_9EUKA (Phosphoribosyl-AMP cyclohydrolase (Fragment) n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4MC83_9EUKA)

HSP 1 Score: 56.2 bits (134), Expect = 5.480e-9
Identity = 24/38 (63.16%), Postives = 26/38 (68.42%), Query Frame = 1 
Query:    1 QELRGASVDCDSDALRFTVVQHGDPPAFCHFNRLGSTG 114
            Q L    +DCD DALRFTV QHG+PPAFCH N L   G
Sbjct:   47 QTLHRIGLDCDHDALRFTVTQHGEPPAFCHKNSLTCWG 84
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BLAST of mRNA_H-elongata_contig79402.15596.1 vs. uniprot
Match: A0A7S3YIB2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YIB2_HETAK)

HSP 1 Score: 54.7 bits (130), Expect = 6.340e-8
Identity = 22/29 (75.86%), Postives = 23/29 (79.31%), Query Frame = 1 
Query:   13 GASVDCDSDALRFTVVQHGDPPAFCHFNR 99
            G  +DCDSDAL FTV QHGDP AFCH NR
Sbjct:    1 GIGLDCDSDALCFTVAQHGDPAAFCHLNR 29
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BLAST of mRNA_H-elongata_contig79402.15596.1 vs. uniprot
Match: A0A7S0L134_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0L134_9EUKA)

HSP 1 Score: 55.8 bits (133), Expect = 8.510e-8
Identity = 24/41 (58.54%), Postives = 27/41 (65.85%), Query Frame = 1 
Query:    1 QELRGASVDCDSDALRFTVVQHGDPPAFCHFNRLGSTGFAT 123
            Q L    +DCDSDALRF + QHG PPAFCH N L   G+ T
Sbjct:  341 QHLIRIQLDCDSDALRFVIQQHGVPPAFCHRNTLSCWGYPT 381
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BLAST of mRNA_H-elongata_contig79402.15596.1 vs. uniprot
Match: A0A7S0E3V5_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0E3V5_9EUKA)

HSP 1 Score: 54.7 bits (130), Expect = 1.350e-7
Identity = 24/41 (58.54%), Postives = 27/41 (65.85%), Query Frame = 1 
Query:    1 QELRGASVDCDSDALRFTVVQHGDPPAFCHFNRLGSTGFAT 123
            Q L    +DCD DA+RFTV QHGDPPAFCH   L   G A+
Sbjct:   81 QTLLRVELDCDHDAIRFTVSQHGDPPAFCHKQSLSCWGPAS 121
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BLAST of mRNA_H-elongata_contig79402.15596.1 vs. uniprot
Match: A0A7R9UQV6_DIALT (Hypothetical protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A7R9UQV6_DIALT)

HSP 1 Score: 53.5 bits (127), Expect = 5.560e-7
Identity = 23/30 (76.67%), Postives = 25/30 (83.33%), Query Frame = 1 
Query:    1 QELRGASVDCDSDALRFTVVQHGDPPAFCH 90
            QEL+   VDCDSDALRFTV Q G+PPAFCH
Sbjct:  226 QELQRIEVDCDSDALRFTVRQLGEPPAFCH 255
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BLAST of mRNA_H-elongata_contig79402.15596.1 vs. uniprot
Match: A0A7S2WIY7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WIY7_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 7.610e-7
Identity = 23/32 (71.88%), Postives = 24/32 (75.00%), Query Frame = 1 
Query:    1 QELRGASVDCDSDALRFTVVQHGDPPAFCHFN 96
            Q+L     DCDSDALRFTV QHG PPAFCH N
Sbjct:  274 QDLFLIQADCDSDALRFTVHQHGSPPAFCHRN 305
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig79402.15596.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
A0A6H5L2R7_9PHAE9.720e-1281.82PRA-CH domain-containing protein n=1 Tax=Ectocarpu... [more]
D8LDR4_ECTSI9.760e-1281.82Phosphoribosyl-AMP cyclohydrolase n=1 Tax=Ectocarp... [more]
A0A835ZKL0_9STRA1.070e-978.79PRA-CH domain-containing protein n=1 Tax=Tribonema... [more]
A0A7S2V4U4_9STRA3.720e-975.76Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S4MC83_9EUKA5.480e-963.16Phosphoribosyl-AMP cyclohydrolase (Fragment) n=1 T... [more]
A0A7S3YIB2_HETAK6.340e-875.86Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S0L134_9EUKA8.510e-858.54Hypothetical protein (Fragment) n=1 Tax=Coccolithu... [more]
A0A7S0E3V5_9EUKA1.350e-758.54Hypothetical protein (Fragment) n=1 Tax=Phaeocysti... [more]
A0A7R9UQV6_DIALT5.560e-776.67Hypothetical protein n=2 Tax=Diacronema lutheri Ta... [more]
A0A7S2WIY7_9STRA7.610e-771.88Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig79402contigH-elongata_contig79402:2232..2375 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score66.2
Seed ortholog evalue4.6e-09
Seed eggNOG ortholog2880.D8LDR4
Preferred nameHIS4
KEGG rclassRC00002,RC00099,RC00242,RC00463,RC01055
KEGG koko:K11755,ko:K14152
KEGG ReactionR01158,R01163,R03012,R04035,R04037
KEGG Pathwayko00340,ko01100,ko01110,ko01230,map00340,map01100,map01110,map01230
KEGG ModuleM00026
GOsGO:0000105,GO:0003674,GO:0003824,GO:0004399,GO:0004635,GO:0004636,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006547,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009987,GO:0016053,GO:0016462,GO:0016491,GO:0016614,GO:0016616,GO:0016787,GO:0016810,GO:0016814,GO:0016817,GO:0016818,GO:0018130,GO:0019238,GO:0019438,GO:0019752,GO:0030145,GO:0034641,GO:0043167,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0046872,GO:0046914,GO:0052803,GO:0055114,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607
EggNOG free text desc.phosphoribosyl-ATP diphosphatase activity
EggNOG OGsCOG0139@1,KOG4311@2759
EC1.1.1.23,3.5.4.19,3.6.1.31
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size144
Cds size144
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931198.55887-CDS-H-elongata_contig79402:2231..23751622931198.55887-CDS-H-elongata_contig79402:2231..2375Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79402 2232..2375 -
1691679738.0026932-CDS-H-elongata_contig79402:2231..23751691679738.0026932-CDS-H-elongata_contig79402:2231..2375Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79402 2232..2375 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig79402.15596.1prot_H-elongata_contig79402.15596.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig79402 2232..2375 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig79402.15596.1

>prot_H-elongata_contig79402.15596.1 ID=prot_H-elongata_contig79402.15596.1|Name=mRNA_H-elongata_contig79402.15596.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=48bp
QELRGASVDCDSDALRFTVVQHGDPPAFCHFNRLGSTGFATFVFGLVG
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mRNA from alignment at H-elongata_contig79402:2232..2375-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig79402.15596.1 ID=mRNA_H-elongata_contig79402.15596.1|Name=mRNA_H-elongata_contig79402.15596.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=144bp|location=Sequence derived from alignment at H-elongata_contig79402:2232..2375- (Himanthalia elongata Himel1 dioecious)
CAGGAGCTACGAGGCGCCTCGGTCGACTGCGACAGCGATGCCTTGAGGTT
TACCGTCGTGCAGCACGGCGATCCGCCCGCCTTCTGTCATTTCAACAGGT
TAGGCTCTACGGGCTTCGCGACTTTTGTCTTTGGCCTCGTAGGG
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Coding sequence (CDS) from alignment at H-elongata_contig79402:2232..2375-

>mRNA_H-elongata_contig79402.15596.1 ID=mRNA_H-elongata_contig79402.15596.1|Name=mRNA_H-elongata_contig79402.15596.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=288bp|location=Sequence derived from alignment at H-elongata_contig79402:2232..2375- (Himanthalia elongata Himel1 dioecious)
CAGGAGCTACGAGGCGCCTCGGTCGACTGCGACAGCGATGCCTTGAGGTT
TACCGTCGTGCAGCACGGCGATCCGCCCGCCTTCTGTCATTTCAACAGGT
TAGGCTCTACGGGCTTCGCGACTTTTGTCTTTGGCCTCGTAGGGCAGGAG
CTACGAGGCGCCTCGGTCGACTGCGACAGCGATGCCTTGAGGTTTACCGT
CGTGCAGCACGGCGATCCGCCCGCCTTCTGTCATTTCAACAGGTTAGGCT
CTACGGGCTTCGCGACTTTTGTCTTTGGCCTCGTAGGG
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