prot_H-elongata_contig79400.15594.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig79400.15594.1
Unique Nameprot_H-elongata_contig79400.15594.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length71
Homology
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BLAST of mRNA_H-elongata_contig79400.15594.1 vs. uniprot
Match: A0A6H5JP59_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP59_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 4.590e-26
Identity = 55/71 (77.46%), Postives = 60/71 (84.51%), Query Frame = 0 
Query:    1 GIKRDETVARELYEHGAKLGHPGSQHALSVLLASSA-EGGGEVEAILYDFFASMGGDALAHAAMGYRYMYG 70
            GIKRDE  AR LYE  AKLGHP SQHALS LLA SA EGG +VEA+LYDFFAS+GGD LAHAA+GYRY+YG
Sbjct:   92 GIKRDEDAARALYERAAKLGHPPSQHALSTLLAGSAGEGGEDVEAVLYDFFASLGGDPLAHAALGYRYLYG 162
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig79400.15594.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JP59_9PHAE4.590e-2677.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 1..70
e-value: 1.3E-5
score: 25.8
NoneNo IPR availableSUPERFAMILY81901HCP-likecoord: 2..69

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig79400contigH-elongata_contig79400:487..699 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig79400.15594.1mRNA_H-elongata_contig79400.15594.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig79400 487..699 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig79400.15594.1 ID=prot_H-elongata_contig79400.15594.1|Name=mRNA_H-elongata_contig79400.15594.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=71bp
GIKRDETVARELYEHGAKLGHPGSQHALSVLLASSAEGGGEVEAILYDFF
ASMGGDALAHAAMGYRYMYG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf