mRNA_H-elongata_contig79400.15594.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig79400.15594.1
Unique NamemRNA_H-elongata_contig79400.15594.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig79400.15594.1 vs. uniprot
Match: A0A6H5JP59_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP59_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 4.590e-26
Identity = 55/71 (77.46%), Postives = 60/71 (84.51%), Query Frame = 1 
Query:    1 GIKRDETVARELYEHGAKLGHPGSQHALSVLLASSA-EGGGEVEAILYDFFASMGGDALAHAAMGYRYMYG 210
            GIKRDE  AR LYE  AKLGHP SQHALS LLA SA EGG +VEA+LYDFFAS+GGD LAHAA+GYRY+YG
Sbjct:   92 GIKRDEDAARALYERAAKLGHPPSQHALSTLLAGSAGEGGEDVEAVLYDFFASLGGDPLAHAALGYRYLYG 162
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig79400.15594.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JP59_9PHAE4.590e-2677.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig79400contigH-elongata_contig79400:487..699 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Ec32 orthologEc-12_005790.1
Exons1
Model size213
Cds size213
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931198.4180882-CDS-H-elongata_contig79400:486..6991622931198.4180882-CDS-H-elongata_contig79400:486..699Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79400 487..699 -
1691679737.9706538-CDS-H-elongata_contig79400:486..6991691679737.9706538-CDS-H-elongata_contig79400:486..699Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79400 487..699 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig79400.15594.1prot_H-elongata_contig79400.15594.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig79400 487..699 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig79400.15594.1

>prot_H-elongata_contig79400.15594.1 ID=prot_H-elongata_contig79400.15594.1|Name=mRNA_H-elongata_contig79400.15594.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=71bp
GIKRDETVARELYEHGAKLGHPGSQHALSVLLASSAEGGGEVEAILYDFF
ASMGGDALAHAAMGYRYMYG*
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mRNA from alignment at H-elongata_contig79400:487..699-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig79400.15594.1 ID=mRNA_H-elongata_contig79400.15594.1|Name=mRNA_H-elongata_contig79400.15594.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=213bp|location=Sequence derived from alignment at H-elongata_contig79400:487..699- (Himanthalia elongata Himel1 dioecious)
GGAATCAAGAGGGACGAAACCGTGGCGCGCGAACTGTACGAGCACGGGGC
CAAGCTCGGTCACCCTGGGTCGCAGCATGCCCTGTCCGTTCTACTTGCGT
CGAGTGCCGAGGGAGGGGGCGAGGTGGAGGCAATCTTGTACGACTTCTTT
GCATCGATGGGGGGTGACGCACTTGCGCACGCTGCCATGGGCTATCGCTA
CATGTATGGGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig79400:487..699-

>mRNA_H-elongata_contig79400.15594.1 ID=mRNA_H-elongata_contig79400.15594.1|Name=mRNA_H-elongata_contig79400.15594.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=426bp|location=Sequence derived from alignment at H-elongata_contig79400:487..699- (Himanthalia elongata Himel1 dioecious)
GGAATCAAGAGGGACGAAACCGTGGCGCGCGAACTGTACGAGCACGGGGC
CAAGCTCGGTCACCCTGGGTCGCAGCATGCCCTGTCCGTTCTACTTGCGT
CGAGTGCCGAGGGAGGGGGCGAGGTGGAGGCAATCTTGTACGACTTCTTT
GCATCGATGGGGGGTGACGCACTTGCGCACGCTGCCATGGGCTATCGCTA
CATGTATGGGTAAGGAATCAAGAGGGACGAAACCGTGGCGCGCGAACTGT
ACGAGCACGGGGCCAAGCTCGGTCACCCTGGGTCGCAGCATGCCCTGTCC
GTTCTACTTGCGTCGAGTGCCGAGGGAGGGGGCGAGGTGGAGGCAATCTT
GTACGACTTCTTTGCATCGATGGGGGGTGACGCACTTGCGCACGCTGCCA
TGGGCTATCGCTACATGTATGGGTAA
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