mRNA_H-elongata_contig79317.15592.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig79317.15592.1 vs. uniprot
Match: A0A6H5JGJ0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGJ0_9PHAE) HSP 1 Score: 158 bits (400), Expect = 4.040e-45 Identity = 78/155 (50.32%), Postives = 106/155 (68.39%), Query Frame = 1
Query: 1 VDINTFHASHGHAPEKLLRSTAQQLGVVL-EGTLRECEGCSVAKELDKPIGRTTSTRADKVFGRLFVDICGEKSVASIGGKRYMLVICDDFSRFTWTHFMRQKSDTVALFEQFLADERVAGTPSVVEVVRSDEGGEFKGDFAKLCRRHNIRQQFT 462
D+N +H +HGHA E LLR TA+Q GV L +G L C GCS++K KP+ ++TSTRA K R+++D+ G+ +IGG Y L+I DDFSR+T F++ KSD FE+FLAD R G P V + R+D GGEF+G FA++CRRH I+Q+FT
Sbjct: 133 TDLNEYHLAHGHAHETLLRITAEQQGVQLTDGPLLPCLGCSMSKGQVKPVQKSTSTRAVKKLFRVYLDLGGKMKTRNIGGIWYTLIIRDDFSRWTRVFFLKHKSDAAVGFEKFLADYRTKGVPCEVYIARTDGGGEFQGQFAEVCRRHGIKQEFT 287
BLAST of mRNA_H-elongata_contig79317.15592.1 vs. uniprot
Match: A0A6H5K2M6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2M6_9PHAE) HSP 1 Score: 163 bits (413), Expect = 8.180e-44 Identity = 76/155 (49.03%), Postives = 105/155 (67.74%), Query Frame = 1
Query: 1 VDINTFHASHGHAPEKLLRSTAQQLGVVLEGTLRECEGCSVAKELDKPIGRTTSTRADKVFGRLFVDICGEKSVASIGGKRYMLVICDDFSRFTWTHFMRQKSDTVALFEQFLADERVAGTPSVVEVVRSDEGGEF-KGDFAKLCRRHNIRQQFT 462
+D+N FH + H+ E LLR+TA++LG+ L G + C GCS++K K I T R+DK GR+FVD+ G K VAS+GGK Y +++ DDF+R TW +F++ KSD + F FLA R G PS+VE+VRSD GGEF G+FA +C I+Q+FT
Sbjct: 570 MDVNEFHNIYAHSHEGLLRTTAKRLGIELTGKMHACTGCSMSKAFKKGIAHETKCRSDKKLGRVFVDLGGRKDVASVGGKHYPMIVKDDFTRRTWMYFLKSKSDAASAFRSFLASVRADGIPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFT 724
BLAST of mRNA_H-elongata_contig79317.15592.1 vs. uniprot
Match: A0A6H5JBA7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBA7_9PHAE) HSP 1 Score: 163 bits (413), Expect = 9.440e-44 Identity = 77/155 (49.68%), Postives = 106/155 (68.39%), Query Frame = 1
Query: 1 VDINTFHASHGHAPEKLLRSTAQQLGVVLEGTLRECEGCSVAKELDKPIGRTTSTRADKVFGRLFVDICGEKSVASIGGKRYMLVICDDFSRFTWTHFMRQKSDTVALFEQFLADERVAGTPSVVEVVRSDEGGEF-KGDFAKLCRRHNIRQQFT 462
+D+N FH + H+ + LLR+TA++LG L G + EC GCS+AK + K I R T +R+DK GR+FVD+ G K VAS+GGK Y +++ DDF+R W +F++ KSD F FLA R G PS+VE+VRSD GGEF G+FA +C I+Q+FT
Sbjct: 664 MDVNEFHNIYAHSHKGLLRTTAKRLGTELVGEMHECTGCSMAKAVKKGIARETKSRSDKKLGRVFVDLGGRKDVASVGGKHYPMIVKDDFTRRAWMYFLKHKSDAGMAFRSFLASVRADGVPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFT 818
BLAST of mRNA_H-elongata_contig79317.15592.1 vs. uniprot
Match: A0A6H5KZH7_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZH7_9PHAE) HSP 1 Score: 163 bits (413), Expect = 9.490e-44 Identity = 77/155 (49.68%), Postives = 106/155 (68.39%), Query Frame = 1
Query: 1 VDINTFHASHGHAPEKLLRSTAQQLGVVLEGTLRECEGCSVAKELDKPIGRTTSTRADKVFGRLFVDICGEKSVASIGGKRYMLVICDDFSRFTWTHFMRQKSDTVALFEQFLADERVAGTPSVVEVVRSDEGGEF-KGDFAKLCRRHNIRQQFT 462
+D+N FH + H+ + LLR+TA++LG L G + EC GCS+AK + K I R T +R+DK GR+FVD+ G K VAS+GGK Y +++ DDF+R W +F++ KSD F FLA R G PS+VE+VRSD GGEF G+FA +C I+Q+FT
Sbjct: 371 MDVNEFHNIYAHSHKGLLRTTAKRLGTELVGEMHECTGCSMAKAVKKGIARETKSRSDKKLGRVFVDLGGRKDVASVGGKHYPMIVKDDFTRRAWMYFLKHKSDAGMAFRSFLASVRADGVPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFT 525
BLAST of mRNA_H-elongata_contig79317.15592.1 vs. uniprot
Match: A0A6H5JH25_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH25_9PHAE) HSP 1 Score: 162 bits (410), Expect = 2.400e-43 Identity = 75/155 (48.39%), Postives = 107/155 (69.03%), Query Frame = 1
Query: 1 VDINTFHASHGHAPEKLLRSTAQQLGVVLEGTLRECEGCSVAKELDKPIGRTTSTRADKVFGRLFVDICGEKSVASIGGKRYMLVICDDFSRFTWTHFMRQKSDTVALFEQFLADERVAGTPSVVEVVRSDEGGEF-KGDFAKLCRRHNIRQQFT 462
+D+N FH +GHA E +LR+TA++LG+ L G + C GCS+ K + K I T+ +DK GR+FV++ G+K VASIGGK Y +++ DDF+R W +F+R KSD + F FLA+ R G PS++E+VRSD GGEF G+FA +C I+Q+FT
Sbjct: 391 MDVNDFHNIYGHAHEGMLRTTAKRLGIELTGKMHACSGCSMGKAIRKAIAHVTTNSSDKKLGRVFVNLGGKKGVASIGGKHYPMILKDDFTRRAWMYFLRSKSDAGSAFRSFLANVRADGIPSLIEIVRSDNGGEFFGGEFASVCNELLIKQEFT 545
BLAST of mRNA_H-elongata_contig79317.15592.1 vs. uniprot
Match: A0A6H5L3Y0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3Y0_9PHAE) HSP 1 Score: 160 bits (406), Expect = 7.290e-43 Identity = 78/155 (50.32%), Postives = 104/155 (67.10%), Query Frame = 1
Query: 1 VDINTFHASHGHAPEKLLRSTAQQLGVVLEGTLRECEGCSVAKELDKPIGRTTSTRADKVFGRLFVDICGEKSVASIGGKRYMLVICDDFSRFTWTHFMRQKSDTVALFEQFLADERVAGTPSVVEVVRSDEGGEF-KGDFAKLCRRHNIRQQFT 462
+DIN FH + H+ E LLR+TA++LG L G + C GCS++K + K I R T R+DK GR+FVD+ G K AS+GGK Y +++ DDF+R TW +F+R KSD + F FLA R G PS VE+VRSD GGEF G+FA +C I+Q+FT
Sbjct: 130 MDINEFHNIYAHSHEGLLRTTAKRLGTKLVGDMHACSGCSMSKAIRKGIVRETKRRSDKKLGRVFVDLGGRKDSASVGGKHYPMIVKDDFTRRTWMYFLRNKSDAGSAFRTFLASVRANGVPSFVEIVRSDNGGEFFGGEFASVCNELLIKQEFT 284
BLAST of mRNA_H-elongata_contig79317.15592.1 vs. uniprot
Match: A0A6H5JV76_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV76_9PHAE) HSP 1 Score: 155 bits (393), Expect = 6.890e-42 Identity = 75/155 (48.39%), Postives = 103/155 (66.45%), Query Frame = 1
Query: 1 VDINTFHASHGHAPEKLLRSTAQQLGVVLEGTLRECEGCSVAKELDKPIGRTTSTRADKVFGRLFVDICGEKSVASIGGKRYMLVICDDFSRFTWTHFMRQKSDTVALFEQFLADERVAGTPSVVEVVRSDEGGEF-KGDFAKLCRRHNIRQQFT 462
+DIN FH + H+ E LLR+TA++LG L G + C GCS++K + K I R T R+DK GR+FVD+ G K +AS+GGK Y +++ DDF+R TW +F++ +SD F FLA R PS VE+VRSD GGEF G+FA +C I+Q+FT
Sbjct: 252 MDINEFHNIYAHSHEGLLRTTAKRLGTKLVGDMHACSGCSMSKAIRKGIVRETKRRSDKKLGRVFVDLGGRKDIASVGGKHYPMIVKDDFTRRTWMYFLKNESDAGGAFRTFLASVRANIVPSFVEIVRSDNGGEFFGGEFASVCNELLIKQEFT 406
BLAST of mRNA_H-elongata_contig79317.15592.1 vs. uniprot
Match: A0A6H5JRL9_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL9_9PHAE) HSP 1 Score: 156 bits (395), Expect = 2.490e-41 Identity = 76/155 (49.03%), Postives = 102/155 (65.81%), Query Frame = 1
Query: 1 VDINTFHASHGHAPEKLLRSTAQQLGVVLEGTLRECEGCSVAKELDKPIGRTTSTRADKVFGRLFVDICGEKSVASIGGKRYMLVICDDFSRFTWTHFMRQKSDTVALFEQFLADERVAGTPSVVEVVRSDEGGEF-KGDFAKLCRRHNIRQQFT 462
+DIN FH + H+ E LLR+TA++LG L G + C GCS++K + K I T R+DK GR+FVD+ G K +AS+GGK Y +++ DDF+R TW F+R KSD + F FLA R G PS VE+VRSD GGEF G+F +C I+Q+FT
Sbjct: 185 MDINEFHNIYAHSHEGLLRTTAKRLGTKLVGDMHACSGCSMSKAIRKGIVGETKRRSDKKLGRVFVDLGGRKDIASVGGKHYPMIVKDDFTRRTWICFLRNKSDAGSAFRTFLASVRANGVPSFVEIVRSDNGGEFFGGEFTSVCNELLIKQEFT 339
BLAST of mRNA_H-elongata_contig79317.15592.1 vs. uniprot
Match: A0A6H5L1A7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1A7_9PHAE) HSP 1 Score: 155 bits (391), Expect = 3.300e-41 Identity = 78/155 (50.32%), Postives = 104/155 (67.10%), Query Frame = 1
Query: 1 VDINTFHASHGHAPEKLLRSTAQQLGVVL-EGTLRECEGCSVAKELDKPIGRTTSTRADKVFGRLFVDICGEKSVASIGGKRYMLVICDDFSRFTWTHFMRQKSDTVALFEQFLADERVAGTPSVVEVVRSDEGGEFKGDFAKLCRRHNIRQQFT 462
D+N +H +HGHA E LLR TA+Q GV L +G L C GCS++K KP+ + TSTRA K R+++D+ G+ SIGG Y L+I DDFSR+T F++ KSD FE+FLAD R G P V R+D GGEF+G FA++CRRH I+++FT
Sbjct: 130 TDLNEYHLAHGHAHETLLRITAEQQGVQLTDGPLLPCLGCSMSKGQVKPVQKGTSTRAVKKLCRVYLDLEGKMKTRSIGGNWYKLIIRDDFSRWTRGFFLKHKSDAAIGFEKFLADYRTKGIPCEVYFARTDGGGEFQGQFAEVCRRHGIKEEFT 284
BLAST of mRNA_H-elongata_contig79317.15592.1 vs. uniprot
Match: A0A6H5JAQ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAQ2_9PHAE) HSP 1 Score: 156 bits (394), Expect = 3.420e-41 Identity = 78/155 (50.32%), Postives = 104/155 (67.10%), Query Frame = 1
Query: 1 VDINTFHASHGHAPEKLLRSTAQQLGVVL-EGTLRECEGCSVAKELDKPIGRTTSTRADKVFGRLFVDICGEKSVASIGGKRYMLVICDDFSRFTWTHFMRQKSDTVALFEQFLADERVAGTPSVVEVVRSDEGGEFKGDFAKLCRRHNIRQQFT 462
D+N +H +HGHA E LLR TA+Q GV L +G L C GCS++K KP+ + TSTRA + F R+++D+ G SIGG Y L+I DDFSR+T F++ KSD FE+FLAD R G P + R+D GGEF+G FA++CRRH I+Q+FT
Sbjct: 639 TDLNEYHLAHGHAHETLLRITAEQQGVQLTDGPLLPCLGCSMSKAQVKPVQKCTSTRAVQNFFRVYLDLEGTMKTRSIGGNWYTLIIRDDFSRWTRVFFLKHKSDAAVGFEKFLADYRTNGVPCEDFIARADGGGEFQGQFAEVCRRHGIKQEFT 793 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig79317.15592.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig79317.15592.1 >prot_H-elongata_contig79317.15592.1 ID=prot_H-elongata_contig79317.15592.1|Name=mRNA_H-elongata_contig79317.15592.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=154bp VDINTFHASHGHAPEKLLRSTAQQLGVVLEGTLRECEGCSVAKELDKPIGback to top mRNA from alignment at H-elongata_contig79317:5..466- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig79317.15592.1 ID=mRNA_H-elongata_contig79317.15592.1|Name=mRNA_H-elongata_contig79317.15592.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=462bp|location=Sequence derived from alignment at H-elongata_contig79317:5..466- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig79317:5..466- >mRNA_H-elongata_contig79317.15592.1 ID=mRNA_H-elongata_contig79317.15592.1|Name=mRNA_H-elongata_contig79317.15592.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=924bp|location=Sequence derived from alignment at H-elongata_contig79317:5..466- (Himanthalia elongata Himel1 dioecious)back to top |