mRNA_H-elongata_contig79317.15592.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig79317.15592.1
Unique NamemRNA_H-elongata_contig79317.15592.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig79317.15592.1 vs. uniprot
Match: A0A6H5JGJ0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGJ0_9PHAE)

HSP 1 Score: 158 bits (400), Expect = 4.040e-45
Identity = 78/155 (50.32%), Postives = 106/155 (68.39%), Query Frame = 1
Query:    1 VDINTFHASHGHAPEKLLRSTAQQLGVVL-EGTLRECEGCSVAKELDKPIGRTTSTRADKVFGRLFVDICGEKSVASIGGKRYMLVICDDFSRFTWTHFMRQKSDTVALFEQFLADERVAGTPSVVEVVRSDEGGEFKGDFAKLCRRHNIRQQFT 462
             D+N +H +HGHA E LLR TA+Q GV L +G L  C GCS++K   KP+ ++TSTRA K   R+++D+ G+    +IGG  Y L+I DDFSR+T   F++ KSD    FE+FLAD R  G P  V + R+D GGEF+G FA++CRRH I+Q+FT
Sbjct:  133 TDLNEYHLAHGHAHETLLRITAEQQGVQLTDGPLLPCLGCSMSKGQVKPVQKSTSTRAVKKLFRVYLDLGGKMKTRNIGGIWYTLIIRDDFSRWTRVFFLKHKSDAAVGFEKFLADYRTKGVPCEVYIARTDGGGEFQGQFAEVCRRHGIKQEFT 287          
BLAST of mRNA_H-elongata_contig79317.15592.1 vs. uniprot
Match: A0A6H5K2M6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2M6_9PHAE)

HSP 1 Score: 163 bits (413), Expect = 8.180e-44
Identity = 76/155 (49.03%), Postives = 105/155 (67.74%), Query Frame = 1
Query:    1 VDINTFHASHGHAPEKLLRSTAQQLGVVLEGTLRECEGCSVAKELDKPIGRTTSTRADKVFGRLFVDICGEKSVASIGGKRYMLVICDDFSRFTWTHFMRQKSDTVALFEQFLADERVAGTPSVVEVVRSDEGGEF-KGDFAKLCRRHNIRQQFT 462
            +D+N FH  + H+ E LLR+TA++LG+ L G +  C GCS++K   K I   T  R+DK  GR+FVD+ G K VAS+GGK Y +++ DDF+R TW +F++ KSD  + F  FLA  R  G PS+VE+VRSD GGEF  G+FA +C    I+Q+FT
Sbjct:  570 MDVNEFHNIYAHSHEGLLRTTAKRLGIELTGKMHACTGCSMSKAFKKGIAHETKCRSDKKLGRVFVDLGGRKDVASVGGKHYPMIVKDDFTRRTWMYFLKSKSDAASAFRSFLASVRADGIPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFT 724          
BLAST of mRNA_H-elongata_contig79317.15592.1 vs. uniprot
Match: A0A6H5JBA7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBA7_9PHAE)

HSP 1 Score: 163 bits (413), Expect = 9.440e-44
Identity = 77/155 (49.68%), Postives = 106/155 (68.39%), Query Frame = 1
Query:    1 VDINTFHASHGHAPEKLLRSTAQQLGVVLEGTLRECEGCSVAKELDKPIGRTTSTRADKVFGRLFVDICGEKSVASIGGKRYMLVICDDFSRFTWTHFMRQKSDTVALFEQFLADERVAGTPSVVEVVRSDEGGEF-KGDFAKLCRRHNIRQQFT 462
            +D+N FH  + H+ + LLR+TA++LG  L G + EC GCS+AK + K I R T +R+DK  GR+FVD+ G K VAS+GGK Y +++ DDF+R  W +F++ KSD    F  FLA  R  G PS+VE+VRSD GGEF  G+FA +C    I+Q+FT
Sbjct:  664 MDVNEFHNIYAHSHKGLLRTTAKRLGTELVGEMHECTGCSMAKAVKKGIARETKSRSDKKLGRVFVDLGGRKDVASVGGKHYPMIVKDDFTRRAWMYFLKHKSDAGMAFRSFLASVRADGVPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFT 818          
BLAST of mRNA_H-elongata_contig79317.15592.1 vs. uniprot
Match: A0A6H5KZH7_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZH7_9PHAE)

HSP 1 Score: 163 bits (413), Expect = 9.490e-44
Identity = 77/155 (49.68%), Postives = 106/155 (68.39%), Query Frame = 1
Query:    1 VDINTFHASHGHAPEKLLRSTAQQLGVVLEGTLRECEGCSVAKELDKPIGRTTSTRADKVFGRLFVDICGEKSVASIGGKRYMLVICDDFSRFTWTHFMRQKSDTVALFEQFLADERVAGTPSVVEVVRSDEGGEF-KGDFAKLCRRHNIRQQFT 462
            +D+N FH  + H+ + LLR+TA++LG  L G + EC GCS+AK + K I R T +R+DK  GR+FVD+ G K VAS+GGK Y +++ DDF+R  W +F++ KSD    F  FLA  R  G PS+VE+VRSD GGEF  G+FA +C    I+Q+FT
Sbjct:  371 MDVNEFHNIYAHSHKGLLRTTAKRLGTELVGEMHECTGCSMAKAVKKGIARETKSRSDKKLGRVFVDLGGRKDVASVGGKHYPMIVKDDFTRRAWMYFLKHKSDAGMAFRSFLASVRADGVPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFT 525          
BLAST of mRNA_H-elongata_contig79317.15592.1 vs. uniprot
Match: A0A6H5JH25_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH25_9PHAE)

HSP 1 Score: 162 bits (410), Expect = 2.400e-43
Identity = 75/155 (48.39%), Postives = 107/155 (69.03%), Query Frame = 1
Query:    1 VDINTFHASHGHAPEKLLRSTAQQLGVVLEGTLRECEGCSVAKELDKPIGRTTSTRADKVFGRLFVDICGEKSVASIGGKRYMLVICDDFSRFTWTHFMRQKSDTVALFEQFLADERVAGTPSVVEVVRSDEGGEF-KGDFAKLCRRHNIRQQFT 462
            +D+N FH  +GHA E +LR+TA++LG+ L G +  C GCS+ K + K I   T+  +DK  GR+FV++ G+K VASIGGK Y +++ DDF+R  W +F+R KSD  + F  FLA+ R  G PS++E+VRSD GGEF  G+FA +C    I+Q+FT
Sbjct:  391 MDVNDFHNIYGHAHEGMLRTTAKRLGIELTGKMHACSGCSMGKAIRKAIAHVTTNSSDKKLGRVFVNLGGKKGVASIGGKHYPMILKDDFTRRAWMYFLRSKSDAGSAFRSFLANVRADGIPSLIEIVRSDNGGEFFGGEFASVCNELLIKQEFT 545          
BLAST of mRNA_H-elongata_contig79317.15592.1 vs. uniprot
Match: A0A6H5L3Y0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3Y0_9PHAE)

HSP 1 Score: 160 bits (406), Expect = 7.290e-43
Identity = 78/155 (50.32%), Postives = 104/155 (67.10%), Query Frame = 1
Query:    1 VDINTFHASHGHAPEKLLRSTAQQLGVVLEGTLRECEGCSVAKELDKPIGRTTSTRADKVFGRLFVDICGEKSVASIGGKRYMLVICDDFSRFTWTHFMRQKSDTVALFEQFLADERVAGTPSVVEVVRSDEGGEF-KGDFAKLCRRHNIRQQFT 462
            +DIN FH  + H+ E LLR+TA++LG  L G +  C GCS++K + K I R T  R+DK  GR+FVD+ G K  AS+GGK Y +++ DDF+R TW +F+R KSD  + F  FLA  R  G PS VE+VRSD GGEF  G+FA +C    I+Q+FT
Sbjct:  130 MDINEFHNIYAHSHEGLLRTTAKRLGTKLVGDMHACSGCSMSKAIRKGIVRETKRRSDKKLGRVFVDLGGRKDSASVGGKHYPMIVKDDFTRRTWMYFLRNKSDAGSAFRTFLASVRANGVPSFVEIVRSDNGGEFFGGEFASVCNELLIKQEFT 284          
BLAST of mRNA_H-elongata_contig79317.15592.1 vs. uniprot
Match: A0A6H5JV76_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV76_9PHAE)

HSP 1 Score: 155 bits (393), Expect = 6.890e-42
Identity = 75/155 (48.39%), Postives = 103/155 (66.45%), Query Frame = 1
Query:    1 VDINTFHASHGHAPEKLLRSTAQQLGVVLEGTLRECEGCSVAKELDKPIGRTTSTRADKVFGRLFVDICGEKSVASIGGKRYMLVICDDFSRFTWTHFMRQKSDTVALFEQFLADERVAGTPSVVEVVRSDEGGEF-KGDFAKLCRRHNIRQQFT 462
            +DIN FH  + H+ E LLR+TA++LG  L G +  C GCS++K + K I R T  R+DK  GR+FVD+ G K +AS+GGK Y +++ DDF+R TW +F++ +SD    F  FLA  R    PS VE+VRSD GGEF  G+FA +C    I+Q+FT
Sbjct:  252 MDINEFHNIYAHSHEGLLRTTAKRLGTKLVGDMHACSGCSMSKAIRKGIVRETKRRSDKKLGRVFVDLGGRKDIASVGGKHYPMIVKDDFTRRTWMYFLKNESDAGGAFRTFLASVRANIVPSFVEIVRSDNGGEFFGGEFASVCNELLIKQEFT 406          
BLAST of mRNA_H-elongata_contig79317.15592.1 vs. uniprot
Match: A0A6H5JRL9_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL9_9PHAE)

HSP 1 Score: 156 bits (395), Expect = 2.490e-41
Identity = 76/155 (49.03%), Postives = 102/155 (65.81%), Query Frame = 1
Query:    1 VDINTFHASHGHAPEKLLRSTAQQLGVVLEGTLRECEGCSVAKELDKPIGRTTSTRADKVFGRLFVDICGEKSVASIGGKRYMLVICDDFSRFTWTHFMRQKSDTVALFEQFLADERVAGTPSVVEVVRSDEGGEF-KGDFAKLCRRHNIRQQFT 462
            +DIN FH  + H+ E LLR+TA++LG  L G +  C GCS++K + K I   T  R+DK  GR+FVD+ G K +AS+GGK Y +++ DDF+R TW  F+R KSD  + F  FLA  R  G PS VE+VRSD GGEF  G+F  +C    I+Q+FT
Sbjct:  185 MDINEFHNIYAHSHEGLLRTTAKRLGTKLVGDMHACSGCSMSKAIRKGIVGETKRRSDKKLGRVFVDLGGRKDIASVGGKHYPMIVKDDFTRRTWICFLRNKSDAGSAFRTFLASVRANGVPSFVEIVRSDNGGEFFGGEFTSVCNELLIKQEFT 339          
BLAST of mRNA_H-elongata_contig79317.15592.1 vs. uniprot
Match: A0A6H5L1A7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1A7_9PHAE)

HSP 1 Score: 155 bits (391), Expect = 3.300e-41
Identity = 78/155 (50.32%), Postives = 104/155 (67.10%), Query Frame = 1
Query:    1 VDINTFHASHGHAPEKLLRSTAQQLGVVL-EGTLRECEGCSVAKELDKPIGRTTSTRADKVFGRLFVDICGEKSVASIGGKRYMLVICDDFSRFTWTHFMRQKSDTVALFEQFLADERVAGTPSVVEVVRSDEGGEFKGDFAKLCRRHNIRQQFT 462
             D+N +H +HGHA E LLR TA+Q GV L +G L  C GCS++K   KP+ + TSTRA K   R+++D+ G+    SIGG  Y L+I DDFSR+T   F++ KSD    FE+FLAD R  G P  V   R+D GGEF+G FA++CRRH I+++FT
Sbjct:  130 TDLNEYHLAHGHAHETLLRITAEQQGVQLTDGPLLPCLGCSMSKGQVKPVQKGTSTRAVKKLCRVYLDLEGKMKTRSIGGNWYKLIIRDDFSRWTRGFFLKHKSDAAIGFEKFLADYRTKGIPCEVYFARTDGGGEFQGQFAEVCRRHGIKEEFT 284          
BLAST of mRNA_H-elongata_contig79317.15592.1 vs. uniprot
Match: A0A6H5JAQ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAQ2_9PHAE)

HSP 1 Score: 156 bits (394), Expect = 3.420e-41
Identity = 78/155 (50.32%), Postives = 104/155 (67.10%), Query Frame = 1
Query:    1 VDINTFHASHGHAPEKLLRSTAQQLGVVL-EGTLRECEGCSVAKELDKPIGRTTSTRADKVFGRLFVDICGEKSVASIGGKRYMLVICDDFSRFTWTHFMRQKSDTVALFEQFLADERVAGTPSVVEVVRSDEGGEFKGDFAKLCRRHNIRQQFT 462
             D+N +H +HGHA E LLR TA+Q GV L +G L  C GCS++K   KP+ + TSTRA + F R+++D+ G     SIGG  Y L+I DDFSR+T   F++ KSD    FE+FLAD R  G P    + R+D GGEF+G FA++CRRH I+Q+FT
Sbjct:  639 TDLNEYHLAHGHAHETLLRITAEQQGVQLTDGPLLPCLGCSMSKAQVKPVQKCTSTRAVQNFFRVYLDLEGTMKTRSIGGNWYTLIIRDDFSRWTRVFFLKHKSDAAVGFEKFLADYRTNGVPCEDFIARADGGGEFQGQFAEVCRRHGIKQEFT 793          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig79317.15592.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JGJ0_9PHAE4.040e-4550.32Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K2M6_9PHAE8.180e-4449.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JBA7_9PHAE9.440e-4449.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZH7_9PHAE9.490e-4449.68Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JH25_9PHAE2.400e-4348.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L3Y0_9PHAE7.290e-4350.32Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JV76_9PHAE6.890e-4248.39Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5JRL9_9PHAE2.490e-4149.03Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5L1A7_9PHAE3.300e-4150.32Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JAQ2_9PHAE3.420e-4150.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig79317contigH-elongata_contig79317:5..466 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score86.3
Seed ortholog evalue1.4e-14
Seed eggNOG ortholog4530.OS08T0125300-01
EggNOG free text desc.gag-polypeptide of LTR copia-type
EggNOG OGs37THH@33090,3GG2K@35493,3IIIB@38820,3M5VU@4447,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPoales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size462
Cds size462
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931198.2974458-CDS-H-elongata_contig79317:4..4661622931198.2974458-CDS-H-elongata_contig79317:4..466Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79317 5..466 -
1691679737.9271145-CDS-H-elongata_contig79317:4..4661691679737.9271145-CDS-H-elongata_contig79317:4..466Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79317 5..466 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig79317.15592.1prot_H-elongata_contig79317.15592.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig79317 5..466 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig79317.15592.1

>prot_H-elongata_contig79317.15592.1 ID=prot_H-elongata_contig79317.15592.1|Name=mRNA_H-elongata_contig79317.15592.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=154bp
VDINTFHASHGHAPEKLLRSTAQQLGVVLEGTLRECEGCSVAKELDKPIG
RTTSTRADKVFGRLFVDICGEKSVASIGGKRYMLVICDDFSRFTWTHFMR
QKSDTVALFEQFLADERVAGTPSVVEVVRSDEGGEFKGDFAKLCRRHNIR
QQFT
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mRNA from alignment at H-elongata_contig79317:5..466-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig79317.15592.1 ID=mRNA_H-elongata_contig79317.15592.1|Name=mRNA_H-elongata_contig79317.15592.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=462bp|location=Sequence derived from alignment at H-elongata_contig79317:5..466- (Himanthalia elongata Himel1 dioecious)
GTGGATATCAATACTTTTCACGCGTCCCACGGGCATGCGCCCGAGAAATT ACTCCGTTCCACAGCCCAACAGCTCGGGGTAGTTCTTGAGGGAACCCTGA GGGAGTGCGAGGGGTGCTCAGTTGCTAAAGAACTTGACAAGCCGATCGGC AGGACAACTTCGACAAGGGCCGATAAGGTATTTGGTCGTTTGTTCGTAGA CATTTGTGGAGAAAAGTCTGTTGCGTCAATCGGAGGGAAGCGATACATGC TGGTAATCTGTGATGACTTCTCGCGTTTCACGTGGACACACTTCATGCGT CAAAAATCCGATACAGTTGCTCTTTTTGAGCAATTTTTGGCAGACGAACG CGTGGCAGGAACCCCCTCAGTAGTAGAAGTGGTACGTTCTGATGAAGGGG GAGAATTCAAAGGGGATTTTGCAAAACTCTGTAGGAGGCACAACATCCGT CAGCAGTTCACT
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Coding sequence (CDS) from alignment at H-elongata_contig79317:5..466-

>mRNA_H-elongata_contig79317.15592.1 ID=mRNA_H-elongata_contig79317.15592.1|Name=mRNA_H-elongata_contig79317.15592.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=924bp|location=Sequence derived from alignment at H-elongata_contig79317:5..466- (Himanthalia elongata Himel1 dioecious)
GTGGATATCAATACTTTTCACGCGTCCCACGGGCATGCGCCCGAGAAATT
ACTCCGTTCCACAGCCCAACAGCTCGGGGTAGTTCTTGAGGGAACCCTGA
GGGAGTGCGAGGGGTGCTCAGTTGCTAAAGAACTTGACAAGCCGATCGGC
AGGACAACTTCGACAAGGGCCGATAAGGTATTTGGTCGTTTGTTCGTAGA
CATTTGTGGAGAAAAGTCTGTTGCGTCAATCGGAGGGAAGCGATACATGC
TGGTAATCTGTGATGACTTCTCGCGTTTCACGTGGACACACTTCATGCGT
CAAAAATCCGATACAGTTGCTCTTTTTGAGCAATTTTTGGCAGACGAACG
CGTGGCAGGAACCCCCTCAGTAGTAGAAGTGGTACGTTCTGATGAAGGGG
GAGAATTCAAAGGGGATTTTGCAAAACTCTGTAGGAGGCACAACATCCGT
CAGCAGTTCACTGTGGATATCAATACTTTTCACGCGTCCCACGGGCATGC
GCCCGAGAAATTACTCCGTTCCACAGCCCAACAGCTCGGGGTAGTTCTTG
AGGGAACCCTGAGGGAGTGCGAGGGGTGCTCAGTTGCTAAAGAACTTGAC
AAGCCGATCGGCAGGACAACTTCGACAAGGGCCGATAAGGTATTTGGTCG
TTTGTTCGTAGACATTTGTGGAGAAAAGTCTGTTGCGTCAATCGGAGGGA
AGCGATACATGCTGGTAATCTGTGATGACTTCTCGCGTTTCACGTGGACA
CACTTCATGCGTCAAAAATCCGATACAGTTGCTCTTTTTGAGCAATTTTT
GGCAGACGAACGCGTGGCAGGAACCCCCTCAGTAGTAGAAGTGGTACGTT
CTGATGAAGGGGGAGAATTCAAAGGGGATTTTGCAAAACTCTGTAGGAGG
CACAACATCCGTCAGCAGTTCACT
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