mRNA_H-elongata_contig79216.15583.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig79216.15583.1 vs. uniprot
Match: A0A6H5JYD3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYD3_9PHAE) HSP 1 Score: 194 bits (492), Expect = 4.340e-54 Identity = 104/211 (49.29%), Postives = 139/211 (65.88%), Query Frame = 1
Query: 1 MHALVVPGLGCNIFSPKANLRNGVKHVLEAGNPHLSVGDVVIPLVQDPQDQGLCSLNIGFQSD---------------PHDKMCSKCDNVLQDDATPGVAYVAETSPDIWDRRLGHMNIRNMNLLRRKEGIGVNYTGTVSNCDICAVTKSRQQAHPKTITRKTTKPMELVYMNLMGPTTPATKGGYKYVSQFTDDVSRMKEIFLLRSKMET 588
+ LVVPGLG N+FS A ++NGVK V+E GNPHL+VG +PL QDP D G+CS++I FQ+ P D+ K D V+ DD GVA A + + W R L H+N R+M LLR+KE GV+++ +++ CDICA++KSRQ AHP+ R+TT PM+LVY + MG TTP KGG+ YVS+FTD S MKEI+LL++ ET
Sbjct: 203 LRGLVVPGLGRNVFSRAAQIKNGVKLVIEEGNPHLAVGGHTLPLKQDPLDMGMCSVDIEFQAASEQTTASTKPTSHALPDDRAIGKPDTVMLDDDL-GVACAATVNANTWHRWLRHLNFRSMELLRKKEDNGVDFSDSMTPCDICAISKSRQLAHPEKTNRETTAPMQLVYTDNMGKTTPLAKGGFGYVSKFTDAYSWMKEIYLLKAISET 412
BLAST of mRNA_H-elongata_contig79216.15583.1 vs. uniprot
Match: A0A6H5JY69_9PHAE (Peptidase A2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY69_9PHAE) HSP 1 Score: 157 bits (398), Expect = 4.630e-44 Identity = 90/216 (41.67%), Postives = 124/216 (57.41%), Query Frame = 1
Query: 1 MHALVVPGLGCNIFSPKANLRNGVKHVLEAGNPHLSVGDVVIPLVQDPQDQGLCSLNIGFQSDPHDKMCSKCDN-------------VLQDDATPGV--AYVAETSPDIWDRRLGHMNIRNMNLLRRKEGIGVNYTGTVSNCDICAVTKSRQQAHPKTITRKTTKPMELVYMNLMGPTTPATKGG---YKYVSQFTDDVSRMKEIFLLRSKMETAE 594
+ L+VPGLG NIF+P A L+ G++ VLE PHL++G VV+PL Q+ QDQG+C+L I F+ DP + +N +Q D TP + S D+W RRLGH+N R M +LRR GV Y G VS CD C +TK ++ PK +R TKP +LV + MGP P K Y YV++ D +RM+E++LLR + ET +
Sbjct: 86 LQGLIVPGLGRNIFAPTALLKKGLRSVLEDKTPHLTIGGVVVPLKQETQDQGMCTLAITFKGDPASTSKTPPNNQEPGRKPKFGKPEAVQIDRTPRATCSVAMSVSADLWHRRLGHINPRAMEILRRNPATGVKYDGPVSPCDNCHITKHKKAPVPKKTSRVLTKPGQLVQFDNMGPIDPPAKYNGRTYSYVAKAIDIFTRMREVYLLRHRTETTQ 301
BLAST of mRNA_H-elongata_contig79216.15583.1 vs. uniprot
Match: A0A6H5K9M6_9PHAE (gag_pre-integrs domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9M6_9PHAE) HSP 1 Score: 156 bits (394), Expect = 1.100e-42 Identity = 82/211 (38.86%), Postives = 122/211 (57.82%), Query Frame = 1
Query: 1 MHALVVPGLGCNIFSPKANLRNGVKHVLEAGNPHLSVGDVVIPLVQDPQDQGLCSLNIGFQSD----------PHDKMCSKCDNVLQDDATPGVAYVAETSPDIWDRRLGHMNIRNMNLLRRKEGIGVNYTGTVSNCDICAVTKSRQQAHPKTITRKTTKPMELVYMNLMGPTTPATK---GGYKYVSQFTDDVSRMKEIFLLRSKMETAE 594
+ L+VPGLG NIFSP + L+ G++ V+E PHL + VIPL QDP+DQG+C+L+I F+ + PH K T S D W RRLGH+N R++++L + G V+Y ++S C +C + K +Q +PK TR+ ++P +LV ++ MGP TP K G + Y + TDD ++MKE++LLR K +T E
Sbjct: 56 IQGLIVPGLGRNIFSPTSLLKKGLRCVVEESTPHLPIQGKVIPLTQDPRDQGMCTLDITFEQNVQPSGTKSLVPHQKQSQT--------HTANAVCFTLVSADTWHRRLGHLNARSLDILTKDTGTRVDYRDSLSPCGVCQIAKHKQSPYPKQSTRELSRPGQLVVIDNMGPVTPPAKYKGGSFAYACKITDDCTKMKEVYLLRKKSDTTE 258
BLAST of mRNA_H-elongata_contig79216.15583.1 vs. uniprot
Match: A0A6H5K6T1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6T1_9PHAE) HSP 1 Score: 157 bits (396), Expect = 4.070e-42 Identity = 91/217 (41.94%), Postives = 127/217 (58.53%), Query Frame = 1
Query: 1 MHALVVPGLGCNIFSPKANLRNGVKHVLEAGNPHLSVG-DVVIPLVQDPQDQGLCSLNIGFQSDPHDKMCSKCDN-------------VLQDDATPGV--AYVAETSPDIWDRRLGHMNIRNMNLLRRKEGIGVNYTGTVSNCDICAVTKSRQQAHPKTITRKTTKPMELVYMNLMGPTTPATKGG---YKYVSQFTDDVSRMKEIFLLRSKMETAE 594
+ L+VPGLG NIF+P A L+ G++ VLE PHL++G +VV+PL Q+ QDQG+C+L I F+ DP + +N +Q D TP + S D+W RRLGH+N R M +LRR GV Y G VS CD C +TK ++ PK +R TKP +LV + MGP P K Y YV++ TD ++RM+E++LLR + ET +
Sbjct: 134 LQGLIVPGLGRNIFAPTALLKKGLRCVLEDKTPHLTIGGEVVVPLKQETQDQGMCTLAITFKGDPASTSKTPPNNQEPGRKPKFGKPEAVQIDHTPHATCSVAMSVSADLWHRRLGHINPRAMEILRRNPATGVKYDGPVSPCDNCQITKHKKAPVPKKTSRVLTKPGQLVQFDNMGPIDPPAKYNGRTYSYVAKATDVITRMREMYLLRDRTETTQ 350
BLAST of mRNA_H-elongata_contig79216.15583.1 vs. uniprot
Match: A0A6H5KMG5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMG5_9PHAE) HSP 1 Score: 159 bits (402), Expect = 8.520e-42 Identity = 83/211 (39.34%), Postives = 122/211 (57.82%), Query Frame = 1
Query: 1 MHALVVPGLGCNIFSPKANLRNGVKHVLEAGNPHLSVGDVVIPLVQDPQDQGLCSLNIGFQSD----------PHDKMCSKCDNVLQDDATPGVAYVAETSPDIWDRRLGHMNIRNMNLLRRKEGIGVNYTGTVSNCDICAVTKSRQQAHPKTITRKTTKPMELVYMNLMGPTTPATK---GGYKYVSQFTDDVSRMKEIFLLRSKMETAE 594
+ +VPGLG NIFSP + L+ G++ V+E PHL+ VIPL QDP+DQG+C+L+I F+ + PH K T S D W RRLGH+N R++++LR+ G GV+Y ++S C +C + K +Q HPK TR+ ++P +LV + MGP P K G + YV + TDD ++MK+++LLR K +T E
Sbjct: 238 IQGFIVPGLGRNIFSPTSLLKKGLRCVVEESTPHLTFQGKVIPLTQDPRDQGMCTLDITFEQNVQPSGTKSLVPHQKQSQT--------HTANAVCFTLVSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIGNMGPVNPPAKYKGGSFPYVRKITDDYTKMKKVYLLRKKSDTTE 440
BLAST of mRNA_H-elongata_contig79216.15583.1 vs. uniprot
Match: A0A6H5KVF6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVF6_9PHAE) HSP 1 Score: 157 bits (397), Expect = 1.940e-41 Identity = 83/211 (39.34%), Postives = 122/211 (57.82%), Query Frame = 1
Query: 1 MHALVVPGLGCNIFSPKANLRNGVKHVLEAGNPHLSVGDVVIPLVQDPQDQGLCSLNIGFQSD----------PHDKMCSKCDNVLQDDATPGVAYVAETSPDIWDRRLGHMNIRNMNLLRRKEGIGVNYTGTVSNCDICAVTKSRQQAHPKTITRKTTKPMELVYMNLMGPTTPATK---GGYKYVSQFTDDVSRMKEIFLLRSKMETAE 594
+ L+VPGLG NIFSP + L+ G++ V E PHL++ VIPL QDP+DQG+C+L+I F+ + PH K T S D W RRLGH+N R++++LR+ G V+Y ++S C +C + K +Q HPK TR+ ++P +LV ++ MGP P K G + Y + TDD ++MKE++LLR K +T E
Sbjct: 273 IQGLIVPGLGRNIFSPTSLLKRGLRCVGEKSTPHLTIQGKVIPLTQDPRDQGMCTLDITFEQNVQPSGTKSLVPHQKQSQT--------HTANAVCFTLVSADTWHRRLGHLNARSLDILRKDTGTEVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKVTDDYTKMKEVYLLRKKSDTTE 475
BLAST of mRNA_H-elongata_contig79216.15583.1 vs. uniprot
Match: A0A6H5KT84_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT84_9PHAE) HSP 1 Score: 157 bits (396), Expect = 4.070e-41 Identity = 85/222 (38.29%), Postives = 125/222 (56.31%), Query Frame = 1
Query: 1 MHALVVPGLGCNIFS-----------PKANLRNGVKHVLEAGNPHLSVGDVVIPLVQDPQDQGLCSLNIGFQSD----------PHDKMCSKCDNVLQDDATPGVAYVAETSPDIWDRRLGHMNIRNMNLLRRKEGIGVNYTGTVSNCDICAVTKSRQQAHPKTITRKTTKPMELVYMNLMGPTTPATK---GGYKYVSQFTDDVSRMKEIFLLRSKMETAE 594
+ L+VPGLG NIFS P + L+ G++ V+E PHL++ D VIPL QDP+DQG+C+L+I F+ + PH K T S D W RRLGH+N R++++LR+ G GV+Y ++S C +C + K +Q HPK TR+ ++P +LV ++ MGP P K G + Y + TDD ++MKE++LLR K +T E
Sbjct: 314 IQGLIVPGLGRNIFSSRTLLLGMDFSPTSLLKKGLRCVVEESTPHLTIQDKVIPLTQDPRDQGMCTLDITFEQNVQPSGTKSLVPHQKQSQT--------HTANAVCFTLVSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTREISRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTE 527
BLAST of mRNA_H-elongata_contig79216.15583.1 vs. uniprot
Match: A0A6H5KJB9_9PHAE (Uncharacterized protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJB9_9PHAE) HSP 1 Score: 156 bits (394), Expect = 9.900e-41 Identity = 91/217 (41.94%), Postives = 126/217 (58.06%), Query Frame = 1
Query: 1 MHALVVPGLGCNIFSPKANLRNGVKHVLEAGNPHLSVG-DVVIPLVQDPQDQGLCSLNIGFQSDPHDKMCSKCDN-------------VLQDDATPGV--AYVAETSPDIWDRRLGHMNIRNMNLLRRKEGIGVNYTGTVSNCDICAVTKSRQQAHPKTITRKTTKPMELVYMNLMGPTTPATKGG---YKYVSQFTDDVSRMKEIFLLRSKMETAE 594
+ L+VPGLG NIF+P A L+ G++ VLE PHL++G +VV+PL Q+ QDQG+C+L I F+ DP + +N +Q D TP + S D+W RRLGH+N R M +LRR GV Y G VS CD C +TK ++ PK +R TKP +LV + MGP P K Y YV++ TD +RM+E++LLR + ET +
Sbjct: 442 LQGLIVPGLGRNIFAPTALLKKGLRCVLEDKTPHLTIGGEVVVPLKQETQDQGMCTLAITFKGDPASTSKTPPNNQEPGRKPKFRKQEAVQIDHTPHATCSVAMSVSADLWHRRLGHINPRAMEILRRNPATGVKYDGPVSPCDNCQITKHKKAPVPKKTSRVLTKPGQLVQFDNMGPIDPPAKYNGRTYSYVAKATDVFTRMREVYLLRDRTETTQ 658
BLAST of mRNA_H-elongata_contig79216.15583.1 vs. uniprot
Match: A0A6H5K3T5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3T5_9PHAE) HSP 1 Score: 156 bits (395), Expect = 1.230e-40 Identity = 91/217 (41.94%), Postives = 126/217 (58.06%), Query Frame = 1
Query: 1 MHALVVPGLGCNIFSPKANLRNGVKHVLEAGNPHLSVG-DVVIPLVQDPQDQGLCSLNIGFQSDPHDKMCSKCDN-------------VLQDDATPGV--AYVAETSPDIWDRRLGHMNIRNMNLLRRKEGIGVNYTGTVSNCDICAVTKSRQQAHPKTITRKTTKPMELVYMNLMGPTTPATKGG---YKYVSQFTDDVSRMKEIFLLRSKMETAE 594
+ L+VPGLG NIF+P A L+ G++ VLE PHL++G +VV+PL Q+ QDQG+C+L I F+ DP + +N +Q D TP + S D+W RRLGH+N R M +LRR GV Y G VS CD C +TK ++ PK +R TKP +LV + MGP P K Y YV++ TD +RM+E++LLR + ET +
Sbjct: 442 LQGLIVPGLGRNIFAPTALLKKGLRCVLEDKTPHLTIGGEVVVPLKQETQDQGMCTLAITFKGDPASTSKTPPNNQEPGRKPKFRKPEAVQIDHTPHATCSVAMSVSADLWHRRLGHINPRAMEILRRNPATGVKYDGPVSPCDNCQITKHKKAPVPKNTSRVLTKPGQLVQFDNMGPIDPPAKYNGRTYSYVAKATDVFTRMREVYLLRDRTETTQ 658
BLAST of mRNA_H-elongata_contig79216.15583.1 vs. uniprot
Match: A0A6H5JUN9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUN9_9PHAE) HSP 1 Score: 156 bits (394), Expect = 1.660e-40 Identity = 91/217 (41.94%), Postives = 126/217 (58.06%), Query Frame = 1
Query: 1 MHALVVPGLGCNIFSPKANLRNGVKHVLEAGNPHLSVG-DVVIPLVQDPQDQGLCSLNIGFQSDPHDKMCSKCDN-------------VLQDDATPGV--AYVAETSPDIWDRRLGHMNIRNMNLLRRKEGIGVNYTGTVSNCDICAVTKSRQQAHPKTITRKTTKPMELVYMNLMGPTTPATKGG---YKYVSQFTDDVSRMKEIFLLRSKMETAE 594
+ L+VPGLG NIF+P A L+ G++ VLE PHL++G +VV+PL Q+ QDQG+C+L I F+ DP + +N +Q D TP + S D+W RRLGH+N R M +LRR GV Y G VS CD C +TK ++ PK +R TKP +LV + MGP P K Y YV++ TD +RM+E++LLR + ET +
Sbjct: 461 LQGLIVPGLGRNIFAPTALLKKGLRCVLEDKTPHLTIGGEVVVPLKQETQDQGMCTLAITFKGDPASTSKTPPNNQEPGRKPKFGKPEAVQIDHTPHATCSVAMSVSADLWHRRLGHINPRAMEILRRNPATGVKYDGPVSPCDNCQITKHKKAPVPKKTSRVLTKPGQLVQFDNMGPIDPPAKYNGRTYSYVAKATDVFTRMREVYLLRDRTETTQ 677 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig79216.15583.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig79216.15583.1 >prot_H-elongata_contig79216.15583.1 ID=prot_H-elongata_contig79216.15583.1|Name=mRNA_H-elongata_contig79216.15583.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=198bp MHALVVPGLGCNIFSPKANLRNGVKHVLEAGNPHLSVGDVVIPLVQDPQDback to top mRNA from alignment at H-elongata_contig79216:2194..2787- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig79216.15583.1 ID=mRNA_H-elongata_contig79216.15583.1|Name=mRNA_H-elongata_contig79216.15583.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=594bp|location=Sequence derived from alignment at H-elongata_contig79216:2194..2787- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig79216:2194..2787- >mRNA_H-elongata_contig79216.15583.1 ID=mRNA_H-elongata_contig79216.15583.1|Name=mRNA_H-elongata_contig79216.15583.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1188bp|location=Sequence derived from alignment at H-elongata_contig79216:2194..2787- (Himanthalia elongata Himel1 dioecious)back to top |