mRNA_H-elongata_contig79196.15581.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig79196.15581.1
Unique NamemRNA_H-elongata_contig79196.15581.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig79196.15581.1 vs. uniprot
Match: D7FZI2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZI2_ECTSI)

HSP 1 Score: 469 bits (1207), Expect = 2.230e-154
Identity = 227/353 (64.31%), Postives = 272/353 (77.05%), Query Frame = 1
Query:    4 QDQLRWNTRMGSSKGLRFHPATLRIAIYMHGVAGSAGYNMLRNFIHLPSPRRVQ*LQAQAAPPRTGVLVDNIKKYGRLAAEQDADKADLTGVLSWDLMHLSKNGFDFAPKERGLTGLVDEATFFNPVYQGKVDEDGDLDKQLDKILATQYVEMFFVSLGNPEYKFVVWREAVRSLSTDYIQRMLTRTMRFLAMAHPDKGFDVIATVCDGASEHRSFHTRASTEAFRAWSKGASETPFDEFKMGFLHPHHLHVVFNMSDPMHILKKIVNALWHSDIPEKQRSLGMWLPNNEGELEFSLFSLKTGERVFDEIGNEGGRVPLNELAGSVRVFRNHLAAMWNRTSHSCMNVSHSAKV 1062
            +DQ++WNT  G +KG RFHPAT+R+AIY+ G+AG+A YNMLRN +HLPSP R++ L+  AAPPRTGVL +NI KYG+LAA QDADK DL GVL+WDLMHL+KNGF FAP   G TGLVDE TFFNP+Y+ +     +++  L+KI+ATQYVEMFFVS+G PEYKFVVWREAVRSLSTDYIQRML R MR+LAMAHPDK FDVIAT CDGA EHRSF T A+   F  W KG  E  F  FK+GFLHP HLH VFNMSDPMHILKKIVNALWHSDIP KQR LGMW   ++ EL+FS FSLKT +RV++++  +   +   E A ++ +F       +NRT+ +CMNV  SAKV
Sbjct:  445 EDQVKWNTSHGKAKGFRFHPATMRLAIYIQGIAGTAAYNMLRNVLHLPSPERIKQLRRNAAPPRTGVLTENILKYGKLAATQDADKVDLMGVLTWDLMHLNKNGFSFAPNGGGFTGLVDETTFFNPIYKHEGGVVKEVEPILEKIVATQYVEMFFVSIGKPEYKFVVWREAVRSLSTDYIQRMLIRAMRYLAMAHPDKAFDVIATECDGAPEHRSFQTHAAILGFCHWIKGPKEGSFAGFKVGFLHPVHLHEVFNMSDPMHILKKIVNALWHSDIPAKQRQLGMWCVTDQDELKFSQFSLKTAQRVYNDVEYDNDSMTPEERAATLTIFPGMPVGAFNRTNFTCMNVKLSAKV 797          
BLAST of mRNA_H-elongata_contig79196.15581.1 vs. uniprot
Match: A0A6H5KVF4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVF4_9PHAE)

HSP 1 Score: 464 bits (1194), Expect = 2.950e-153
Identity = 223/353 (63.17%), Postives = 270/353 (76.49%), Query Frame = 1
Query:    4 QDQLRWNTRMGSSKGLRFHPATLRIAIYMHGVAGSAGYNMLRNFIHLPSPRRVQ*LQAQAAPPRTGVLVDNIKKYGRLAAEQDADKADLTGVLSWDLMHLSKNGFDFAPKERGLTGLVDEATFFNPVYQGKVDEDGDLDKQLDKILATQYVEMFFVSLGNPEYKFVVWREAVRSLSTDYIQRMLTRTMRFLAMAHPDKGFDVIATVCDGASEHRSFHTRASTEAFRAWSKGASETPFDEFKMGFLHPHHLHVVFNMSDPMHILKKIVNALWHSDIPEKQRSLGMWLPNNEGELEFSLFSLKTGERVFDEIGNEGGRVPLNELAGSVRVFRNHLAAMWNRTSHSCMNVSHSAKV 1062
            +DQ++WNT  G +KG RFHPAT+R+AIY+ G+AG+A YNMLRN +HLPSP R++ L+  AAPPRT VL +NI KYG+LAA QDADK DL GVL+WDLMHL+KNGF FAP   G TGLVDE  FFNP+Y+ +     +++  L+KI+ATQYVEMFFVS+G PEYKFVVWREAVRSLSTDYIQRML R MR+LAMAHPDK FDV+AT+CDGA EHRSF T A+   F  W KG  E  F  FK+GFLHP HLH VFNMSDPMHILKKIVNALWHSDIP KQR LGMW   ++ EL+FS FSLKT +RV++++  +   +   E   ++ +F       +NRT+ +CMNV  SAKV
Sbjct:  536 EDQVKWNTSHGKAKGFRFHPATMRLAIYIQGIAGTAAYNMLRNVLHLPSPERIKQLRRNAAPPRTCVLTENILKYGKLAATQDADKVDLMGVLTWDLMHLNKNGFSFAPNGGGFTGLVDETAFFNPIYKHEGGVVKEVEPTLEKIVATQYVEMFFVSIGKPEYKFVVWREAVRSLSTDYIQRMLIRVMRYLAMAHPDKAFDVVATICDGAPEHRSFQTHAAILGFCHWIKGPKEGSFAGFKVGFLHPVHLHEVFNMSDPMHILKKIVNALWHSDIPAKQRQLGMWCVTDQDELKFSQFSLKTAQRVYNDVEYDNDSMTPEERPATLTIFPGMPVGAFNRTNFTCMNVKLSAKV 888          
BLAST of mRNA_H-elongata_contig79196.15581.1 vs. uniprot
Match: A0A6H5L5M0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5M0_9PHAE)

HSP 1 Score: 439 bits (1129), Expect = 6.430e-146
Identity = 222/393 (56.49%), Postives = 269/393 (68.45%), Query Frame = 1
Query:    4 QDQLRWNTRMGSSKGLRFHPATLRIAIYMHGVAGSAGYNMLRNFIHLPSPRRVQ*LQAQAAPPRTGVLVDNIKKYGRLAAEQDADKADLTGVLSWDLMHLSKNGFDFAPKERGLTGLVDEATFFNPVYQGKVDEDGDLDKQLDKILATQYVEMFFVSLGNPEYKFVVWREAVRSLSTDYIQRMLTRTMRFLAMAHPDKGFDVIATVCDGAS----------------------------------------EHRSFHTRASTEAFRAWSKGASETPFDEFKMGFLHPHHLHVVFNMSDPMHILKKIVNALWHSDIPEKQRSLGMWLPNNEGELEFSLFSLKTGERVFDEIGNEGGRVPLNELAGSVRVFRNHLAAMWNRTSHSCMNVSHSAKV 1062
            QDQ++WNT  G +KG RFHPAT+R+AIY+ G+AG+A YNML N +HLPSP R++ L+  AAPPRTGVL +NI K G+LAA QD DKADL GVL+WDLMHL+KNGF FAP   G TGLVDE TFFNP+Y+ +     +++  L+KI+ATQYVEM+FVS+G PEYKFVVWREAVRSLSTD+IQRML R MR LAMAHPDK FDVIATVCDGA                                         + RSF T A+   F  W KG  E  F  FK+G LHP HLH VFNMSDPMHILKKIVNALWHSDIP KQR LGMW   ++ EL+FS FSLKT +RV++++  +   +   E A ++ +F     + +NRT+ +CMNV  SAKV
Sbjct:  303 QDQVKWNTSHGKAKGFRFHPATMRLAIYIQGIAGTAAYNMLTNVLHLPSPERIKQLRRNAAPPRTGVLTENILKNGKLAATQDTDKADLMGVLAWDLMHLNKNGFSFAPNGGGFTGLVDETTFFNPIYKHEGGIVKEVEPILEKIVATQYVEMYFVSVGKPEYKFVVWREAVRSLSTDFIQRMLIRVMRSLAMAHPDKAFDVIATVCDGAPGQLGEVTLVVAKWMTLERPCVEPYFMIGPFPLVAPSRTPLDSRSFQTHAAISGFCRWIKGPQEGSFTSFKVGILHPVHLHEVFNMSDPMHILKKIVNALWHSDIPAKQRQLGMWCVTDQDELKFSQFSLKTAQRVYNDVEYDNNSITPEERAATLTIFPGMPVSAFNRTNFTCMNVKLSAKV 695          
BLAST of mRNA_H-elongata_contig79196.15581.1 vs. uniprot
Match: D7G5R1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5R1_ECTSI)

HSP 1 Score: 391 bits (1005), Expect = 7.680e-134
Identity = 195/213 (91.55%), Postives = 200/213 (93.90%), Query Frame = 1
Query:    1 LQDQLRWNTRMGSSKGLRFHPATLRIAIYMHGVAGSAGYNMLRNFIHLPSPRRVQ*LQAQAAPPRTGVLVDNIKKYGRLAAEQDADKADLTGVLSWDLMHLSKNGFDFAPKERGLTGLVDEATFFNPVYQGKVDEDGDLDKQLDKILATQYVEMFFVSLGNPEYKFVVWREAVRSLSTDYIQRMLTRTMRFLAMAHPDKGFDVIATVCDGASE 639
             +DQLRWNTRM SSKG RFHPATLRIAIYMHGVAGSAGYNMLRNFIHLPSPRRVQ LQAQAAPPRTGVLVDNI+KYGRLAAEQDADKADLTGVLSWDL HLSKNG DFAPKE  LTGLVDEATFFNPVYQGKVDEDG L KQL KILATQYVE FFVSLGNPEYKFVVWREAVRSLSTDYIQRMLTRTMRFL++AH DKGFDV+ATVCDGASE
Sbjct:   62 FEDQLRWNTRMASSKGFRFHPATLRIAIYMHGVAGSAGYNMLRNFIHLPSPRRVQQLQAQAAPPRTGVLVDNIRKYGRLAAEQDADKADLTGVLSWDLTHLSKNGLDFAPKEGRLTGLVDEATFFNPVYQGKVDEDGGLGKQLGKILATQYVE-FFVSLGNPEYKFVVWREAVRSLSTDYIQRMLTRTMRFLSIAHRDKGFDVVATVCDGASE 273          
BLAST of mRNA_H-elongata_contig79196.15581.1 vs. uniprot
Match: A0A6H5K7Z3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7Z3_9PHAE)

HSP 1 Score: 264 bits (674), Expect = 6.310e-79
Identity = 157/354 (44.35%), Postives = 210/354 (59.32%), Query Frame = 1
Query:   22 NTRMGSSKGLRFHPATLRIAIYMHGVAGSAGYNMLRNFIHLPSPRRVQ*LQAQAAPPRT-GVLVDNIKKYGRLAAEQDADKADLTGVLSWDLMHLSKNGFDFAPKERGLTGLVD-EATFFNPV--YQGKVDEDGDLDKQLDKILATQYVEMFFVSLGNPEYKFVVWREAVRSLSTDYIQRMLTRTMRFLAMAHPDKGFDVIATVCDGASEHRSFHTRASTEAFRAWS--KGASETPFDEFKMGFLHPHHLHVVFNMSDPMHILKKIVNALWHSDIPEKQRSLG--MWLPNNEGELEFSLFSLKTGERVFDEIGNEGGRVPLNELAGSVRVFRNHLAAMWNRTSHSCMNVSHSAK 1059
            N R G  KG R+ P  +R   Y     G AGY ++R+ +HLPS   V   +       T G+  D I+ +G++AAE++  + DL G+L WD MHL+ NGF   P   G++GLV  ++  ++P+   QG VD+   L+  L+  +ATQY+E+++VS+GNP+YKF V+REAVR LS   I RML   M  L  AHPDK  DVI TVCDGA EHRSF T+ +T  F  W+  K   E  F +F M F HPHH   VFNMS P H+L  +VNALW+S +P KQR L    W  + E E E+  FSLKT E V+      GG +   E+A ++R F      M +R SH+CM+V  SAK
Sbjct:   81 NEREGPKKGWRYSPKVVRWYCYALAKMGKAGYALIRDILHLPSISTVNRARRAGRGTATWGLQHDLIEAHGKMAAEENLGRFDLAGILCWDCMHLNTNGFTVRPNGGGISGLVSGDSVLYHPLEAVQG-VDKTISLEDTLETFMATQYLEVWWVSIGNPKYKFCVYREAVRGLSGPKISRMLDEIMLRLYEAHPDKKIDVIGTVCDGAGEHRSFQTKLATSTFGEWADPKSRLEERFADFPMAFNHPHHGEPVFNMSGPPHLLX-VVNALWYSSLPSKQRHLKNLFWNRDTE-EFEWVSFSLKTLETVWVNEERGGGSLSAAEVASNLRRFLKFEPEMLDRNSHNCMSVRLSAK 431          
BLAST of mRNA_H-elongata_contig79196.15581.1 vs. uniprot
Match: A0A6H5KFP1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFP1_9PHAE)

HSP 1 Score: 265 bits (677), Expect = 1.100e-77
Identity = 159/380 (41.84%), Postives = 216/380 (56.84%), Query Frame = 1
Query:    1 LQDQLRWNTRMGSSKGLRFHPATLRIAIYMHGVAGSAGYNMLRNFIHLPSPRRVQ*LQAQAAPPRTGVLVDNIKKYGRLAAEQDADKA--------------------DLTGVLSWDLMHLSKNGFDFAPKERGLTGLVDEATFFN---PVYQGKVDEDGDLDKQLDKILATQYVEMFFVSLGNPEYKFVVWREAVRSLSTDYIQRMLTRTMRFLAMAHPDKGFDVIATVCDGASEHRSFHTRASTEAFRAWSKGAS--ETPFDEFKMGFLHPHHLHVVFNMSDPMHILKKIVNALWHSDIPEKQRSL-GMWLPNNEGELEFSLFSLKTGERVF-DEIGNEGGRVPLNELAGSVRVFRNHLAAMWNRTSHSCMNVSHSAK 1059
            +++ +R+N   GS+KG RF+   LR A Y     G AGY +LR+ +HLP  + VQ + A +   + G     I+ + ++A E +   +                    DL G+L WDLMHL++N F   P   G+ GLVD  +FF       QG VDE   L+K L+  +ATQY+E+F+VS+GNP+YKF V+REAVR LS   I RML      L  AH DK FDVI TVCDGA+EHRSF    +T  F  W+K  S  E    ++ + F HPHH   VFNMSDP+H+LKK+VNALW+S +  K+R L  +W        E + FSLKT E+ + +E G+   R    E A ++R F    AA  +R SH+CM+V  SAK
Sbjct:  270 VEEMMRYNQHRGSAKGWRFNAKVLRWACYALAKMGGAGYQVLRDVLHLPHIKHVQKIVAASTSTKMGEQYHLIEAFAKMACEDNXSTSRYVELFWFYSLLWRPYGLVFDLLGILVWDLMHLNQNDFRVCPNGGGIEGLVDRDSFFRHPLDAVQG-VDEHITLEKTLETFVATQYLEVFWVSIGNPKYKFCVYREAVRGLSGPKISRMLDEITNKLYEAHEDKKFDVIGTVCDGAAEHRSFQQHFATTTFSEWAKSDSVFEQRHKDYPVAFKHPHHDGPVFNMSDPVHLLKKVVNALWYSGLDSKERHLQNLWWNPLTDAPELASFSLKTLEKAWREEEGHRANRTAA-ERAATLRRFLKMDAACLDRDSHTCMSVKLSAK 647          
BLAST of mRNA_H-elongata_contig79196.15581.1 vs. uniprot
Match: D7FVM8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVM8_ECTSI)

HSP 1 Score: 241 bits (615), Expect = 2.980e-74
Identity = 118/128 (92.19%), Postives = 121/128 (94.53%), Query Frame = 1
Query:   85 YMHGVAGSAGYNMLRNFIHLPSPRRVQ*LQAQAAPPRTGVLVDNIKKYGRLAAEQDADKADLTGVLSWDLMHLSKNGFDFAPKERGLTGLVDEATFFNPVYQGKVDEDGDLDKQLDKILATQYVEMFF 468
            YMHGVAGSAGYNMLRNFIHLPSPRRVQ L+AQAAPPRTGVLVDNI+KYGRLAAEQDADKADLTGVLSWDL HLSKNGFDFAPKE G TGLVDEATFFNPVYQ KVDEDGDLDKQLDKILAT+YVE  F
Sbjct:  149 YMHGVAGSAGYNMLRNFIHLPSPRRVQRLEAQAAPPRTGVLVDNIRKYGRLAAEQDADKADLTGVLSWDLTHLSKNGFDFAPKEGGFTGLVDEATFFNPVYQRKVDEDGDLDKQLDKILATKYVERTF 276          
BLAST of mRNA_H-elongata_contig79196.15581.1 vs. uniprot
Match: D7G2I2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2I2_ECTSI)

HSP 1 Score: 193 bits (490), Expect = 4.090e-53
Identity = 85/129 (65.89%), Postives = 105/129 (81.40%), Query Frame = 1
Query:    4 QDQLRWNTRMGSSKGLRFHPATLRIAIYMHGVAGSAGYNMLRNFIHLPSPRRVQ*LQAQAAPPRTGVLVDNIKKYGRLAAEQDADKADLTGVLSWDLMHLSKNGFDFAPKERGLTGLVDEATFFNPVYQ 390
            +DQ++WNT  G +KG RFHPAT+R+AIY+ G+AG+A YNML N +HLPSP R++ L+  AAPPRTGVL +NI KYG+LAA QDADK DL GVL+WDLMHL+K+GF F P   G TGLVDE TFFNP+Y+
Sbjct:  403 EDQVKWNTSHGKAKGFRFHPATMRLAIYIQGIAGTAAYNMLMNVLHLPSPERIKQLRRNAAPPRTGVLTENILKYGKLAATQDADKVDLMGVLTWDLMHLNKSGFSFTPNGGGFTGLVDETTFFNPIYK 531          
BLAST of mRNA_H-elongata_contig79196.15581.1 vs. uniprot
Match: A0A6H5KQL9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQL9_9PHAE)

HSP 1 Score: 181 bits (458), Expect = 5.630e-52
Identity = 98/216 (45.37%), Postives = 137/216 (63.43%), Query Frame = 1
Query:   13 LRWNTRMGSSKGLRFHPATLRIAIYMHGVAGSAGYNMLRNFIHLPSPRRVQ*LQAQAAPPRT-GVLVDNIKKYGRLAAEQDADKADLTGVLSWDLMHLSKNGFDFAPKERGLTGLVDEATFFNPVYQGK--VDEDGDLDKQLDKILATQYVEMFFVSLGNPEYKFVVWREAVRSLSTDYIQRMLTRTMRFLAMAHPDKGFDVIATVCDGASEHRSF 651
            + +N   GSSKG RF P  LR A+Y     GSAGYN++++ +HLPS   ++ ++  AA   T GV    ++ YG++AAE +  + DL G+L WDLMHL+ NGF   P   G+ GLVD  +       G   V ++  L++ L+  +ATQY+E+F+VS+GN +YKF V+REAV+ L+   ++RML   M  L   H DK FDVI TVCDGA+EHRSF
Sbjct:    2 MNYNKFQGSSKGWRFSPKVLRWALYALANMGSAGYNVIQDVLHLPSIGHLRKVRRAAAGTTTWGVQHHLVEAYGKMAAEDNLGRFDLCGILVWDLMHLNTNGFKVRPNGGGIQGLVDPDSILRHPLDGVKGVADNISLEETLETFVATQYLEVFWVSIGNLKYKFCVYREAVKGLTGPKLKRMLNEVMLRLYTVHEDKQFDVICTVCDGAAEHRSF 217          
BLAST of mRNA_H-elongata_contig79196.15581.1 vs. uniprot
Match: D8LK65_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK65_ECTSI)

HSP 1 Score: 182 bits (462), Expect = 9.180e-52
Identity = 103/204 (50.49%), Postives = 128/204 (62.75%), Query Frame = 1
Query:  457 EMFFVSLGNPEYKFVVWREAVRSLSTDYIQRMLTRTMRFLAMAHPDKGFDVIATVCDGASEHRSFHTRASTEAFRAWSKGAS--ETPFDEFKMGFLHPHHLHVVFNMSDPMHILKKIVNALWHSDIPEKQRSLG-MWLPNNEGELEFSLFSLKTGERVFDEIGNEGGRVPLNELAGSVRVFRNHLAAMWNRTSHSCMNVSHSAK 1059
            ++F+VSLGNP YKF V+REAVR L+   + RML   M  L  AH DK FDVI TVCDGA+EHRSF    +  AF  W++G S  E    +FK+ F HP H   VFNMSDP+H+LKK+VNALWHSDIP KQR L  +W      + E+  FSLKT E+V+ E    GG   + E A  +  F      M+ R SH+CM+V  SAK
Sbjct:   58 KVFWVSLGNPTYKFCVFREAVRGLTGPKLARMLDDIMTSLYQAHSDKNFDVIGTVCDGAAEHRSFQKYLAEIAFSEWARGDSAFEKRMGDFKVAFKHPSHGGPVFNMSDPVHLLKKVVNALWHSDIPSKQRDLKKLWYNEAAEDYEWVSFSLKTLEKVWKEEEAGGGVRSVAEQAAHLIRFLKFDPEMFTRNSHNCMSVGLSAK 261          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig79196.15581.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
D7FZI2_ECTSI2.230e-15464.31Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KVF4_9PHAE2.950e-15363.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L5M0_9PHAE6.430e-14656.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G5R1_ECTSI7.680e-13491.55Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K7Z3_9PHAE6.310e-7944.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KFP1_9PHAE1.100e-7741.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FVM8_ECTSI2.980e-7492.19Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G2I2_ECTSI4.090e-5365.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KQL9_9PHAE5.630e-5245.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LK65_ECTSI9.180e-5250.49Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig79196contigH-elongata_contig79196:145..2780 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size1062
Cds size768
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig79196.15581.1prot_H-elongata_contig79196.15581.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig79196 917..2780 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931197.0915709-UTR-H-elongata_contig79196:144..3661622931197.0915709-UTR-H-elongata_contig79196:144..366Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig79196 145..366 +
1691679737.4655437-UTR-H-elongata_contig79196:144..3661691679737.4655437-UTR-H-elongata_contig79196:144..366Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig79196 145..366 +
1622931197.1059666-UTR-H-elongata_contig79196:844..9161622931197.1059666-UTR-H-elongata_contig79196:844..916Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig79196 845..916 +
1691679737.474015-UTR-H-elongata_contig79196:844..9161691679737.474015-UTR-H-elongata_contig79196:844..916Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig79196 845..916 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931197.1200643-CDS-H-elongata_contig79196:916..10811622931197.1200643-CDS-H-elongata_contig79196:916..1081Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79196 917..1081 +
1691679737.482088-CDS-H-elongata_contig79196:916..10811691679737.482088-CDS-H-elongata_contig79196:916..1081Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79196 917..1081 +
1622931197.1345446-CDS-H-elongata_contig79196:1347..15291622931197.1345446-CDS-H-elongata_contig79196:1347..1529Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79196 1348..1529 +
1691679737.490336-CDS-H-elongata_contig79196:1347..15291691679737.490336-CDS-H-elongata_contig79196:1347..1529Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79196 1348..1529 +
1622931197.151606-CDS-H-elongata_contig79196:2359..27801622931197.151606-CDS-H-elongata_contig79196:2359..2780Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79196 2360..2780 +
1691679737.502476-CDS-H-elongata_contig79196:2359..27801691679737.502476-CDS-H-elongata_contig79196:2359..2780Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79196 2360..2780 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig79196.15581.1

>prot_H-elongata_contig79196.15581.1 ID=prot_H-elongata_contig79196.15581.1|Name=mRNA_H-elongata_contig79196.15581.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=256bp
MHLSKNGFDFAPKERGLTGLVDEATFFNPVYQGKVDEDGDLDKQLDKILA
TQYVEMFFVSLGNPEYKFVVWREAVRSLSTDYIQRMLTRTMRFLAMAHPD
KGFDVIATVCDGASEHRSFHTRASTEAFRAWSKGASETPFDEFKMGFLHP
HHLHVVFNMSDPMHILKKIVNALWHSDIPEKQRSLGMWLPNNEGELEFSL
FSLKTGERVFDEIGNEGGRVPLNELAGSVRVFRNHLAAMWNRTSHSCMNV
SHSAKV
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mRNA from alignment at H-elongata_contig79196:145..2780+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig79196.15581.1 ID=mRNA_H-elongata_contig79196.15581.1|Name=mRNA_H-elongata_contig79196.15581.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2636bp|location=Sequence derived from alignment at H-elongata_contig79196:145..2780+ (Himanthalia elongata Himel1 dioecious)
CTGCAAGACCAACTCCGATGGAACACCAGGATGGGGAGTTCGAAAGGGTT GCGATTTCATCCGGCGACGCTGCGAATCGCCATCTACATGCACGGGGTGG CTGGATCGGCTGGATACAACATGCTGAGGAACTTCATACATTTACCCAGT CCTAGGCGCGTTCAGTAGCTGCAAGCACAGGCCGCACCTCCGAGGACGGG AGTGCTCGTCGACAACATCAAGGTACGAATGTCGTTTAGGGTAGGGGGTT AGGGTGCTTTGTGCTTGCTCTGGTGGATGCCTCAAGGCTCTTCGCCTACA CGTCATGGGAAGGGTGGGATGTGACAGCATATACAAAGTCGTGCGTGTGA CATTCGTAGTTAGGCCTGTTTCATGTCCAGAGTGCAGTGGTCGTCTACAG CTAACTGTCGTATCGCTACTGATTGCGTACATCACCGTGTGTTTGGAGCC ATGTTTTCCCAGATAAGGTTGGCCGTGCAATAGTAACATAGAATTGTGTC CCAATACCGCCGCGGGCCTTAGTACGTATGTTCTGGTGATGTCTGTAGGT TTAGATGCCGTCGCAGCTATTGGTGCTCCCAAGCGAGTCTATGTATACTT GCACGGCAGATGGCATACCTCGAAAAAATCCCAGTCTTGTGTATTTAATA CCGGAACGTTTTCCTTATTTTTTTTTATGGGTTATGTTCTGTCATGACAG AAGTACGGCAGGCTGGCCGCCGAGCAAGATGCGGATAAGGCGGACCTCAC CGGTGTTCTGAGTTGGGATTTGATGCATCTCAGCAAGAACGGGTTCGACT TCGCCCCGAAGGAAAGAGGACTCACGGGGTTGGTGGACGAGGCGACGTTC TTCAACCCCGTATACCAAGGGAAGGTGGATGAGGACGGAGATTTGGACAA GCAATTGGACAAGATACTGGCGACCCAGTACGTGGAGGTATGTGCTTCAT AGTTTCCTTAAGAAAAAGGTCGGCCAGTTTGCAGTGGACATCTCTCTGGT GTGCGGGCTTGGAGTTAAGGTGCAGGTCTTTGTCGCCGGAATTTCCACGT GCACAACATGCACACCGTGTTCCACGCCGAAACATCAAATAGACCTACAA GTTGTGGACACGCCCCCCTCCCCTACACTGACATGACGTCTTCTCCCCAC CCCCTTTCCTCGGCACCACTGCGACGCTCGAAACAACGTACCTCCCGACG TAGATGTTCTTCGTTAGCCTGGGCAACCCGGAATACAAGTTCGTCGTGTG GCGGGAGGCTGTGCGGTCTCTCAGCACTGACTACATCCAACGGATGCTCA CGAGGACCATGCGGTTCCTGGCGATGGCACACCCAGACAAAGGGTTCGAC GTGATTGCCACCGTATGCGACGGGGCTTCCGAGCAGTGAGTGTTGTCCAC CAACGTAAGCGCTAAAAACAATTCCGAATACAACCCCCTCACCCACTCAC CTCCGTCTCCCCCCTGGGAGTTTTTATTTTTTGGTTTTGTATTTTGGTCT TTCTTCAAGAAAACCTGTCATTGGTCCCTACTTTGGAGGTGTTGCTATCC ACGATGCCCTGTGCGAAAGTCTATAGAAATTTGTGACAACCCTCTCCCAC CCTTTTTTCTCTCGATGCTCGAGTTGAGGGCCTATCTATTAGGAGCGAAC GTTGTTTTATATTATATTTAAAATATATTTTCTCGGTATTGCTCCTCCCA TCGCGAAAAAAAAATCGGGGAAAAAAATTGCTTGGAAAAAAAGGTGGCGC TGCTGGGAATCGAACCCGCCACCTCTGGGAGTGAATGACCAAAAAACAGA GTCCTGAAGTCATACTTGAAGACAAAATACATCGCCCAAAGTGGGTGGTA GATTGGGCGGTATCTTTCGAAGTTATGGTGCTCTACGGCCATCAGTTCTA ATCCTCTGAACCTGAAAGGTGGTAGATTAGATTTTCCTTGGCGCCATATT TTTTTGCCCGTCCCCTTTTTCTCCCTTTTTTATCTTTCCTCCGGATATTT GGTGTGTACTTCGAAGTAATTATTTTGGCGGTACCAGGTTTTATGTTTTA GTTGTAGTTTTATTGAGGCTTCAAAGCAAACTATGGTACTATAGCTCGAA ACACAGCAGTCGTTTACAAGCGATACGAATCGTCATGCGCAACTTGCAGA CTATGCAAACAGCCCGTTGTGACGCCACCTTCTCCTCGTCCTTGGTTTGT CCGCCACCCCAACAGCCGTTCCTTCCACACACGCGCCTCCACCGAAGCAT TCCGCGCATGGAGCAAGGGAGCGAGCGAGACTCCTTTCGACGAGTTCAAG ATGGGCTTTCTCCATCCTCATCACCTTCACGTAGTTTTTAACATGAGTGA CCCGATGCACATCTTGAAGAAGATAGTAAATGCCCTGTGGCATAGCGATA TCCCCGAAAAACAGAGGTCACTGGGGATGTGGCTCCCCAACAATGAGGGT GAGCTTGAGTTCAGTCTGTTTTCTTTGAAGACAGGCGAACGCGTCTTCGA CGAGATCGGGAACGAAGGAGGCCGTGTGCCTTTGAACGAGCTTGCGGGCT CTGTTCGCGTCTTTCGCAACCACCTTGCAGCCATGTGGAACAGGACAAGC CACTCGTGCATGAACGTGTCGCACTCCGCGAAGGTG
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Coding sequence (CDS) from alignment at H-elongata_contig79196:145..2780+

>mRNA_H-elongata_contig79196.15581.1 ID=mRNA_H-elongata_contig79196.15581.1|Name=mRNA_H-elongata_contig79196.15581.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1536bp|location=Sequence derived from alignment at H-elongata_contig79196:145..2780+ (Himanthalia elongata Himel1 dioecious)
ATGCATCTCAGCAAGAACGGGTTCGACTTCGCCCCGAAGGAAAGAGGACT
CACGGGGTTGGTGGACGAGGCGACGTTCTTCAACCCCGTATACCAAGGGA
AGGTGGATGAGGACGGAGATTTGGACAAGCAATTGGACAAGATACTGGCG
ACCCAGTACGTGGAGATGCATCTCAGCAAGAACGGGTTCGACTTCGCCCC
GAAGGAAAGAGGACTCACGGGGTTGGTGGACGAGGCGACGTTCTTCAACC
CCGTATACCAAGGGAAGGTGGATGAGGACGGAGATTTGGACAAGCAATTG
GACAAGATACTGGCGACCCAGTACGTGGAGATGTTCTTCGTTAGCCTGGG
CAACCCGGAATACAAGTTCGTCGTGTGGCGGGAGGCTGTGCGGTCTCTCA
GCACTGACTACATCCAACGGATGCTCACGAGGACCATGCGGTTCCTGGCG
ATGGCACACCCAGACAAAGGGTTCGACGTGATTGCCACCGTATGCGACGG
GGCTTCCGAGCAATGTTCTTCGTTAGCCTGGGCAACCCGGAATACAAGTT
CGTCGTGTGGCGGGAGGCTGTGCGGTCTCTCAGCACTGACTACATCCAAC
GGATGCTCACGAGGACCATGCGGTTCCTGGCGATGGCACACCCAGACAAA
GGGTTCGACGTGATTGCCACCGTATGCGACGGGGCTTCCGAGCACCGTTC
CTTCCACACACGCGCCTCCACCGAAGCATTCCGCGCATGGAGCAAGGGAG
CGAGCGAGACTCCTTTCGACGAGTTCAAGATGGGCTTTCTCCATCCTCAT
CACCTTCACGTAGTTTTTAACATGAGTGACCCGATGCACATCTTGAAGAA
GATAGTAAATGCCCTGTGGCATAGCGATATCCCCGAAAAACAGAGGTCAC
TGGGGATGTGGCTCCCCAACAATGAGGGTGAGCTTGAGTTCAGTCTGTTT
TCTTTGAAGACAGGCGAACGCGTCTTCGACGAGATCGGGAACGAAGGAGG
CCGTGTGCCTTTGAACGAGCTTGCGGGCTCTGTTCGCGTCTTTCGCAACC
ACCTTGCAGCCATGTGGAACAGGACAAGCCACTCGTGCATGAACGTGTCG
CACTCCGCGAAGGTGCCGTTCCTTCCACACACGCGCCTCCACCGAAGCAT
TCCGCGCATGGAGCAAGGGAGCGAGCGAGACTCCTTTCGACGAGTTCAAG
ATGGGCTTTCTCCATCCTCATCACCTTCACGTAGTTTTTAACATGAGTGA
CCCGATGCACATCTTGAAGAAGATAGTAAATGCCCTGTGGCATAGCGATA
TCCCCGAAAAACAGAGGTCACTGGGGATGTGGCTCCCCAACAATGAGGGT
GAGCTTGAGTTCAGTCTGTTTTCTTTGAAGACAGGCGAACGCGTCTTCGA
CGAGATCGGGAACGAAGGAGGCCGTGTGCCTTTGAACGAGCTTGCGGGCT
CTGTTCGCGTCTTTCGCAACCACCTTGCAGCCATGTGGAACAGGACAAGC
CACTCGTGCATGAACGTGTCGCACTCCGCGAAGGTG
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