mRNA_H-elongata_contig79189.15579.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig79189.15579.1
Unique NamemRNA_H-elongata_contig79189.15579.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig79189.15579.1 vs. uniprot
Match: A0A6H5L011_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L011_9PHAE)

HSP 1 Score: 265 bits (678), Expect = 2.630e-76
Identity = 179/377 (47.48%), Postives = 218/377 (57.82%), Query Frame = 1 
Query:    1 QVGVLQAFGLSMKPGESVYVALRLLPWKERVKTGSAKWGDLGASWPSDLSARYDLLHLYNSEASPIPTLRVEVWRSALRVLDDLIGYATITTAPLLARPTCTSERWHTLFIPEDGVPSEQLRQGGLLSGAETSPRSRASSTGTILLSLSFSPTEGTPNLRPLSVSSTPSMATRNARAALLPSVSPSSGTHTA--GWKEGDTRRQTPGPRVKTPAAPETSRLGDTE------GVESSPT---RPETYIPNTPSGLKDYVRSTARSSSN----------------------PE--SGESPSGPRSGWGVDTGPKDVQDAEDSGVGGIIGGVGSEGMGIKKGEVHIFRMKSYPTPVWCQVCRRLLLGVRGQTEGVVCCSM 1026
            QVGVLQAF LS+KPGESVYVALRLLPWKERVKTGSAKWGDLGASWPS  SAR+DLLHLYNS+A+P+PTLRVEVWRSA+RVLDDL+GYA I  APLLARP  TSERWH L  P     +   RQ G ++GA     S  SS GTILLSL F PT GTP++RPL    TP +   + R     S    +G+ T+  GW  GD  R+TP  R +TPA PE   LG+        GV +S +        + +T   +     S+A S                         PE  +GE+P G      VDTG  +V +         + G   E  G  KG+VH+FR+K++  PVWC++C   LLG+R Q      C M
Sbjct:  680 QVGVLQAFDLSLKPGESVYVALRLLPWKERVKTGSAKWGDLGASWPSQASARHDLLHLYNSDATPVPTLRVEVWRSAMRVLDDLLGYAAINMAPLLARPGSTSERWHVLSDPNSASTTGDPRQTGDVAGA-----SPPSSAGTILLSLGFIPTGGTPSIRPLPA--TPLVIGSSYRTPRHTSSESPAGSSTSNFGWVGGDNGRRTP--RAETPAIPEGFSLGEAAMPGGGGGVGTSGSGAAERADVLSSTQRAVDAQAASSALSRDGDVGGGEALDDAERDGGRGGLLLPEEAAGETPDGGGGVVEVDTGSGEVLE---------LNGTQDEEPG--KGKVHLFRVKTFSAPVWCEICEGFLLGMRNQGFCCEACGM 1036
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BLAST of mRNA_H-elongata_contig79189.15579.1 vs. uniprot
Match: D7G411_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G411_ECTSI)

HSP 1 Score: 261 bits (667), Expect = 7.710e-75
Identity = 177/377 (46.95%), Postives = 218/377 (57.82%), Query Frame = 1 
Query:    1 QVGVLQAFGLSMKPGESVYVALRLLPWKERVKTGSAKWGDLGASWPSDLSARYDLLHLYNSEASPIPTLRVEVWRSALRVLDDLIGYATITTAPLLARPTCTSERWHTLFIPEDGVPSEQLRQGGLLSGAETSPRSRASSTGTILLSLSFSPTEGTPNLRPLSVSSTPSMATRNARAALLPSVSPSSGTHTA--GWKEGDTRRQTPGPRVKTPAAPETSRLGDT----EGVESSPTRPETYI-PNTPSGLKDYVRSTARSSSNPESGESPSGPRSGWGVDTGPKDVQDAE-DSGVGGII------GGVGSEGMGIKK---------------------GEVHIFRMKSYPTPVWCQVCRRLLLGVRGQTEGVVCCSM 1026
            QVGVLQAF LS+KPGESVYVALRLLPW+ERVKTGSAKWG++GASWPS +SAR+DLLHLYNS+A+P+PTLRVEVWRSA+RVLDDL+GYA I  APLLARP  TSERWH L  P     +   R  G ++G  TSP S A   GTILLSL F+PT GTP++RPL    TP +   + R     S    +G  T+  GW  GD  R+TP  R +TPA PE   LG+     EG              +  S  +  V + A SS+    G+   G           + + DAE D G GG++      G    EG G+ K                     G+VH+FR+K+Y  PVWC++C R LLG+R Q      C M
Sbjct:  664 QVGVLQAFDLSLKPGESVYVALRLLPWEERVKTGSAKWGEIGASWPSQVSARHDLLHLYNSDATPVPTLRVEVWRSAMRVLDDLLGYAAINMAPLLARPGSTSERWHVLSDPNHASTTGDPRLSGEVAG--TSPPSSA---GTILLSLGFTPTGGTPSIRPLPA--TPLVIGSSNRTPRHASSESPAGCSTSNFGWVGGDNGRRTP--RAETPAIPEGFSLGEAAMPGEGXXXXXXXXXXXERADALSSTQRVVDAQAASSALIHDGDVGGG-----------EALDDAERDGGRGGLLLPEEAAGETPDEGGGVVKVDAGSGEVLELNGTQEQEPGKGKVHLFRVKTYSAPVWCEICGRFLLGMRNQGFCCEACGM 1020
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BLAST of mRNA_H-elongata_contig79189.15579.1 vs. uniprot
Match: A0A835ZCX8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCX8_9STRA)

HSP 1 Score: 105 bits (262), Expect = 3.680e-21
Identity = 59/169 (34.91%), Postives = 79/169 (46.75%), Query Frame = 1 
Query:    1 QVGVLQAFGLSMKPGESVYVALRLLPWKERVKTGSAKWGDLGASWPSDL-------------------SARYDLLHLYNSEASPIPTLRVEVWRSALRVLDDLIGYAT----------------------------------ITTAPLLARPTCTSERWHTLFIPEDGV 348
            +V V+QA+ L + PG+ VY  L+LLPWKER KT SA WGD+GA W                           ++LHL NSEA P+P LRVE+WR AL+++D+L+G                                     ++ APL+ RP   +ERWH L  P  G 
Sbjct:  649 RVRVMQAYQLPLAPGDVVYAMLQLLPWKERAKTDSAPWGDMGAIWAPPAXXXXXXXXXXXXXXXXXGGDGALEMLHLENSEAPPVPVLRVELWRRALKIMDELLGAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQVSAAPLMRRPGARAERWHALQPPSRGT 817
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BLAST of mRNA_H-elongata_contig79189.15579.1 vs. uniprot
Match: A0A7S2U4S1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U4S1_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 9.160e-6
Identity = 33/126 (26.19%), Postives = 62/126 (49.21%), Query Frame = 1 
Query:   10 VLQAFGLSMKPGESVYVALRLLPWKERVKTGSAKW------GDLGASWPS-DLSARYDLLHLYNSEASPIPTLRVEVWRSALRVLDDLIGYATITTAPLLARPTCTSERWHTLFIPEDGVPSEQLR 366
            +L+   L+   G +V   + L PW  R++T   +        D+   W   D    Y ++H +N+E +PIPT+ V++  S+L++ +  +   +++  PL+  P C + RW    I +   PS Q +
Sbjct:  196 ILRGQRLNCAIGSTVQAVVALPPWNGRIRTEKTETYEGPPGADVCLRWDDLDQDLSYSMVHAWNNEDTPIPTITVDMMLSSLQLFESFLCSVSLSCEPLMRSPGCWNARWCPASISQT-PPSSQAQ 320
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig79189.15579.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5L011_9PHAE2.630e-7647.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G411_ECTSI7.710e-7546.95Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZCX8_9STRA3.680e-2134.91Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2U4S1_9STRA9.160e-626.19Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig79189contigH-elongata_contig79189:565..2031 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1035
Cds size720
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig79189.15579.1prot_H-elongata_contig79189.15579.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig79189 565..1284 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931196.8471587-CDS-H-elongata_contig79189:564..12841622931196.8471587-CDS-H-elongata_contig79189:564..1284Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79189 565..1284 -
1691679737.3792646-CDS-H-elongata_contig79189:564..12841691679737.3792646-CDS-H-elongata_contig79189:564..1284Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79189 565..1284 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931196.870462-UTR-H-elongata_contig79189:1284..13411622931196.870462-UTR-H-elongata_contig79189:1284..1341Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig79189 1285..1341 -
1691679737.3870208-UTR-H-elongata_contig79189:1284..13411691679737.3870208-UTR-H-elongata_contig79189:1284..1341Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig79189 1285..1341 -
1622931196.8958259-UTR-H-elongata_contig79189:1605..17611622931196.8958259-UTR-H-elongata_contig79189:1605..1761Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig79189 1606..1761 -
1691679737.394929-UTR-H-elongata_contig79189:1605..17611691679737.394929-UTR-H-elongata_contig79189:1605..1761Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig79189 1606..1761 -
1622931196.921419-UTR-H-elongata_contig79189:1930..20311622931196.921419-UTR-H-elongata_contig79189:1930..2031Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig79189 1931..2031 -
1691679737.4046195-UTR-H-elongata_contig79189:1930..20311691679737.4046195-UTR-H-elongata_contig79189:1930..2031Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig79189 1931..2031 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig79189.15579.1

>prot_H-elongata_contig79189.15579.1 ID=prot_H-elongata_contig79189.15579.1|Name=mRNA_H-elongata_contig79189.15579.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=240bp
MAHPFHPGRRRPIGATPPRRVIVRRGNLASLEGVLDWDDTSLAELLPHRG
DSKSPSSIRVLDAIYGHQKRPSSAAPQRIPQQRDPHRRVERRGHKEANAG
AESQNACCTGNLPPRGHRRGRVLSYPARDIYPKHPKRFEGLRQEHRQEQQ
QPRKRRESFWAQVRMGSRHGSQRRTRCGGQRCWRHNRRRWFGGDGDKKGR
SSYLQNEELPHSGVVPGLQAAPARGEGSNRGRRVLQHGVA
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mRNA from alignment at H-elongata_contig79189:565..2031-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig79189.15579.1 ID=mRNA_H-elongata_contig79189.15579.1|Name=mRNA_H-elongata_contig79189.15579.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1467bp|location=Sequence derived from alignment at H-elongata_contig79189:565..2031- (Himanthalia elongata Himel1 dioecious)
CAGGTGGGGGTGCTCCAGGCCTTCGGTCTCTCCATGAAACCCGGAGAGAG
CGTGTACGTCGCCCTCCGTTTGCTGCCTTGGAAGGAAAGGGTCAAGACGG
GGTAAGTCCACTGTCAAACTGTCAAACTTTCGGTGTGACAAGGAAGGTGG
TGTTCCATATGGCGCTTATGGCGCTGCTTATCTATGTTTCTTCTTTTTTT
ACAGACTGTCCATCGTCATGGTGATTTTGTACTGATTTCACTGAAAGTAC
TCACCCACACCTCACGGCAGATCTGCGAAGTGGGGAGACCTCGGGGCGTC
GTGGCCGTCTGACCTATCCGCCAGATACGACCTGCTGCACCTGTACAACA
GCGAAGCCTCTCCTATCCCGACCCTGAGGGTGGAGGTTTGGAGGTCTGCC
CTGCGTGTTCTCGACGATTTGATTGGGTGAGTCTGCCCGAATTCGCCGCG
AGACACAGGATAAAATTGTCCTATCGTAACGGAACGCAATGCCCTCAGAT
ATGCGTTTTTCCGAGCGTTTGCGATCGCTTCTGCCTACGGTCTGGGTTAA
TGCCTCTCCGAGGTCTCCGCTGGGGAACCACAACGATATTTTTAGATCTC
CCATACCACCGTATACATGGGCATGTTCAACTGGAGCCTGAAAATCCCCT
CCGCTCTTATTGAAACCCTACGGCCGGGCTTCCGTTGCAGGTACGCGACG
ATCACTACGGCACCGCTCCTCGCGCGGCCCACCTGCACGTCGGAAAGATG
GCACACCCTTTTCATCCCGGAAGACGGCGTCCCATCGGAGCAACTCCGCC
AAGGCGGGTTATTGTCCGGCGCGGAAACCTCGCCTCGCTCGAGGGCGTCC
TCGACTGGGACGATACTTCTCTCGCTGAGCTTCTCCCCCACCGAGGGGAC
TCCAAATCTCCGTCCTCTATCCGTGTCCTCGACGCCATCTATGGCCACCA
GAAACGCCCGAGCAGCGCTGCTCCCCAGCGTATCCCCCAGCAGCGGGACC
CACACCGCAGGGTGGAAAGAAGGGGACACAAGGAGGCAAACGCCGGGGCC
GAGAGTCAAAACGCCTGCTGCACCGGAAACCTCCCGCCTCGGGGACACCG
AAGGGGTCGAGTCCTCTCCTACCCGGCCAGAGACATATATCCCAAACACC
CCAAGCGGTTTGAAGGATTACGTCAGGAGCACCGCCAGGAGCAGCAGCAA
CCCCGAAAGCGGAGAGAGTCCTTCTGGGCCCAGGTCAGGATGGGGAGTCG
ACACGGGTCCCAAAGACGTACAAGATGCGGAGGACAGCGGTGTTGGAGGC
ATAATAGGAGGCGTTGGTTCGGAGGGGATGGGGATAAAAAAGGGAGAAGT
TCATATCTTCAGAATGAAGAGCTACCCCACTCCGGTGTGGTGCCAGGTCT
GCAGGCGGCTCCTGCTAGGGGTGAGGGGTCAAACCGAGGGCGTCGTGTGC
TGCAGCATGGCGTGGCA
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Coding sequence (CDS) from alignment at H-elongata_contig79189:565..2031-

>mRNA_H-elongata_contig79189.15579.1 ID=mRNA_H-elongata_contig79189.15579.1|Name=mRNA_H-elongata_contig79189.15579.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1440bp|location=Sequence derived from alignment at H-elongata_contig79189:565..2031- (Himanthalia elongata Himel1 dioecious)
ATGGCACACCCTTTTCATCCCGGAAGACGGCGTCCCATCGGAGCAACTCC
GCCAAGGCGGGTTATTGTCCGGCGCGGAAACCTCGCCTCGCTCGAGGGCG
TCCTCGACTGGGACGATACTTCTCTCGCTGAGCTTCTCCCCCACCGAGGG
GACTCCAAATCTCCGTCCTCTATCCGTGTCCTCGACGCCATCTATGGCCA
CCAGAAACGCCCGAGCAGCGCTGCTCCCCAGCGTATCCCCCAGCAGCGGG
ACCCACACCGCAGGGTGGAAAGAAGGGGACACAAGGAGGCAAACGCCGGG
GCCGAGAGTCAAAACGCCTGCTGCACCGGAAACCTCCCGCCTCGGGGACA
CCGAAGGGGTCGAGTCCTCTCCTACCCGGCCAGAGACATATATCCCAAAC
ACCCCAAGCGGTTTGAAGGATTACGTCAGGAGCACCGCCAGGAGCAGCAG
CAACCCCGAAAGCGGAGAGAGTCCTTCTGGGCCCAGGTCAGGATGGGGAG
TCGACACGGGTCCCAAAGACGTACAAGATGCGGAGGACAGCGGTGTTGGA
GGCATAATAGGAGGCGTTGGTTCGGAGGGGATGGGGATAAAAAAGGGAGA
AGTTCATATCTTCAGAATGAAGAGCTACCCCACTCCGGTGTGGTGCCAGG
TCTGCAGGCGGCTCCTGCTAGGGGTGAGGGGTCAAACCGAGGGCGTCGTG
TGCTGCAGCATGGCGTGGCAATGGCACACCCTTTTCATCCCGGAAGACGG
CGTCCCATCGGAGCAACTCCGCCAAGGCGGGTTATTGTCCGGCGCGGAAA
CCTCGCCTCGCTCGAGGGCGTCCTCGACTGGGACGATACTTCTCTCGCTG
AGCTTCTCCCCCACCGAGGGGACTCCAAATCTCCGTCCTCTATCCGTGTC
CTCGACGCCATCTATGGCCACCAGAAACGCCCGAGCAGCGCTGCTCCCCA
GCGTATCCCCCAGCAGCGGGACCCACACCGCAGGGTGGAAAGAAGGGGAC
ACAAGGAGGCAAACGCCGGGGCCGAGAGTCAAAACGCCTGCTGCACCGGA
AACCTCCCGCCTCGGGGACACCGAAGGGGTCGAGTCCTCTCCTACCCGGC
CAGAGACATATATCCCAAACACCCCAAGCGGTTTGAAGGATTACGTCAGG
AGCACCGCCAGGAGCAGCAGCAACCCCGAAAGCGGAGAGAGTCCTTCTGG
GCCCAGGTCAGGATGGGGAGTCGACACGGGTCCCAAAGACGTACAAGATG
CGGAGGACAGCGGTGTTGGAGGCATAATAGGAGGCGTTGGTTCGGAGGGG
ATGGGGATAAAAAAGGGAGAAGTTCATATCTTCAGAATGAAGAGCTACCC
CACTCCGGTGTGGTGCCAGGTCTGCAGGCGGCTCCTGCTAGGGGTGAGGG
GTCAAACCGAGGGCGTCGTGTGCTGCAGCATGGCGTGGCA
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