mRNA_H-elongata_contig79152.15575.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig79152.15575.1
Unique NamemRNA_H-elongata_contig79152.15575.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig79152.15575.1 vs. uniprot
Match: D8LQW1_ECTSI (tRNA (guanine-N(7)-)-methyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQW1_ECTSI)

HSP 1 Score: 168 bits (425), Expect = 1.720e-49
Identity = 74/91 (81.32%), Postives = 83/91 (91.21%), Query Frame = 1 
Query:   82 LLPHFLERHQLEKMFFCFPDPHFKAKNHRRRIISVPLLTEYAFFLRPGGRLYMITDVEELHRWHVQKADAHPCFRSVPREEAVSENIFRSV 354
            LLPHFLERHQLEKMFFCFPDPHFKAKNHRRRIISVPLLTEYAF+LRPGG LYMITDVEELH+WHV+KA+AHPCF +VPR EA  +   +++
Sbjct:  169 LLPHFLERHQLEKMFFCFPDPHFKAKNHRRRIISVPLLTEYAFYLRPGGLLYMITDVEELHQWHVEKAEAHPCFEAVPRGEAEKDPAVKAM 259
[Close]
BLAST of mRNA_H-elongata_contig79152.15575.1 vs. uniprot
Match: A0A7S4DB82_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DB82_HETAK)

HSP 1 Score: 134 bits (338), Expect = 8.610e-38
Identity = 56/92 (60.87%), Postives = 71/92 (77.17%), Query Frame = 1 
Query:   85 LPHFLERHQLEKMFFCFPDPHFKAKNHRRRIISVPLLTEYAFFLRPGGRLYMITDVEELHRWHVQKADAHPCFRSVPREEAVSENIFRSVRS 360
            LP+F ++ ++EKMFFCFPDPHFKAKNHRRRI++  LL EYA FLRPGGRLY +TDVE+LH WHV+K   HPCFR +  EE  ++     +R+
Sbjct:   40 LPNFFKKGEIEKMFFCFPDPHFKAKNHRRRIVNTALLGEYAHFLRPGGRLYAVTDVEDLHNWHVEKCTNHPCFRPLTEEEMAADPCVTLIRT 131
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BLAST of mRNA_H-elongata_contig79152.15575.1 vs. uniprot
Match: A0A7S3HPW2_9STRA (tRNA (guanine-N(7)-)-methyltransferase n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HPW2_9STRA)

HSP 1 Score: 137 bits (344), Expect = 1.030e-37
Identity = 57/85 (67.06%), Postives = 72/85 (84.71%), Query Frame = 1 
Query:   85 LPHFLERHQLEKMFFCFPDPHFKAKNHRRRIISVPLLTEYAFFLRPGGRLYMITDVEELHRWHVQKADAHPCFRSVPREEAVSEN 339
            LP+F  +HQ+EK+F CFPDPHFKAKNHRRRI+S  LL+EYA+ L+PGGRLY +TDVEELH+WHV+K +AHP FR VP  EA++ +
Sbjct:  114 LPNFFRKHQMEKIFICFPDPHFKAKNHRRRIVSHILLSEYAYLLKPGGRLYTVTDVEELHKWHVEKCEAHPSFRRVPDSEALAND 198
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BLAST of mRNA_H-elongata_contig79152.15575.1 vs. uniprot
Match: A0A8K1C687_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C687_PYTOL)

HSP 1 Score: 129 bits (323), Expect = 1.230e-34
Identity = 53/90 (58.89%), Postives = 67/90 (74.44%), Query Frame = 1 
Query:   85 LPHFLERHQLEKMFFCFPDPHFKAKNHRRRIISVPLLTEYAFFLRPGGRLYMITDVEELHRWHVQKADAHPCFRSVPREEAVSENIFRSV 354
            LPH+ ++ QL K+FFCFPDPHFK +NHRRRI+   LL EYA+ L PGG LY ITDVE+LH WHV+K  AHPCF  +P EE  S+   +++
Sbjct:  125 LPHYFKKGQLSKLFFCFPDPHFKLRNHRRRIVGTNLLAEYAYLLAPGGILYTITDVEDLHNWHVEKCTAHPCFVRIPDEELASDPCVKAM 214
[Close]
BLAST of mRNA_H-elongata_contig79152.15575.1 vs. uniprot
Match: A0A7S2DPQ4_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DPQ4_9STRA)

HSP 1 Score: 125 bits (314), Expect = 5.490e-34
Identity = 54/90 (60.00%), Postives = 69/90 (76.67%), Query Frame = 1 
Query:   85 LPHFLERHQLEKMFFCFPDPHFKAKNHRRRIISVPLLTEYAFFLRPGGRLYMITDVEELHRWHVQKADAHPCFRSVPREEAVSENIFRSV 354
            LP+F  R QL K+FFCFPDPHFKAKNHRRRI+S  LL+EYA+ L+ GGRLY+ITDVE+LH+WHV KA AHP F  +  E+   +   +++
Sbjct:   64 LPNFFRRGQLSKIFFCFPDPHFKAKNHRRRIVSETLLSEYAYALKEGGRLYVITDVEDLHQWHVSKATAHPMFEELSAEDLEKDQAAQAM 153
[Close]
BLAST of mRNA_H-elongata_contig79152.15575.1 vs. uniprot
Match: A0A662XS10_9STRA (tRNA (guanine-N(7)-)-methyltransferase n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XS10_9STRA)

HSP 1 Score: 127 bits (318), Expect = 9.060e-34
Identity = 56/99 (56.57%), Postives = 70/99 (70.71%), Query Frame = 1 
Query:   34 FDSVPNVLNHVLQRRQLLPHFLERHQLEKMFFCFPDPHFKAKNHRRRIISVPLLTEYAFFLRPGGRLYMITDVEELHRWHVQKADAHPCFRSVPREEAV 330
            F +V  +  + ++    LPH+L + QL KMFFCFPDP FKA+ HRRRI+  PLL EYA+ L PGG LY ITDVEELH+WHV K  +HPCF  +P +E V
Sbjct:  101 FQNVSTLRTNAMR---YLPHYLGKGQLSKMFFCFPDPQFKARLHRRRIVHTPLLAEYAYLLAPGGILYTITDVEELHQWHVAKCSSHPCFERIPDDELV 196
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BLAST of mRNA_H-elongata_contig79152.15575.1 vs. uniprot
Match: W2HNP0_PHYPR (tRNA (guanine-N(7)-)-methyltransferase n=18 Tax=Phytophthora parasitica TaxID=4792 RepID=W2HNP0_PHYPR)

HSP 1 Score: 125 bits (315), Expect = 1.610e-33
Identity = 52/90 (57.78%), Postives = 66/90 (73.33%), Query Frame = 1 
Query:   85 LPHFLERHQLEKMFFCFPDPHFKAKNHRRRIISVPLLTEYAFFLRPGGRLYMITDVEELHRWHVQKADAHPCFRSVPREEAVSENIFRSV 354
            LPH+  + Q+ KMFFCFPDP FKA+ HRRRI+  PLL EYA+ L PGG LY ITDVEELH+WHV+K  +HPCF  +P  E  S+   +++
Sbjct:  117 LPHYFRKGQITKMFFCFPDPQFKARLHRRRIVHTPLLAEYAYLLAPGGILYTITDVEELHQWHVEKCSSHPCFTRIPDSELESDPCVKAM 206
[Close]
BLAST of mRNA_H-elongata_contig79152.15575.1 vs. uniprot
Match: A0A2D4BEJ3_PYTIN (tRNA (guanine-N(7)-)-methyltransferase n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BEJ3_PYTIN)

HSP 1 Score: 125 bits (315), Expect = 1.910e-33
Identity = 51/90 (56.67%), Postives = 67/90 (74.44%), Query Frame = 1 
Query:   85 LPHFLERHQLEKMFFCFPDPHFKAKNHRRRIISVPLLTEYAFFLRPGGRLYMITDVEELHRWHVQKADAHPCFRSVPREEAVSENIFRSV 354
            LPH+ ++ QL KMFFCFPDPHFK +NHRRRI++  LL EYA+ L+ GG LY ITDVE+LH WHV+K   HPCF  +P EE  ++   +++
Sbjct:  124 LPHYFKKGQLSKMFFCFPDPHFKLRNHRRRIVNTNLLDEYAYLLKAGGILYTITDVEDLHNWHVEKCTNHPCFERIPDEELANDPCVKAM 213
[Close]
BLAST of mRNA_H-elongata_contig79152.15575.1 vs. uniprot
Match: H3G8D5_PHYRM (tRNA (guanine-N(7)-)-methyltransferase n=20 Tax=Phytophthora TaxID=4783 RepID=H3G8D5_PHYRM)

HSP 1 Score: 125 bits (315), Expect = 2.160e-33
Identity = 53/90 (58.89%), Postives = 66/90 (73.33%), Query Frame = 1 
Query:   85 LPHFLERHQLEKMFFCFPDPHFKAKNHRRRIISVPLLTEYAFFLRPGGRLYMITDVEELHRWHVQKADAHPCFRSVPREEAVSENIFRSV 354
            LPH+  + Q+ KMFFCFPDP FKA+ HRRRI+  PLLTEYA+ L PGG LY ITDVEELH WHV+K  +HPCF  +P  E  S+   +++
Sbjct:  129 LPHYFRKGQITKMFFCFPDPQFKARLHRRRIVHTPLLTEYAYLLAPGGILYTITDVEELHEWHVEKCSSHPCFTRIPDCELESDPCVKAM 218
[Close]
BLAST of mRNA_H-elongata_contig79152.15575.1 vs. uniprot
Match: A0A7S2DPP9_9STRA (tRNA (guanine-N(7)-)-methyltransferase n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DPP9_9STRA)

HSP 1 Score: 125 bits (314), Expect = 3.040e-33
Identity = 54/90 (60.00%), Postives = 69/90 (76.67%), Query Frame = 1 
Query:   85 LPHFLERHQLEKMFFCFPDPHFKAKNHRRRIISVPLLTEYAFFLRPGGRLYMITDVEELHRWHVQKADAHPCFRSVPREEAVSENIFRSV 354
            LP+F  R QL K+FFCFPDPHFKAKNHRRRI+S  LL+EYA+ L+ GGRLY+ITDVE+LH+WHV KA AHP F  +  E+   +   +++
Sbjct:  130 LPNFFRRGQLSKIFFCFPDPHFKAKNHRRRIVSETLLSEYAYALKEGGRLYVITDVEDLHQWHVSKATAHPMFEELSAEDLEKDQAAQAM 219
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig79152.15575.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQW1_ECTSI1.720e-4981.32tRNA (guanine-N(7)-)-methyltransferase n=1 Tax=Ect... [more]
A0A7S4DB82_HETAK8.610e-3860.87Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A7S3HPW2_9STRA1.030e-3767.06tRNA (guanine-N(7)-)-methyltransferase n=1 Tax=Spu... [more]
A0A8K1C687_PYTOL1.230e-3458.89Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7S2DPQ4_9STRA5.490e-3460.00Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A662XS10_9STRA9.060e-3456.57tRNA (guanine-N(7)-)-methyltransferase n=1 Tax=Not... [more]
W2HNP0_PHYPR1.610e-3357.78tRNA (guanine-N(7)-)-methyltransferase n=18 Tax=Ph... [more]
A0A2D4BEJ3_PYTIN1.910e-3356.67tRNA (guanine-N(7)-)-methyltransferase n=1 Tax=Pyt... [more]
H3G8D5_PHYRM2.160e-3358.89tRNA (guanine-N(7)-)-methyltransferase n=20 Tax=Ph... [more]
A0A7S2DPP9_9STRA3.040e-3360.00tRNA (guanine-N(7)-)-methyltransferase n=1 Tax=Dic... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig79152contigH-elongata_contig79152:1933..2916 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score167.9
Seed ortholog evalue2.9e-39
Seed eggNOG ortholog2880.D8LQW1
Preferred nameTRM8
KEGG koko:K01669,ko:K03439,ko:K17887
GOsGO:0000049,GO:0001510,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008176,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016423,GO:0016740,GO:0016741,GO:0030488,GO:0031974,GO:0031981,GO:0032259,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0034708,GO:0036265,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043414,GO:0043527,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0090304,GO:0097159,GO:0106004,GO:0140098,GO:0140101,GO:1901360,GO:1901363,GO:1902494,GO:1990234
EggNOG free text desc.tRNA (guanine-N7-)-methyltransferase activity
EggNOG OGsCOG0220@1,KOG3115@2759
EC2.1.1.33,4.1.99.3
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03016,ko03029,ko03400
Hectar predicted targeting categoryother localisation
Exons3
Model size363
Cds size363
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig79152.15575.1prot_H-elongata_contig79152.15575.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig79152 1933..2916 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931196.2051852-CDS-H-elongata_contig79152:1932..20481622931196.2051852-CDS-H-elongata_contig79152:1932..2048Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79152 1933..2048 -
1691679737.1522837-CDS-H-elongata_contig79152:1932..20481691679737.1522837-CDS-H-elongata_contig79152:1932..2048Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79152 1933..2048 -
1622931196.2254996-CDS-H-elongata_contig79152:2361..24261622931196.2254996-CDS-H-elongata_contig79152:2361..2426Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79152 2362..2426 -
1691679737.162679-CDS-H-elongata_contig79152:2361..24261691679737.162679-CDS-H-elongata_contig79152:2361..2426Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79152 2362..2426 -
1622931196.2455266-CDS-H-elongata_contig79152:2734..29161622931196.2455266-CDS-H-elongata_contig79152:2734..2916Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79152 2735..2916 -
1691679737.175505-CDS-H-elongata_contig79152:2734..29161691679737.175505-CDS-H-elongata_contig79152:2734..2916Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79152 2735..2916 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig79152.15575.1

>prot_H-elongata_contig79152.15575.1 ID=prot_H-elongata_contig79152.15575.1|Name=mRNA_H-elongata_contig79152.15575.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=121bp
SPTTRDPTRTRFDSVPNVLNHVLQRRQLLPHFLERHQLEKMFFCFPDPHF
KAKNHRRRIISVPLLTEYAFFLRPGGRLYMITDVEELHRWHVQKADAHPC
FRSVPREEAVSENIFRSVRS*
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mRNA from alignment at H-elongata_contig79152:1933..2916-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig79152.15575.1 ID=mRNA_H-elongata_contig79152.15575.1|Name=mRNA_H-elongata_contig79152.15575.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=984bp|location=Sequence derived from alignment at H-elongata_contig79152:1933..2916- (Himanthalia elongata Himel1 dioecious)
TCGCCGACCACGCGCGATCCAACTCGCACGCGTTTTGATTCCGTCCCGAA
TGTATTAAATCACGTGCTGCAACGGAGGCAGCTCTTGCCGCATTTCTTGG
AGAGACACCAGCTGGAAAAGATGTTTTTTTGCTTCCCGGATCCACACTTC
AAGGCCAAGAACCACCGCCGGAGGATCATTAGGTGTGTGTATTCTCACCG
CCGCCTTCATTAATCCGGGGGCGCTCCTCGTCGACCGAGGGATGCTTACA
CCGCCCCGTTCTCGACCCGACGAGCTTGGTTGATCGCTTCTCTCCACATC
CTGCTTCGGGGAGCTGAATCCAAGAATTAGCGTGGATGTCCTGCATCTCT
CCCCGAGAAGCTCGAAGAGTCTCGAAACCGGCTGGGTAGCAGGTTGAGGC
GCTTGCAATGCTTGACACGGTGTTCGCGCCTTTGTTCGCGTCGTGTCGTG
GCCTTCACATCTCTTCTCTCTCGATGTACCTCGCCACCAGCGTCCCCCTG
CTGACCGAGTATGCCTTTTTCCTGCGGCCGGGAGGGCGTCTGTACATGAT
CACAGGTACTGTAGCTGTACCAGTAGCAGGACTTTTAACAGGCTGTACAT
GTAAAGGATCACCACCGGGAATATACAGCACATACATTTGGCAGGACAGG
ATCCGGCCTTTTGAGGTGAAGCCTGGGCGTTTTTCTTTTAGCTTCCCTTC
GTTCGCGTTTGGGGGTCGTCAGGGCAGAAGGCAGCCAAGGCCACGGCGCT
TGCATTTTGCCTTTCGTCTCATCACTTCCCAACCCGATAAGCCACCGACA
ATGGGGCGCGACCCACGGACATGGCTGCTCTCCGGCATCCCTGTCGTTTG
GTTGGTTTCGTGTGGCAGACGTGGAGGAACTCCACAGGTGGCACGTGCAG
AAGGCGGATGCCCACCCGTGTTTCCGCTCCGTTCCGCGAGAAGAGGCGGT
GAGCGAAAACATCTTCCGTTCCGTTCGTTCTTGA
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Coding sequence (CDS) from alignment at H-elongata_contig79152:1933..2916-

>mRNA_H-elongata_contig79152.15575.1 ID=mRNA_H-elongata_contig79152.15575.1|Name=mRNA_H-elongata_contig79152.15575.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=726bp|location=Sequence derived from alignment at H-elongata_contig79152:1933..2916- (Himanthalia elongata Himel1 dioecious)
TCGCCGACCACGCGCGATCCAACTCGCACGCGTTTTGATTCCGTCCCGAA
TGTATTAAATCACGTGCTGCAACGGAGGCAGCTCTTGCCGCATTTCTTGG
AGAGACACCAGCTGGAAAAGATGTTTTTTTGCTTCCCGGATCCACACTTC
AAGGCCAAGAACCACCGCCGGAGGATCATTAGTCGCCGACCACGCGCGAT
CCAACTCGCACGCGTTTTGATTCCGTCCCGAATGTATTAAATCACGTGCT
GCAACGGAGGCAGCTCTTGCCGCATTTCTTGGAGAGACACCAGCTGGAAA
AGATGTTTTTTTGCTTCCCGGATCCACACTTCAAGGCCAAGAACCACCGC
CGGAGGATCATTAGCGTCCCCCTGCTGACCGAGTATGCCTTTTTCCTGCG
GCCGGGAGGGCGTCTGTACATGATCACAGCGTCCCCCTGCTGACCGAGTA
TGCCTTTTTCCTGCGGCCGGGAGGGCGTCTGTACATGATCACAGACGTGG
AGGAACTCCACAGGTGGCACGTGCAGAAGGCGGATGCCCACCCGTGTTTC
CGCTCCGTTCCGCGAGAAGAGGCGGTGAGCGAAAACATCTTCCGTTCCGT
TCGTTCTTGAACGTGGAGGAACTCCACAGGTGGCACGTGCAGAAGGCGGA
TGCCCACCCGTGTTTCCGCTCCGTTCCGCGAGAAGAGGCGGTGAGCGAAA
ACATCTTCCGTTCCGTTCGTTCTTGA
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