mRNA_H-elongata_contig7914.15572.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig7914.15572.1
Unique NamemRNA_H-elongata_contig7914.15572.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig7914.15572.1 vs. uniprot
Match: A0A6H5KZ26_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ26_9PHAE)

HSP 1 Score: 174 bits (442), Expect = 5.420e-50
Identity = 113/269 (42.01%), Postives = 142/269 (52.79%), Query Frame = 3
Query:    3 PSIDLRATVINSLDSDDETMMFDKDDDLYDSGMDENDARWVRKQHRPAAEYDGEPSAKGLESDHRPLDGDNSRNIRILPEVTENVDVHGD----------------DG-----GHRQQEKGKSKGKGKVVDDLGVESDAQLSCPLCFTTVCLECQRHVRYHNQFRAVTGINVTVKGNESLTFEDISGEGGKRSKRNGAGGRNXXXXXXXXGQGEXXG----------DREGG-----LFHSVCCAECDHRVGVLDEEDVFHFFGVIAMG 701
            P   L       LDSDDET+ FDKDDDLY   +DE DARWVRKQH PA E + E        D  P  G  ++ I     + ++ ++H D                DG       ++Q+ G S  + +    +GV SDAQLSCPLCFTTVCLECQRH +Y+NQFRAVTGINV +  +  LT +D+S EGG   ++    G           +    G          D EGG     +FH V C ECDHRVGV D ++VFHFFGV+A G
Sbjct:    9 PGTPLHEDPSGGLDSDDETLRFDKDDDLYAEDLDEEDARWVRKQHLPATECEAEAE------DGNPPAGVKNK-IGKGEAINDDKEIHEDEIAEDQPPTISDSDIGDGRPXXXAQKRQQGGSSNNQRRA---MGVASDAQLSCPLCFTTVCLECQRHAKYYNQFRAVTGINVNINYDVFLTLDDVS-EGGSVQRKGRRKGHGKTPAVASVPRDSGGGVDRQNQTAQVDAEGGEEEQEMFHPVSCGECDHRVGVYDVDEVFHFFGVVASG 266          
BLAST of mRNA_H-elongata_contig7914.15572.1 vs. uniprot
Match: D8LQE6_ECTSI (E2f-associated phosphoprotein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQE6_ECTSI)

HSP 1 Score: 159 bits (401), Expect = 7.520e-44
Identity = 110/272 (40.44%), Postives = 130/272 (47.79%), Query Frame = 3
Query:    3 PSIDLRATVINSLDSDDETMMFDKDDDLYDSGMDENDARWVRKQHRPAAEY----DGEP--SAKGLESDHRPLDGDNSRNIRIL----PEVTENVDVHGDDGGHRQ--QEKGKSKGKGKVVDDLGVESDAQLSCPLCFTTVCLECQRHVRYHNQFRAVTGINVTVKGNESLTFEDISGEGGKR---------------------------SKRNGAGGRNXXXXXXXXGQGEXXGDREGGLFHSVCCAECDHRVGVLDEEDVFHFFGVIAMG 701
            P   L       LDSDDET+ FDKDDDLY   +DE DARWVRKQH PA E     DG P    K        ++GD   +   +    P    + D+   DGG     Q              +GV SDAQLSCPLCFTTVCLECQRH +Y+NQFRAVTGINV +  +  LT +D+SG                                 +RN                GE   + E   FH V C ECDHRVGV D ++VFHFFGV+A G
Sbjct:    9 PGTRLHENPSGGLDSDDETLRFDKDDDLYAEDLDEEDARWVRKQHLPATECEEAEDGNPPTGVKNKIGKGEAINGDKEIDEDEIAEDQPPTISDSDIG--DGGPPAGAQXXXXXXSSNNQRGPMGVASDAQLSCPLCFTTVCLECQRHAKYYNQFRAVTGINVNINYDVFLTLDDVSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLDRRN----------QSAQVDGEDR-EEEQETFHPVSCGECDHRVGVYDVDEVFHFFGVVASG 267          
BLAST of mRNA_H-elongata_contig7914.15572.1 vs. uniprot
Match: A0A0E0K2R9_ORYPU (Uncharacterized protein n=1 Tax=Oryza punctata TaxID=4537 RepID=A0A0E0K2R9_ORYPU)

HSP 1 Score: 94.4 bits (233), Expect = 9.030e-20
Identity = 52/119 (43.70%), Postives = 66/119 (55.46%), Query Frame = 3
Query:  339 GVESDAQLSCPLCFTTVCLECQRHVRYHNQFRAVTGINVTVKGNESLTFEDISGEG-GKRSKRNGAGGRNXXXXXXXXGQGEXXGDREGGLFHSVCCAECDHRVGVLDEEDVFHFFGVI 692
            G  SDA LSCP CFTT+CL+CQRH  Y NQ+RA+   N  VK ++ L       EG GKR  R G                   G+++G ++H VCC  C   VGV DE++V+HFF VI
Sbjct:   96 GRSSDAVLSCPACFTTLCLDCQRHETYVNQYRAMFVRNCKVKTDQILR------EGKGKRKNRKGK---------AADSSATSEGEKKGAVYHPVCCEVCSTEVGVFDEDEVYHFFNVI 199          
BLAST of mRNA_H-elongata_contig7914.15572.1 vs. uniprot
Match: B8AFT3_ORYSI (Uncharacterized protein n=7 Tax=Oryzinae TaxID=1648021 RepID=B8AFT3_ORYSI)

HSP 1 Score: 93.2 bits (230), Expect = 1.070e-19
Identity = 52/119 (43.70%), Postives = 66/119 (55.46%), Query Frame = 3
Query:  339 GVESDAQLSCPLCFTTVCLECQRHVRYHNQFRAVTGINVTVKGNESLTFEDISGEG-GKRSKRNGAGGRNXXXXXXXXGQGEXXGDREGGLFHSVCCAECDHRVGVLDEEDVFHFFGVI 692
            G  SDA LSCP CFTT+CL+CQRH  Y NQ+RA+   N  VK ++ L       EG GKR  R G                   G+++G ++H VCC  C   VGV DE++V+HFF VI
Sbjct:   61 GRTSDAVLSCPACFTTLCLDCQRHETYVNQYRAMFVRNCKVKTDQILR------EGKGKRKNRKGK---------AADSSTTSEGEKKGAVYHPVCCEVCSTEVGVFDEDEVYHFFNVI 164          
BLAST of mRNA_H-elongata_contig7914.15572.1 vs. uniprot
Match: UPI0007EF7A7E (E2F-associated phosphoprotein n=1 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=UPI0007EF7A7E)

HSP 1 Score: 92.8 bits (229), Expect = 1.160e-19
Identity = 50/118 (42.37%), Postives = 63/118 (53.39%), Query Frame = 3
Query:  339 GVESDAQLSCPLCFTTVCLECQRHVRYHNQFRAVTGINVTVKGNESLTFEDISGEGGKRSKRNGAGGRNXXXXXXXXGQGEXXGDREGGLFHSVCCAECDHRVGVLDEEDVFHFFGVI 692
            G  SDA LSCP CF+T+CLECQRH +Y  Q+RAV   N  +K N+ +    I  + GKR K                G  E      G  F  VCC+ C   VGV+DEE+V+HFF V+
Sbjct:   54 GQYSDAVLSCPACFSTLCLECQRHEKYVTQYRAVFVTNCKIK-NDLVAQPGIKRKRGKRGK----------------GSSETDAGSAGETFKQVCCSTCSTEVGVIDEEEVYHFFNVL 154          
BLAST of mRNA_H-elongata_contig7914.15572.1 vs. uniprot
Match: A0A833V3H2_9POAL (E2F-associated phosphoprotein n=1 Tax=Carex littledalei TaxID=544730 RepID=A0A833V3H2_9POAL)

HSP 1 Score: 92.8 bits (229), Expect = 1.530e-19
Identity = 54/129 (41.86%), Postives = 72/129 (55.81%), Query Frame = 3
Query:  327 VDDLGVE-------SDAQLSCPLCFTTVCLECQRHVRYHNQFRAVTGINVTVKGNESLTFEDISGEGGKRSKRNGAGGRNXXXXXXXXGQGEXXGDREGGLFHSVCCAECDHRVGVLDEEDVFHFFGVI 692
            VD+L V        SDA LSCP CFTT+CL+ QRH +Y  Q+RA+   N TV+ ++ L      G+  K+SKR     +         G  E   D +G ++  VCC+ C   VGVLDEE+V+HFF VI
Sbjct:   46 VDELWVNKQRKSRSSDAVLSCPACFTTLCLDSQRHEKYVTQYRAMFVRNCTVRTDQILR----EGKQQKKSKR-----KRKTNAGPDLGSSEPKDDAQGLIYRPVCCSVCSTEVGVLDEEEVYHFFNVI 165          
BLAST of mRNA_H-elongata_contig7914.15572.1 vs. uniprot
Match: A0A1R3KG29_COCAP (E2F-associated phosphoprotein n=2 Tax=Corchorus TaxID=93758 RepID=A0A1R3KG29_COCAP)

HSP 1 Score: 92.8 bits (229), Expect = 1.610e-19
Identity = 50/129 (38.76%), Postives = 70/129 (54.26%), Query Frame = 3
Query:  306 SKGKGKVVDDLGVESDAQLSCPLCFTTVCLECQRHVRYHNQFRAVTGINVTVKGNESLTFEDISGEGGKRSKRNGAGGRNXXXXXXXXGQGEXXGDREGGLFHSVCCAECDHRVGVLDEEDVFHFFGVI 692
            +K KG++       SDA LSCP CFTT+CLECQRH +Y  Q+RA+  +N  +  NE++  E +    GKR +                 +    G   G  F SVCC+ C   VGV+DE++V+HFF V+
Sbjct:   62 NKRKGRI-------SDAVLSCPACFTTLCLECQRHEKYLTQYRAIFVVNCKID-NENVRQERVKSNKGKRRRET---------------KDNEAGAAGGETFKSVCCSVCSTEVGVIDEDEVYHFFNVL 167          
BLAST of mRNA_H-elongata_contig7914.15572.1 vs. uniprot
Match: A0A175YPP2_DAUCS (Uncharacterized protein n=1 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=A0A175YPP2_DAUCS)

HSP 1 Score: 92.8 bits (229), Expect = 1.950e-19
Identity = 50/118 (42.37%), Postives = 63/118 (53.39%), Query Frame = 3
Query:  339 GVESDAQLSCPLCFTTVCLECQRHVRYHNQFRAVTGINVTVKGNESLTFEDISGEGGKRSKRNGAGGRNXXXXXXXXGQGEXXGDREGGLFHSVCCAECDHRVGVLDEEDVFHFFGVI 692
            G  SDA LSCP CF+T+CLECQRH +Y  Q+RAV   N  +K N+ +    I  + GKR K                G  E      G  F  VCC+ C   VGV+DEE+V+HFF V+
Sbjct:   52 GQYSDAVLSCPACFSTLCLECQRHEKYVTQYRAVFVTNCKIK-NDLVAQPGIKRKRGKRGK----------------GSSETDAGSAGETFKQVCCSTCSTEVGVIDEEEVYHFFNVL 152          
BLAST of mRNA_H-elongata_contig7914.15572.1 vs. uniprot
Match: W1PMW7_AMBTC (Uncharacterized protein n=3 Tax=Amborella trichopoda TaxID=13333 RepID=W1PMW7_AMBTC)

HSP 1 Score: 91.7 bits (226), Expect = 2.580e-19
Identity = 49/120 (40.83%), Postives = 68/120 (56.67%), Query Frame = 3
Query:  339 GVESDAQLSCPLCFTTVCLECQRHVRYHNQFRAVTGINVTVKGNESLTFEDISGEGGKRSKRNGAGGRNXXXXXXXXGQGEXX-GDREGGLFHSVCCAECDHRVGVLDEEDVFHFFGVIA 695
            G  SDA LSCP CFTT+CL+CQRH RY  Q+RA+   N T+K N+ L    +S     ++K     G+N          GE    D E  +F  VCC+ C   V V+D+++V+HFF ++A
Sbjct:   37 GRVSDAVLSCPACFTTLCLDCQRHERYLTQYRAMFVRNCTIKTNQILHSPSVSKRKQAKAKEKIKDGKN---------SGEPSENDEEDEIFRPVCCSICKTEVAVMDKDEVYHFFNILA 147          
BLAST of mRNA_H-elongata_contig7914.15572.1 vs. uniprot
Match: A0A834YN18_9MAGN (Uncharacterized protein n=1 Tax=Tetracentron sinense TaxID=13715 RepID=A0A834YN18_9MAGN)

HSP 1 Score: 92.0 bits (227), Expect = 3.810e-19
Identity = 48/119 (40.34%), Postives = 65/119 (54.62%), Query Frame = 3
Query:  339 GVESDAQLSCPLCFTTVCLECQRHVRYHNQFRAVTGINVTVKGNESLTFEDISGEGGKRSKRNGAGGRNXXXXXXXXGQGEXXGDREGG-LFHSVCCAECDHRVGVLDEEDVFHFFGVI 692
            G  SDA LSCP CFT++CLECQRH +Y  Q+RA+  +N  VK  + L   +     GKR + +                GE     EGG  F  VCC+ C   VG++DE++V+HFF V+
Sbjct:   73 GHTSDAVLSCPACFTSLCLECQRHEKYVTQYRAIFVVNCKVKSEKVLRQRNQKPRKGKRGRDS----------------GESEAGPEGGETFRPVCCSVCSTEVGIIDEDEVYHFFNVL 175          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7914.15572.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KZ26_9PHAE5.420e-5042.01Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LQE6_ECTSI7.520e-4440.44E2f-associated phosphoprotein n=1 Tax=Ectocarpus s... [more]
A0A0E0K2R9_ORYPU9.030e-2043.70Uncharacterized protein n=1 Tax=Oryza punctata Tax... [more]
B8AFT3_ORYSI1.070e-1943.70Uncharacterized protein n=7 Tax=Oryzinae TaxID=164... [more]
UPI0007EF7A7E1.160e-1942.37E2F-associated phosphoprotein n=1 Tax=Daucus carot... [more]
A0A833V3H2_9POAL1.530e-1941.86E2F-associated phosphoprotein n=1 Tax=Carex little... [more]
A0A1R3KG29_COCAP1.610e-1938.76E2F-associated phosphoprotein n=2 Tax=Corchorus Ta... [more]
A0A175YPP2_DAUCS1.950e-1942.37Uncharacterized protein n=1 Tax=Daucus carota subs... [more]
W1PMW7_AMBTC2.580e-1940.83Uncharacterized protein n=3 Tax=Amborella trichopo... [more]
A0A834YN18_9MAGN3.810e-1940.34Uncharacterized protein n=1 Tax=Tetracentron sinen... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig7914contigH-elongata_contig7914:7544..9888 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score149.1
Seed ortholog evalue2.4e-33
Seed eggNOG ortholog2880.D8LQE6
Preferred nameEAPP
GOsGO:0000122,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006355,GO:0006357,GO:0008150,GO:0008284,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0019219,GO:0019222,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0032784,GO:0032785,GO:0032786,GO:0032968,GO:0034243,GO:0034244,GO:0042127,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0045944,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051173,GO:0051252,GO:0051253,GO:0051254,GO:0060255,GO:0065007,GO:0080090,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.negative regulation of transcription elongation from RNA polymerase II promoter
EggNOG OGsKOG3395@1,KOG3395@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionE2F-associated phosphoprotein
Ec32 orthologEc-10_005350.1
Exons3
Model size828
Cds size645
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig7914.15572.1prot_H-elongata_contig7914.15572.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig7914 7603..9764 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931195.8791127-UTR-H-elongata_contig7914:7543..76021622931195.8791127-UTR-H-elongata_contig7914:7543..7602Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7914 7544..7602 +
1691679737.0389154-UTR-H-elongata_contig7914:7543..76021691679737.0389154-UTR-H-elongata_contig7914:7543..7602Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7914 7544..7602 +
1622931195.961708-UTR-H-elongata_contig7914:9764..98881622931195.961708-UTR-H-elongata_contig7914:9764..9888Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7914 9765..9888 +
1691679737.075216-UTR-H-elongata_contig7914:9764..98881691679737.075216-UTR-H-elongata_contig7914:9764..9888Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7914 9765..9888 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931195.9017727-CDS-H-elongata_contig7914:7602..76771622931195.9017727-CDS-H-elongata_contig7914:7602..7677Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7914 7603..7677 +
1691679737.0490246-CDS-H-elongata_contig7914:7602..76771691679737.0490246-CDS-H-elongata_contig7914:7602..7677Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7914 7603..7677 +
1622931195.919014-CDS-H-elongata_contig7914:8969..92631622931195.919014-CDS-H-elongata_contig7914:8969..9263Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7914 8970..9263 +
1691679737.0598598-CDS-H-elongata_contig7914:8969..92631691679737.0598598-CDS-H-elongata_contig7914:8969..9263Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7914 8970..9263 +
1622931195.941715-CDS-H-elongata_contig7914:9488..97641622931195.941715-CDS-H-elongata_contig7914:9488..9764Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7914 9489..9764 +
1691679737.0675583-CDS-H-elongata_contig7914:9488..97641691679737.0675583-CDS-H-elongata_contig7914:9488..9764Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7914 9489..9764 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig7914.15572.1

>prot_H-elongata_contig7914.15572.1 ID=prot_H-elongata_contig7914.15572.1|Name=mRNA_H-elongata_contig7914.15572.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=215bp
MMFDKDDDLYDSGMDENDARWVRKQHRPAAEYDGEPSAKGLESDHRPLDG
DNSRNIRILPEVTENVDVHGDDGGHRQQEKGKSKGKGKVVDDLGVESDAQ
LSCPLCFTTVCLECQRHVRYHNQFRAVTGINVTVKGNESLTFEDISGEGG
KRSKRNGAGGRNGGRRQQSAGQGEGGGDREGGLFHSVCCAECDHRVGVLD
EEDVFHFFGVIAMG*
back to top

mRNA from alignment at H-elongata_contig7914:7544..9888+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig7914.15572.1 ID=mRNA_H-elongata_contig7914.15572.1|Name=mRNA_H-elongata_contig7914.15572.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2345bp|location=Sequence derived from alignment at H-elongata_contig7914:7544..9888+ (Himanthalia elongata Himel1 dioecious)
AGCCCAGCATCGACCTGCGGGCTACAGTTATTAATAGTCTGGATAGCGAT GATGAAACTATGATGTTTGACAAGGACGACGACCTTTATGACAGCGGAAT GGACGAGAATGATGCACGATGGGTCAGGAAACAGGTACATCACTTATCTC TGTCGGCGATTAGCACTCAAGCATAATGTGGTGACCTTACTGGACGAGTC TTACTCCATATGTTCTTCCCTCCATGTTGCCTCGCAGCTCCCTGGAGTTT CATATCGGTGGGACGAAGAGTACCCAAACTGTCTTGAGTACGTGTATTTT TGGTGTCGTATGTACCCCGTTCAGCAGATCACAGCCGGGAGACTAGCTAC CGCGCACAGCAAGTAGCTTGGGTTAGCGAACACTGCGCTGGAAAGCAGAA GGAACAACCACACCAGTAACAATTACCATGAACGCTTGTAGTGATCCTTG GATTTGTTTTAAGCCAAATACGTTTGATCCATCGTTCCACTTGCAACCGT CATACACACTCTTCCCATAGTGTGGGAAAATAGAGGCGTACATTACTTGG TCCATGGGGTCACCTGAAAAGGCTGCACCTGCTACTCAATTTATCTTGAG GACGACTGGCTCAGGGCCGGCGGGCTCTCGGTAGTTATTGGTCTCACTTT TAGCAGAAGAATCAACCGGATTTGGTTGCCTTCTTCTCGTGGTCAGCTGA ACCGGGAAAATAATTTTCCCCTGTCCCCGTTCGCGCCTGAGAATGAGACG GGTTCAGCACTCCCTTCCCGCGTCAGCCCGTTCTCTCAACCCAGGCTGGA TCTGATGCTTACTCCCGGGATCCTCTTGATCCTCCCAGTTTCCGTGGCGG CGTCCATCTCGTAAATGCTATCGGTACGCAATTGCGTGACCTGATGAAAT CGGTATTGACTCGATGGCAATTGACGGTAGAGATGGACGCCGTCGCGGAA AACGGGATGGTTGAGAGGATCCCGAGAGTAAGCACCAGATTCAGCATGGG TTGAGAGAATGAACAGGCTGACGCGGGACGGGGCTGTTGAACCCGTCTCG CGAAGCCAAAATCTCAGGCGCGAACGGGGACAGACAAAGTTATTTTCCCT GTTCAGCTGACCACGAGCAGAAGGAAACCAAATCCGGTTGATCCTTCTGC TCAATGTGCAACCATCACTAATATTATTAGTAGCGCTATCCTTAAGGAAG AGTCCCCCTATATTCGTTTTCCGTGGAATAATGAAGGATAGAAGCCCGGG GATTGGGTAGCAGGGAATCTCCCACCAAATTACACCTGTAAAAGCTTCGA TCCACAATCTACGTTAGATGACTCTCCTAGTATCGCGTATTTTCCATGTT GCACGATCAGCTCACTCGACCGCCCGCGCCTGCGTGCGTGTTTGTGGCAC CGCTTCGCCGGATTTTTCTCGCGCAGCATCGGCCTGCGGCTGAGTACGAC GGCGAGCCTTCTGCGAAGGGACTCGAGAGCGACCATCGTCCCCTAGACGG CGATAACAGCCGCAACATCAGGATATTGCCCGAAGTCACTGAAAACGTGG ACGTGCACGGCGACGATGGAGGGCATCGCCAACAGGAAAAAGGCAAGAGC AAGGGCAAAGGCAAGGTCGTCGACGATTTGGGCGTCGAGAGTGACGCACA GCTCAGCTGCCCGCTCTGCTTCACGACCGTATGTCTGGAGTGCCAGCGGC ACGTACGTTATCACAACCAGGTAAACAGGCAGGGGGTGATAGGTGAGGGG GAGGGGGGGGTAGTTCTTCGAGTAACGAGCACTTTAATCTCAACTGTACT TGGGAGGACGGGGGTTCGGTTTAGCGATGAACTGCATTGCTGTTTTCGCC GTTGATCTTCAGGGGGCAATGTACATTTGTGTGCGAACCCAACATATCCA AGGCTCAGCTCACCCATGTCCCGCGTTACGTTTTTCTCTTTACAGTTTCG AGCTGTCACAGGAATCAACGTAACGGTGAAGGGAAACGAATCGCTAACGT TCGAAGACATTTCGGGGGAGGGGGGAAAGCGCTCGAAGAGGAACGGAGCT GGGGGACGGAATGGAGGAAGGCGGCAACAATCAGCAGGGCAAGGCGAGGG CGGCGGGGACAGAGAAGGGGGGCTATTCCACTCTGTTTGCTGCGCGGAGT GCGACCATCGAGTTGGCGTTTTGGACGAGGAGGATGTGTTCCATTTCTTC GGCGTTATCGCGATGGGATGAAACTAGCAAGTGCTTGAATACTTCAGATC GAAACCATATGTGTTCCTCTTTAGCGACGTTTAAGAAGCATCGATTTCCA CGCGATTTCGTGGCGAGGAGTCGAAAGCTCCATCGGATTGTGGTG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig7914:7544..9888+

>mRNA_H-elongata_contig7914.15572.1 ID=mRNA_H-elongata_contig7914.15572.1|Name=mRNA_H-elongata_contig7914.15572.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1290bp|location=Sequence derived from alignment at H-elongata_contig7914:7544..9888+ (Himanthalia elongata Himel1 dioecious)
ATGATGTTTGACAAGGACGACGACCTTTATGACAGCGGAATGGACGAGAA
TGATGCACGATGGGTCAGGAAACAGATGATGTTTGACAAGGACGACGACC
TTTATGACAGCGGAATGGACGAGAATGATGCACGATGGGTCAGGAAACAG
CATCGGCCTGCGGCTGAGTACGACGGCGAGCCTTCTGCGAAGGGACTCGA
GAGCGACCATCGTCCCCTAGACGGCGATAACAGCCGCAACATCAGGATAT
TGCCCGAAGTCACTGAAAACGTGGACGTGCACGGCGACGATGGAGGGCAT
CGCCAACAGGAAAAAGGCAAGAGCAAGGGCAAAGGCAAGGTCGTCGACGA
TTTGGGCGTCGAGAGTGACGCACAGCTCAGCTGCCCGCTCTGCTTCACGA
CCGTATGTCTGGAGTGCCAGCGGCACGTACGTTATCACAACCAGCATCGG
CCTGCGGCTGAGTACGACGGCGAGCCTTCTGCGAAGGGACTCGAGAGCGA
CCATCGTCCCCTAGACGGCGATAACAGCCGCAACATCAGGATATTGCCCG
AAGTCACTGAAAACGTGGACGTGCACGGCGACGATGGAGGGCATCGCCAA
CAGGAAAAAGGCAAGAGCAAGGGCAAAGGCAAGGTCGTCGACGATTTGGG
CGTCGAGAGTGACGCACAGCTCAGCTGCCCGCTCTGCTTCACGACCGTAT
GTCTGGAGTGCCAGCGGCACGTACGTTATCACAACCAGTTTCGAGCTGTC
ACAGGAATCAACGTAACGGTGAAGGGAAACGAATCGCTAACGTTCGAAGA
CATTTCGGGGGAGGGGGGAAAGCGCTCGAAGAGGAACGGAGCTGGGGGAC
GGAATGGAGGAAGGCGGCAACAATCAGCAGGGCAAGGCGAGGGCGGCGGG
GACAGAGAAGGGGGGCTATTCCACTCTGTTTGCTGCGCGGAGTGCGACCA
TCGAGTTGGCGTTTTGGACGAGGAGGATGTGTTCCATTTCTTCGGCGTTA
TCGCGATGGGATGATTTCGAGCTGTCACAGGAATCAACGTAACGGTGAAG
GGAAACGAATCGCTAACGTTCGAAGACATTTCGGGGGAGGGGGGAAAGCG
CTCGAAGAGGAACGGAGCTGGGGGACGGAATGGAGGAAGGCGGCAACAAT
CAGCAGGGCAAGGCGAGGGCGGCGGGGACAGAGAAGGGGGGCTATTCCAC
TCTGTTTGCTGCGCGGAGTGCGACCATCGAGTTGGCGTTTTGGACGAGGA
GGATGTGTTCCATTTCTTCGGCGTTATCGCGATGGGATGA
back to top