mRNA_H-elongata_contig7914.15572.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig7914.15572.1 vs. uniprot
Match: A0A6H5KZ26_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ26_9PHAE) HSP 1 Score: 174 bits (442), Expect = 5.420e-50 Identity = 113/269 (42.01%), Postives = 142/269 (52.79%), Query Frame = 3
Query: 3 PSIDLRATVINSLDSDDETMMFDKDDDLYDSGMDENDARWVRKQHRPAAEYDGEPSAKGLESDHRPLDGDNSRNIRILPEVTENVDVHGD----------------DG-----GHRQQEKGKSKGKGKVVDDLGVESDAQLSCPLCFTTVCLECQRHVRYHNQFRAVTGINVTVKGNESLTFEDISGEGGKRSKRNGAGGRNXXXXXXXXGQGEXXG----------DREGG-----LFHSVCCAECDHRVGVLDEEDVFHFFGVIAMG 701
P L LDSDDET+ FDKDDDLY +DE DARWVRKQH PA E + E D P G ++ I + ++ ++H D DG ++Q+ G S + + +GV SDAQLSCPLCFTTVCLECQRH +Y+NQFRAVTGINV + + LT +D+S EGG ++ G + G D EGG +FH V C ECDHRVGV D ++VFHFFGV+A G
Sbjct: 9 PGTPLHEDPSGGLDSDDETLRFDKDDDLYAEDLDEEDARWVRKQHLPATECEAEAE------DGNPPAGVKNK-IGKGEAINDDKEIHEDEIAEDQPPTISDSDIGDGRPXXXAQKRQQGGSSNNQRRA---MGVASDAQLSCPLCFTTVCLECQRHAKYYNQFRAVTGINVNINYDVFLTLDDVS-EGGSVQRKGRRKGHGKTPAVASVPRDSGGGVDRQNQTAQVDAEGGEEEQEMFHPVSCGECDHRVGVYDVDEVFHFFGVVASG 266
BLAST of mRNA_H-elongata_contig7914.15572.1 vs. uniprot
Match: D8LQE6_ECTSI (E2f-associated phosphoprotein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQE6_ECTSI) HSP 1 Score: 159 bits (401), Expect = 7.520e-44 Identity = 110/272 (40.44%), Postives = 130/272 (47.79%), Query Frame = 3
Query: 3 PSIDLRATVINSLDSDDETMMFDKDDDLYDSGMDENDARWVRKQHRPAAEY----DGEP--SAKGLESDHRPLDGDNSRNIRIL----PEVTENVDVHGDDGGHRQ--QEKGKSKGKGKVVDDLGVESDAQLSCPLCFTTVCLECQRHVRYHNQFRAVTGINVTVKGNESLTFEDISGEGGKR---------------------------SKRNGAGGRNXXXXXXXXGQGEXXGDREGGLFHSVCCAECDHRVGVLDEEDVFHFFGVIAMG 701
P L LDSDDET+ FDKDDDLY +DE DARWVRKQH PA E DG P K ++GD + + P + D+ DGG Q +GV SDAQLSCPLCFTTVCLECQRH +Y+NQFRAVTGINV + + LT +D+SG +RN GE + E FH V C ECDHRVGV D ++VFHFFGV+A G
Sbjct: 9 PGTRLHENPSGGLDSDDETLRFDKDDDLYAEDLDEEDARWVRKQHLPATECEEAEDGNPPTGVKNKIGKGEAINGDKEIDEDEIAEDQPPTISDSDIG--DGGPPAGAQXXXXXXSSNNQRGPMGVASDAQLSCPLCFTTVCLECQRHAKYYNQFRAVTGINVNINYDVFLTLDDVSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLDRRN----------QSAQVDGEDR-EEEQETFHPVSCGECDHRVGVYDVDEVFHFFGVVASG 267
BLAST of mRNA_H-elongata_contig7914.15572.1 vs. uniprot
Match: A0A0E0K2R9_ORYPU (Uncharacterized protein n=1 Tax=Oryza punctata TaxID=4537 RepID=A0A0E0K2R9_ORYPU) HSP 1 Score: 94.4 bits (233), Expect = 9.030e-20 Identity = 52/119 (43.70%), Postives = 66/119 (55.46%), Query Frame = 3
Query: 339 GVESDAQLSCPLCFTTVCLECQRHVRYHNQFRAVTGINVTVKGNESLTFEDISGEG-GKRSKRNGAGGRNXXXXXXXXGQGEXXGDREGGLFHSVCCAECDHRVGVLDEEDVFHFFGVI 692
G SDA LSCP CFTT+CL+CQRH Y NQ+RA+ N VK ++ L EG GKR R G G+++G ++H VCC C VGV DE++V+HFF VI
Sbjct: 96 GRSSDAVLSCPACFTTLCLDCQRHETYVNQYRAMFVRNCKVKTDQILR------EGKGKRKNRKGK---------AADSSATSEGEKKGAVYHPVCCEVCSTEVGVFDEDEVYHFFNVI 199
BLAST of mRNA_H-elongata_contig7914.15572.1 vs. uniprot
Match: B8AFT3_ORYSI (Uncharacterized protein n=7 Tax=Oryzinae TaxID=1648021 RepID=B8AFT3_ORYSI) HSP 1 Score: 93.2 bits (230), Expect = 1.070e-19 Identity = 52/119 (43.70%), Postives = 66/119 (55.46%), Query Frame = 3
Query: 339 GVESDAQLSCPLCFTTVCLECQRHVRYHNQFRAVTGINVTVKGNESLTFEDISGEG-GKRSKRNGAGGRNXXXXXXXXGQGEXXGDREGGLFHSVCCAECDHRVGVLDEEDVFHFFGVI 692
G SDA LSCP CFTT+CL+CQRH Y NQ+RA+ N VK ++ L EG GKR R G G+++G ++H VCC C VGV DE++V+HFF VI
Sbjct: 61 GRTSDAVLSCPACFTTLCLDCQRHETYVNQYRAMFVRNCKVKTDQILR------EGKGKRKNRKGK---------AADSSTTSEGEKKGAVYHPVCCEVCSTEVGVFDEDEVYHFFNVI 164
BLAST of mRNA_H-elongata_contig7914.15572.1 vs. uniprot
Match: UPI0007EF7A7E (E2F-associated phosphoprotein n=1 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=UPI0007EF7A7E) HSP 1 Score: 92.8 bits (229), Expect = 1.160e-19 Identity = 50/118 (42.37%), Postives = 63/118 (53.39%), Query Frame = 3
Query: 339 GVESDAQLSCPLCFTTVCLECQRHVRYHNQFRAVTGINVTVKGNESLTFEDISGEGGKRSKRNGAGGRNXXXXXXXXGQGEXXGDREGGLFHSVCCAECDHRVGVLDEEDVFHFFGVI 692
G SDA LSCP CF+T+CLECQRH +Y Q+RAV N +K N+ + I + GKR K G E G F VCC+ C VGV+DEE+V+HFF V+
Sbjct: 54 GQYSDAVLSCPACFSTLCLECQRHEKYVTQYRAVFVTNCKIK-NDLVAQPGIKRKRGKRGK----------------GSSETDAGSAGETFKQVCCSTCSTEVGVIDEEEVYHFFNVL 154
BLAST of mRNA_H-elongata_contig7914.15572.1 vs. uniprot
Match: A0A833V3H2_9POAL (E2F-associated phosphoprotein n=1 Tax=Carex littledalei TaxID=544730 RepID=A0A833V3H2_9POAL) HSP 1 Score: 92.8 bits (229), Expect = 1.530e-19 Identity = 54/129 (41.86%), Postives = 72/129 (55.81%), Query Frame = 3
Query: 327 VDDLGVE-------SDAQLSCPLCFTTVCLECQRHVRYHNQFRAVTGINVTVKGNESLTFEDISGEGGKRSKRNGAGGRNXXXXXXXXGQGEXXGDREGGLFHSVCCAECDHRVGVLDEEDVFHFFGVI 692
VD+L V SDA LSCP CFTT+CL+ QRH +Y Q+RA+ N TV+ ++ L G+ K+SKR + G E D +G ++ VCC+ C VGVLDEE+V+HFF VI
Sbjct: 46 VDELWVNKQRKSRSSDAVLSCPACFTTLCLDSQRHEKYVTQYRAMFVRNCTVRTDQILR----EGKQQKKSKR-----KRKTNAGPDLGSSEPKDDAQGLIYRPVCCSVCSTEVGVLDEEEVYHFFNVI 165
BLAST of mRNA_H-elongata_contig7914.15572.1 vs. uniprot
Match: A0A1R3KG29_COCAP (E2F-associated phosphoprotein n=2 Tax=Corchorus TaxID=93758 RepID=A0A1R3KG29_COCAP) HSP 1 Score: 92.8 bits (229), Expect = 1.610e-19 Identity = 50/129 (38.76%), Postives = 70/129 (54.26%), Query Frame = 3
Query: 306 SKGKGKVVDDLGVESDAQLSCPLCFTTVCLECQRHVRYHNQFRAVTGINVTVKGNESLTFEDISGEGGKRSKRNGAGGRNXXXXXXXXGQGEXXGDREGGLFHSVCCAECDHRVGVLDEEDVFHFFGVI 692
+K KG++ SDA LSCP CFTT+CLECQRH +Y Q+RA+ +N + NE++ E + GKR + + G G F SVCC+ C VGV+DE++V+HFF V+
Sbjct: 62 NKRKGRI-------SDAVLSCPACFTTLCLECQRHEKYLTQYRAIFVVNCKID-NENVRQERVKSNKGKRRRET---------------KDNEAGAAGGETFKSVCCSVCSTEVGVIDEDEVYHFFNVL 167
BLAST of mRNA_H-elongata_contig7914.15572.1 vs. uniprot
Match: A0A175YPP2_DAUCS (Uncharacterized protein n=1 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=A0A175YPP2_DAUCS) HSP 1 Score: 92.8 bits (229), Expect = 1.950e-19 Identity = 50/118 (42.37%), Postives = 63/118 (53.39%), Query Frame = 3
Query: 339 GVESDAQLSCPLCFTTVCLECQRHVRYHNQFRAVTGINVTVKGNESLTFEDISGEGGKRSKRNGAGGRNXXXXXXXXGQGEXXGDREGGLFHSVCCAECDHRVGVLDEEDVFHFFGVI 692
G SDA LSCP CF+T+CLECQRH +Y Q+RAV N +K N+ + I + GKR K G E G F VCC+ C VGV+DEE+V+HFF V+
Sbjct: 52 GQYSDAVLSCPACFSTLCLECQRHEKYVTQYRAVFVTNCKIK-NDLVAQPGIKRKRGKRGK----------------GSSETDAGSAGETFKQVCCSTCSTEVGVIDEEEVYHFFNVL 152
BLAST of mRNA_H-elongata_contig7914.15572.1 vs. uniprot
Match: W1PMW7_AMBTC (Uncharacterized protein n=3 Tax=Amborella trichopoda TaxID=13333 RepID=W1PMW7_AMBTC) HSP 1 Score: 91.7 bits (226), Expect = 2.580e-19 Identity = 49/120 (40.83%), Postives = 68/120 (56.67%), Query Frame = 3
Query: 339 GVESDAQLSCPLCFTTVCLECQRHVRYHNQFRAVTGINVTVKGNESLTFEDISGEGGKRSKRNGAGGRNXXXXXXXXGQGEXX-GDREGGLFHSVCCAECDHRVGVLDEEDVFHFFGVIA 695
G SDA LSCP CFTT+CL+CQRH RY Q+RA+ N T+K N+ L +S ++K G+N GE D E +F VCC+ C V V+D+++V+HFF ++A
Sbjct: 37 GRVSDAVLSCPACFTTLCLDCQRHERYLTQYRAMFVRNCTIKTNQILHSPSVSKRKQAKAKEKIKDGKN---------SGEPSENDEEDEIFRPVCCSICKTEVAVMDKDEVYHFFNILA 147
BLAST of mRNA_H-elongata_contig7914.15572.1 vs. uniprot
Match: A0A834YN18_9MAGN (Uncharacterized protein n=1 Tax=Tetracentron sinense TaxID=13715 RepID=A0A834YN18_9MAGN) HSP 1 Score: 92.0 bits (227), Expect = 3.810e-19 Identity = 48/119 (40.34%), Postives = 65/119 (54.62%), Query Frame = 3
Query: 339 GVESDAQLSCPLCFTTVCLECQRHVRYHNQFRAVTGINVTVKGNESLTFEDISGEGGKRSKRNGAGGRNXXXXXXXXGQGEXXGDREGG-LFHSVCCAECDHRVGVLDEEDVFHFFGVI 692
G SDA LSCP CFT++CLECQRH +Y Q+RA+ +N VK + L + GKR + + GE EGG F VCC+ C VG++DE++V+HFF V+
Sbjct: 73 GHTSDAVLSCPACFTSLCLECQRHEKYVTQYRAIFVVNCKVKSEKVLRQRNQKPRKGKRGRDS----------------GESEAGPEGGETFRPVCCSVCSTEVGIIDEDEVYHFFNVL 175 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7914.15572.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig7914.15572.1 >prot_H-elongata_contig7914.15572.1 ID=prot_H-elongata_contig7914.15572.1|Name=mRNA_H-elongata_contig7914.15572.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=215bp MMFDKDDDLYDSGMDENDARWVRKQHRPAAEYDGEPSAKGLESDHRPLDGback to top mRNA from alignment at H-elongata_contig7914:7544..9888+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig7914.15572.1 ID=mRNA_H-elongata_contig7914.15572.1|Name=mRNA_H-elongata_contig7914.15572.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2345bp|location=Sequence derived from alignment at H-elongata_contig7914:7544..9888+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig7914:7544..9888+ >mRNA_H-elongata_contig7914.15572.1 ID=mRNA_H-elongata_contig7914.15572.1|Name=mRNA_H-elongata_contig7914.15572.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1290bp|location=Sequence derived from alignment at H-elongata_contig7914:7544..9888+ (Himanthalia elongata Himel1 dioecious)back to top |