mRNA_H-elongata_contig79013.15564.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig79013.15564.1
Unique NamemRNA_H-elongata_contig79013.15564.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig79013.15564.1 vs. uniprot
Match: D7G8H7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8H7_ECTSI)

HSP 1 Score: 124 bits (311), Expect = 1.210e-33
Identity = 72/132 (54.55%), Postives = 91/132 (68.94%), Query Frame = 1 
Query:    4 QVLGTLLGTMFGFASAAIFTPARGEESTIGIPAAPGVVLGSSLGVLAAQFAGEESQTARQVLYKVVASIGAATATTVACAGLLGESELQEGGITGIVTLATVASLGSSAGLVCSRYHKGVLRGRISPVDDDR 399
            Q +GTLLGTMFGF SAA+ TP  G E   G+PAAPGV++GSSLGVLAA  AGE +Q  RQ+LY ++ S+GAA  TT AC+ L G+  LQ GG  GI+ LATVASLGS+A     +++  + R   +   DDR
Sbjct:   14 QAMGTLLGTMFGFVSAALLTPIDGGEREHGLPAAPGVIMGSSLGVLAAYSAGEGTQPLRQLLYLLLLSVGAAAVTTAACSWLTGDV-LQNGGSVGIMVLATVASLGSTAVFTIDKHNMLLTRAATAAAFDDR 144
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig79013.15564.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G8H7_ECTSI1.210e-3354.55Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig79013contigH-elongata_contig79013:923..2052 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-14_003080.1
Exons3
Model size399
Cds size369
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig79013.15564.1prot_H-elongata_contig79013.15564.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig79013 953..2052 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931194.6531081-UTR-H-elongata_contig79013:922..9521622931194.6531081-UTR-H-elongata_contig79013:922..952Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig79013 923..952 +
1691679736.6062672-UTR-H-elongata_contig79013:922..9521691679736.6062672-UTR-H-elongata_contig79013:922..952Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig79013 923..952 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931194.7062156-CDS-H-elongata_contig79013:952..10361622931194.7062156-CDS-H-elongata_contig79013:952..1036Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79013 953..1036 +
1691679736.6262834-CDS-H-elongata_contig79013:952..10361691679736.6262834-CDS-H-elongata_contig79013:952..1036Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79013 953..1036 +
1622931194.7269402-CDS-H-elongata_contig79013:1361..15201622931194.7269402-CDS-H-elongata_contig79013:1361..1520Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79013 1362..1520 +
1691679736.640233-CDS-H-elongata_contig79013:1361..15201691679736.640233-CDS-H-elongata_contig79013:1361..1520Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79013 1362..1520 +
1622931194.7489297-CDS-H-elongata_contig79013:1926..20521622931194.7489297-CDS-H-elongata_contig79013:1926..2052Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79013 1927..2052 +
1691679736.6507034-CDS-H-elongata_contig79013:1926..20521691679736.6507034-CDS-H-elongata_contig79013:1926..2052Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79013 1927..2052 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig79013.15564.1

>prot_H-elongata_contig79013.15564.1 ID=prot_H-elongata_contig79013.15564.1|Name=mRNA_H-elongata_contig79013.15564.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=123bp
MFGFASAAIFTPARGEESTIGIPAAPGVVLGSSLGVLAAQFAGEESQTAR
QVLYKVVASIGAATATTVACAGLLGESELQEGGITGIVTLATVASLGSSA
GLVCSRYHKGVLRGRISPVDDDR
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mRNA from alignment at H-elongata_contig79013:923..2052+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig79013.15564.1 ID=mRNA_H-elongata_contig79013.15564.1|Name=mRNA_H-elongata_contig79013.15564.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1130bp|location=Sequence derived from alignment at H-elongata_contig79013:923..2052+ (Himanthalia elongata Himel1 dioecious)
GTACAGGTACTCGGGACTCTGCTCGGAACAATGTTTGGCTTTGCATCCGC
TGCAATATTCACCCCTGCTCGCGGAGAGGAGAGCACCATTGGCATACCTG
CCGCACCGGGAGTGGTGAGACACCTTCCAACCCCCCCCTCCACATTTATT
GACTTGGTCAAACACGGGGGTTGGTCGAGATTTTCGTCGCAAGCACTTTT
TTGGGCGGGGGGGAATGGGAGGCGCCACCATATTTGTTCCGTGCTCAACC
GAGGCAACCCCCCCCCCCCCCTCTATCTCCCCCCCGGGGGTCGCTCGAAA
AGTTTAGCGCGACAGCAGGATAATTTGGTACTTTCAGGCCATTCGTGAGA
GCAAAGAATTTTACACGCTGTCATGCATCACCCCGTCCTTCATCGGAGCT
CCAGTACTGTACATCCATTGTACTCCACCGGATGCACAGGTGTTAGGGTC
TTCGCTAGGGGTGCTCGCGGCCCAATTCGCCGGAGAGGAAAGCCAAACCG
CGCGACAAGTACTCTACAAAGTGGTGGCCAGTATTGGGGCGGCTACGGCT
ACGACCGTAGCCTGTGCTGGTCTTTTGGGCGAAAGCGAACTGCAAGAGGT
AGGAGCGAGCGTCTCGCGGGGACTTGAGGCGCGAAGAGGGGAAAAAAAAC
TGTTTTCATTTCCTTCAAAATAAATAATAGTATAGTAGTGTGCCCGGATA
TCTTGGGTAGGCCAAAAGTGGTTTAATCTATTTTTTCCGCAAGCAGCTTC
TCCGTTCGAGGGATAAACGACAGACGTGTCGTTGCCCTACAGCTCTAGCT
CGAGAGCTGGTGCCAACCAAGGGCGACATATTTGTTACACATAGAACCCA
AAGTTTTAGAGCAGCAAGCTTTCGGCACCCCAAGCGAAATCATCAGCATC
CTCCCGTCGTGCAGCGGTGACTCCTATCTGGAGCACGGGTCGTGATAATC
CCTGCAGTGACGGACTTCTCTAAAAATTGTAACACGTGTTCGTGATCCTG
TCAGGGCGGGATAACCGGAATCGTCACATTGGCAACCGTGGCATCTTTGG
GCTCGTCGGCCGGTTTAGTGTGTAGTCGTTATCACAAGGGTGTGCTCAGA
GGCAGAATCTCCCCGGTCGATGATGATCGG
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Coding sequence (CDS) from alignment at H-elongata_contig79013:923..2052+

>mRNA_H-elongata_contig79013.15564.1 ID=mRNA_H-elongata_contig79013.15564.1|Name=mRNA_H-elongata_contig79013.15564.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=738bp|location=Sequence derived from alignment at H-elongata_contig79013:923..2052+ (Himanthalia elongata Himel1 dioecious)
ATGTTTGGCTTTGCATCCGCTGCAATATTCACCCCTGCTCGCGGAGAGGA
GAGCACCATTGGCATACCTGCCGCACCGGGAGTGATGTTTGGCTTTGCAT
CCGCTGCAATATTCACCCCTGCTCGCGGAGAGGAGAGCACCATTGGCATA
CCTGCCGCACCGGGAGTGGTGTTAGGGTCTTCGCTAGGGGTGCTCGCGGC
CCAATTCGCCGGAGAGGAAAGCCAAACCGCGCGACAAGTACTCTACAAAG
TGGTGGCCAGTATTGGGGCGGCTACGGCTACGACCGTAGCCTGTGCTGGT
CTTTTGGGCGAAAGCGAACTGCAAGAGGTGTTAGGGTCTTCGCTAGGGGT
GCTCGCGGCCCAATTCGCCGGAGAGGAAAGCCAAACCGCGCGACAAGTAC
TCTACAAAGTGGTGGCCAGTATTGGGGCGGCTACGGCTACGACCGTAGCC
TGTGCTGGTCTTTTGGGCGAAAGCGAACTGCAAGAGGGCGGGATAACCGG
AATCGTCACATTGGCAACCGTGGCATCTTTGGGCTCGTCGGCCGGTTTAG
TGTGTAGTCGTTATCACAAGGGTGTGCTCAGAGGCAGAATCTCCCCGGTC
GATGATGATCGGGGCGGGATAACCGGAATCGTCACATTGGCAACCGTGGC
ATCTTTGGGCTCGTCGGCCGGTTTAGTGTGTAGTCGTTATCACAAGGGTG
TGCTCAGAGGCAGAATCTCCCCGGTCGATGATGATCGG
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