mRNA_H-elongata_contig7899.15561.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig7899.15561.1
Unique NamemRNA_H-elongata_contig7899.15561.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig7899.15561.1 vs. uniprot
Match: A0A6H5JCQ1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCQ1_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 1.360e-10
Identity = 34/77 (44.16%), Postives = 47/77 (61.04%), Query Frame = -2 
Query:  282 YLDTLMKTG-RESIGTTIRRRRILFTRFVSRMNDTRLPKRVMFEEIMGGAGSTEAQEK*WMRCLLEDLKAFGINADQ 509
            Y   L++ G  E+I  T+R+RR+ F  FV RM D RLPKR++   + GG GS   QE  W+ CL EDL AF +  ++
Sbjct:  129 YAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDNRLPKRMLLGAMGGGVGSRGGQESDWVSCLGEDLVAFNMGDEK 205
[Close]
BLAST of mRNA_H-elongata_contig7899.15561.1 vs. uniprot
Match: A0A6H5KL86_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL86_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 8.010e-10
Identity = 33/75 (44.00%), Postives = 46/75 (61.33%), Query Frame = -2 
Query:  282 LDTLMKTGRESIGTTIRRRRILFTRFVSRMNDTRLPKRVMFEEIMGGAGSTEAQEK*WMRCLLEDLKAFGINADQ 506
            LD ++    E+I  T+R+RR+ F  FV RM D RLPKR++FE + GG G    QE  W+  L EDL AF +  ++
Sbjct:  198 LDFILMRCEETIEATVRKRRLCFAGFVIRMEDNRLPKRMLFEAMAGGGGYRGGQESDWVSRLGEDLVAFNMGDEK 272
[Close]
BLAST of mRNA_H-elongata_contig7899.15561.1 vs. uniprot
Match: A0A6H5KSH7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSH7_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 1.760e-9
Identity = 39/106 (36.79%), Postives = 56/106 (52.83%), Query Frame = -2 
Query:  207 YLDTLMKTG-RESIGTTIRRRRILFTRFVSRMNDTRLPKRVMFEEIMGGAGSTEAQEK*WMRCLLEDLKAFGINADQ*----TIAVQDERE*RKTAEQGTEHFMKK 509
            Y   L++ G  E+I  T+R+RR+ F  FV RM D RLPKR++   + GG G    QE  W+  L EDL AFG+  ++       + +D+       E G   FM+K
Sbjct:  152 YAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDNRLPKRMLLGAMAGGTGYRGGQESDWVYRLGEDLVAFGMKEEKEGGRWKESAKDQEAWYDKIEDGAAWFMRK 257
[Close]
BLAST of mRNA_H-elongata_contig7899.15561.1 vs. uniprot
Match: A0A6H5KB07_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB07_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 1.950e-9
Identity = 39/106 (36.79%), Postives = 56/106 (52.83%), Query Frame = -2 
Query:  207 YLDTLMKTG-RESIGTTIRRRRILFTRFVSRMNDTRLPKRVMFEEIMGGAGSTEAQEK*WMRCLLEDLKAFGINADQ*----TIAVQDERE*RKTAEQGTEHFMKK 509
            Y   L++ G  E+I  T+R+RR+ F  FV RM D RLPKR++   + GG G    QE  W+  L EDL AFG+  ++       + +D+       E G   FM+K
Sbjct:  182 YAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDNRLPKRMLLGAMAGGTGYRGGQESDWVYRLGEDLVAFGMKEEKEGGRWKESAKDQEAWYDKIEDGAAWFMRK 287
[Close]
BLAST of mRNA_H-elongata_contig7899.15561.1 vs. uniprot
Match: A0A6H5L5T8_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5T8_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 2.290e-9
Identity = 39/106 (36.79%), Postives = 56/106 (52.83%), Query Frame = -2 
Query:  207 YLDTLMKTG-RESIGTTIRRRRILFTRFVSRMNDTRLPKRVMFEEIMGGAGSTEAQEK*WMRCLLEDLKAFGINADQ*----TIAVQDERE*RKTAEQGTEHFMKK 509
            Y   L++ G  E+I  T+R+RR+ F  FV RM D RLPKR++   + GG G    QE  W+  L EDL AFG+  ++       + +D+       E G   FM+K
Sbjct:  272 YAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDNRLPKRMLLGAMAGGTGYRGGQESDWVYRLGEDLVAFGMKEEKEGGRWKESAKDQEAWYDKIEDGAAWFMRK 377
[Close]
BLAST of mRNA_H-elongata_contig7899.15561.1 vs. uniprot
Match: A0A6H5LD24_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LD24_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 2.400e-9
Identity = 39/106 (36.79%), Postives = 56/106 (52.83%), Query Frame = -2 
Query:  207 YLDTLMKTG-RESIGTTIRRRRILFTRFVSRMNDTRLPKRVMFEEIMGGAGSTEAQEK*WMRCLLEDLKAFGINADQ*----TIAVQDERE*RKTAEQGTEHFMKK 509
            Y   L++ G  E+I  T+R+RR+ F  FV RM D RLPKR++   + GG G    QE  W+  L EDL AFG+  ++       + +D+       E G   FM+K
Sbjct:  361 YAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDNRLPKRMLLGAMAGGTGYRGGQESDWVYRLGEDLVAFGMKEEKEGGRWKESAKDQEAWYDKIEDGAAWFMRK 466
[Close]
BLAST of mRNA_H-elongata_contig7899.15561.1 vs. uniprot
Match: A0A6H5JF72_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF72_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 2.500e-9
Identity = 39/106 (36.79%), Postives = 56/106 (52.83%), Query Frame = -2 
Query:  207 YLDTLMKTG-RESIGTTIRRRRILFTRFVSRMNDTRLPKRVMFEEIMGGAGSTEAQEK*WMRCLLEDLKAFGINADQ*----TIAVQDERE*RKTAEQGTEHFMKK 509
            Y   L++ G  E+I  T+R+RR+ F  FV RM D RLPKR++   + GG G    QE  W+  L EDL AFG+  ++       + +D+       E G   FM+K
Sbjct:  451 YAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDNRLPKRMLLGAMAGGTGYRGGQESDWVYRLGEDLVAFGMKEEKEGGRWKESAKDQEAWYDKIEDGAAWFMRK 556
[Close]
BLAST of mRNA_H-elongata_contig7899.15561.1 vs. uniprot
Match: A0A6H5KKB2_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKB2_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 2.550e-9
Identity = 39/106 (36.79%), Postives = 56/106 (52.83%), Query Frame = -2 
Query:  207 YLDTLMKTG-RESIGTTIRRRRILFTRFVSRMNDTRLPKRVMFEEIMGGAGSTEAQEK*WMRCLLEDLKAFGINADQ*----TIAVQDERE*RKTAEQGTEHFMKK 509
            Y   L++ G  E+I  T+R+RR+ F  FV RM D RLPKR++   + GG G    QE  W+  L EDL AFG+  ++       + +D+       E G   FM+K
Sbjct:  516 YAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDNRLPKRMLLGAMAGGTGYRGGQESDWVYRLGEDLVAFGMKEEKEGGRWKESAKDQEAWYDKIEDGAAWFMRK 621
[Close]
BLAST of mRNA_H-elongata_contig7899.15561.1 vs. uniprot
Match: A0A6H5JEX7_9PHAE (Reverse transcriptase domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEX7_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 2.610e-9
Identity = 31/71 (43.66%), Postives = 46/71 (64.79%), Query Frame = -2 
Query:  300 YLDTLMKTGRESIGTTIRRRRILFTRFVSRMNDTRLPKRVMFEEIMGGAGSTEAQ-EK*WMRCLLEDLKAF 509
            Y   L + G +S+  T+R+RR+LF   V+R  D RLPKR+MF E++GG G  +   E+ W+ CL +D+K F
Sbjct:  628 YAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEGPGQGNPEQNWLTCLKDDMKMF 698
[Close]
BLAST of mRNA_H-elongata_contig7899.15561.1 vs. uniprot
Match: A0A6H5LM52_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LM52_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 2.680e-9
Identity = 39/106 (36.79%), Postives = 56/106 (52.83%), Query Frame = -2 
Query:  207 YLDTLMKTG-RESIGTTIRRRRILFTRFVSRMNDTRLPKRVMFEEIMGGAGSTEAQEK*WMRCLLEDLKAFGINADQ*----TIAVQDERE*RKTAEQGTEHFMKK 509
            Y   L++ G  E+I  T+R+RR+ F  FV RM D RLPKR++   + GG G    QE  W+  L EDL AFG+  ++       + +D+       E G   FM+K
Sbjct:  781 YAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDNRLPKRMLLGAMAGGTGYRGGQESDWVYRLGEDLVAFGMKEEKEGGRWKESAKDQEAWYDKIEDGAAWFMRK 886
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7899.15561.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JCQ1_9PHAE1.360e-1044.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KL86_9PHAE8.010e-1044.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KSH7_9PHAE1.760e-936.79Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KB07_9PHAE1.950e-936.79Reverse transcriptase domain-containing protein (F... [more]
A0A6H5L5T8_9PHAE2.290e-936.79Reverse transcriptase domain-containing protein n=... [more]
A0A6H5LD24_9PHAE2.400e-936.79Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JF72_9PHAE2.500e-936.79Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KKB2_9PHAE2.550e-936.79Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JEX7_9PHAE2.610e-943.66Reverse transcriptase domain-containing protein n=... [more]
A0A6H5LM52_9PHAE2.680e-936.79Reverse transcriptase domain-containing protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig7899contigH-elongata_contig7899:9104..9613 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size510
Cds size510
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931194.4149017-CDS-H-elongata_contig7899:9103..96131622931194.4149017-CDS-H-elongata_contig7899:9103..9613Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7899 9104..9613 +
1691679736.5467522-CDS-H-elongata_contig7899:9103..96131691679736.5467522-CDS-H-elongata_contig7899:9103..9613Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7899 9104..9613 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig7899.15561.1prot_H-elongata_contig7899.15561.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig7899 9104..9613 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig7899.15561.1

>prot_H-elongata_contig7899.15561.1 ID=prot_H-elongata_contig7899.15561.1|Name=mRNA_H-elongata_contig7899.15561.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=170bp
MVHNTTTRKSNTSKEKERNTKNISYTVINELHVDVRARAYRRMIERRATG
STKEKKKSGPVLTFFAAINFFMKCSVPCSAVLRYSLSSWTAIVHWSALIP
KALRSSRRHRIHYFSCASVEPAPPMISSNITRFGSLVSFMRDTNLVKRIR
LLRMVVPILSLPVFMRVSR*
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mRNA from alignment at H-elongata_contig7899:9104..9613+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig7899.15561.1 ID=mRNA_H-elongata_contig7899.15561.1|Name=mRNA_H-elongata_contig7899.15561.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=510bp|location=Sequence derived from alignment at H-elongata_contig7899:9104..9613+ (Himanthalia elongata Himel1 dioecious)
ATGGTGCATAATACTACTACTCGGAAAAGCAACACCTCCAAAGAAAAAGA
AAGAAACACAAAAAATATATCATACACAGTTATTAACGAACTGCATGTGG
ATGTCAGGGCGCGGGCCTATCGGAGAATGATTGAACGAAGAGCCACGGGT
TCAACGAAGGAAAAGAAAAAATCCGGTCCAGTCCTGACTTTCTTTGCAGC
GATCAATTTCTTCATGAAATGTTCCGTCCCTTGTTCCGCCGTCTTGCGCT
ATTCCCTCTCGTCCTGGACTGCAATCGTTCACTGGTCGGCGTTGATACCG
AAAGCTTTGAGGTCTTCCAGAAGACACCGCATCCACTATTTTTCCTGCGC
CTCCGTGGAGCCCGCGCCCCCCATGATTTCTTCGAACATCACGCGCTTCG
GCAGTCTCGTGTCGTTCATGCGCGACACAAATCTCGTGAAAAGGATCCGC
CTCCTGCGTATGGTCGTCCCGATACTCTCCCTTCCCGTCTTCATGAGGGT
GTCCAGATAG
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Coding sequence (CDS) from alignment at H-elongata_contig7899:9104..9613+

>mRNA_H-elongata_contig7899.15561.1 ID=mRNA_H-elongata_contig7899.15561.1|Name=mRNA_H-elongata_contig7899.15561.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1020bp|location=Sequence derived from alignment at H-elongata_contig7899:9104..9613+ (Himanthalia elongata Himel1 dioecious)
ATGGTGCATAATACTACTACTCGGAAAAGCAACACCTCCAAAGAAAAAGA
AAGAAACACAAAAAATATATCATACACAGTTATTAACGAACTGCATGTGG
ATGTCAGGGCGCGGGCCTATCGGAGAATGATTGAACGAAGAGCCACGGGT
TCAACGAAGGAAAAGAAAAAATCCGGTCCAGTCCTGACTTTCTTTGCAGC
GATCAATTTCTTCATGAAATGTTCCGTCCCTTGTTCCGCCGTCTTGCGCT
ATTCCCTCTCGTCCTGGACTGCAATCGTTCACTGGTCGGCGTTGATACCG
AAAGCTTTGAGGTCTTCCAGAAGACACCGCATCCACTATTTTTCCTGCGC
CTCCGTGGAGCCCGCGCCCCCCATGATTTCTTCGAACATCACGCGCTTCG
GCAGTCTCGTGTCGTTCATGCGCGACACAAATCTCGTGAAAAGGATCCGC
CTCCTGCGTATGGTCGTCCCGATACTCTCCCTTCCCGTCTTCATGAGGGT
GTCCAGATAGATGGTGCATAATACTACTACTCGGAAAAGCAACACCTCCA
AAGAAAAAGAAAGAAACACAAAAAATATATCATACACAGTTATTAACGAA
CTGCATGTGGATGTCAGGGCGCGGGCCTATCGGAGAATGATTGAACGAAG
AGCCACGGGTTCAACGAAGGAAAAGAAAAAATCCGGTCCAGTCCTGACTT
TCTTTGCAGCGATCAATTTCTTCATGAAATGTTCCGTCCCTTGTTCCGCC
GTCTTGCGCTATTCCCTCTCGTCCTGGACTGCAATCGTTCACTGGTCGGC
GTTGATACCGAAAGCTTTGAGGTCTTCCAGAAGACACCGCATCCACTATT
TTTCCTGCGCCTCCGTGGAGCCCGCGCCCCCCATGATTTCTTCGAACATC
ACGCGCTTCGGCAGTCTCGTGTCGTTCATGCGCGACACAAATCTCGTGAA
AAGGATCCGCCTCCTGCGTATGGTCGTCCCGATACTCTCCCTTCCCGTCT
TCATGAGGGTGTCCAGATAG
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