mRNA_H-elongata_contig7893.15557.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig7893.15557.1
Unique NamemRNA_H-elongata_contig7893.15557.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig7893.15557.1 vs. uniprot
Match: D8LCX1_ECTSI (PNP_UDP_1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCX1_ECTSI)

HSP 1 Score: 344 bits (882), Expect = 5.110e-118
Identity = 162/197 (82.23%), Postives = 182/197 (92.39%), Query Frame = 1
Query:    1 AEAAPLIERLGLVEEPGRFPTAAPSKCFSGRYKEAAVSAVVNGKCSRFKVDQIGTVAAGLSTWLSVETLKPDLVINAGTAGGFKKHDTSIGDVFISSRVRNHDRRIPIPGFKEFGVGDHESHPTPSMVKELGYKEGVVSTGSSFDSTDMDNKMMEENDARVKDMEAAAVAWACEQHNTPMFCIKVVTDLVDGGGVGQ 591
            AEA PLIERLGLVE+P +FP AAPSKCFSG Y+ AA++ V NGKCSRF VDQIGTVAAGLSTWLSVE +KPD+VINAGTAGGFKKHDT+IGDVFIS+ V+NHDRRIPIPGFKEFG+G+HESHP P M+KELG+K+GVV+TGSSFD T+ D+KMMEENDARVKDMEAAAVAWACEQH TP+FCIKVVTDLVDGGGVG+
Sbjct:   18 AEACPLIERLGLVEDPDKFPAAAPSKCFSGSYQGAAINVVTNGKCSRFGVDQIGTVAAGLSTWLSVEAIKPDIVINAGTAGGFKKHDTAIGDVFISTSVKNHDRRIPIPGFKEFGIGNHESHPAPEMLKELGFKQGVVTTGSSFDHTETDDKMMEENDARVKDMEAAAVAWACEQHGTPLFCIKVVTDLVDGGGVGE 214          
BLAST of mRNA_H-elongata_contig7893.15557.1 vs. uniprot
Match: A0A6H5JA26_9PHAE (PNP_UDP_1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA26_9PHAE)

HSP 1 Score: 347 bits (889), Expect = 7.370e-118
Identity = 164/197 (83.25%), Postives = 183/197 (92.89%), Query Frame = 1
Query:    1 AEAAPLIERLGLVEEPGRFPTAAPSKCFSGRYKEAAVSAVVNGKCSRFKVDQIGTVAAGLSTWLSVETLKPDLVINAGTAGGFKKHDTSIGDVFISSRVRNHDRRIPIPGFKEFGVGDHESHPTPSMVKELGYKEGVVSTGSSFDSTDMDNKMMEENDARVKDMEAAAVAWACEQHNTPMFCIKVVTDLVDGGGVGQ 591
            AEA+PLIERLGLVE+P +FP AAPSKCFSG Y+ AA++ V NGKCSRF VDQ+GTVAAGLSTWLSVE +KPDLVINAGTAGGFKKHDT+IGDVFIS+ V+NHDRRIPIPGFKEFG+G+HESHPTP M+KELG+K+GVVSTGSSFD T  D+KMMEENDARVKDMEAAAVAWACEQH TP+FCIKVVTDLVDGGGVG+
Sbjct:  100 AEASPLIERLGLVEDPDKFPAAAPSKCFSGSYQGAAINVVTNGKCSRFGVDQVGTVAAGLSTWLSVEAIKPDLVINAGTAGGFKKHDTAIGDVFISTSVKNHDRRIPIPGFKEFGIGNHESHPTPEMLKELGFKQGVVSTGSSFDHTKTDDKMMEENDARVKDMEAAAVAWACEQHGTPLFCIKVVTDLVDGGGVGE 296          
BLAST of mRNA_H-elongata_contig7893.15557.1 vs. uniprot
Match: A0A835YY09_9STRA (Nucleoside phosphorylase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YY09_9STRA)

HSP 1 Score: 223 bits (567), Expect = 2.470e-70
Identity = 113/193 (58.55%), Postives = 135/193 (69.95%), Query Frame = 1
Query:    1 AEAAPLIERLGLVEEPGRFPTAAPSKCFSGRYKEAAVSAVVNGKCSRFKVDQIGTVAAGLSTWLSVETLKPDLVINAGTAGGFKKHDTSIGDVFISSRVRNHDRRIPIPGFKEFGVGDHESHPTPSMVKELGYKEGVVSTGSSFDSTDMDNKMMEENDARVKDMEAAAVAWACEQHN-TPMFCIKVVTDLVDG 576
            AEA PLI+ L L  +   FP +AP KC++       +  V NGKC R  VD +GTVA GL+ WLS+E  KPDLVINAGTAGGF +   +IGDVF+SSR  NHDRRI IPG+ E+GVG  ++ PT  +   LGYK GVV+T +S D  + D K M  N+A VKDME AAVAWACEQHN TP FCIKVVTD+VDG
Sbjct:    3 AEAQPLIDHLKLELDEAAFPASAPCKCYTSERNGYTMHVVTNGKCRRHGVDHVGTVAGGLAAWLSIEKFKPDLVINAGTAGGFNRMGAAIGDVFVSSRTVNHDRRIAIPGWTEWGVGKTDAVPTEQLRGALGYKHGVVTTSNSLDFIEEDAKHMLANEASVKDMEGAAVAWACEQHNNTPFFCIKVVTDIVDG 195          
BLAST of mRNA_H-elongata_contig7893.15557.1 vs. uniprot
Match: A0A7S0S4A1_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0S4A1_9CHLO)

HSP 1 Score: 205 bits (522), Expect = 3.880e-63
Identity = 104/194 (53.61%), Postives = 135/194 (69.59%), Query Frame = 1
Query:    1 AEAAPLIERLGLV-EEPGRFPTAAPSKCFSGRYKEAAVSAVVNGKCSRFKVDQIGTVAAGLSTWLSVETLKPDLVINAGTAGGFKKHDTSIGDVFISSRVRNHDRRIPIPGFKEFGVGDHESHPTPSMVKELGYKEGVVSTGSSFDSTDMDNKMMEENDARVKDMEAAAVAWACEQHNTPMFCIKVVTDLVDGG 579
            AEA PLI RLGLV ++P +    AP   +SG     AV  V NG+C    VD +GTV A LST+L+V+  KPDLVI+AGTAGGFK    SIGD+F+S+ V NHDRRIP+P F ++G+G   + PTP+MV  LG K GVV++G+S D TD    +M+E++A VK+MEAAA+AW      TP+ C+K VTD+VDGG
Sbjct:   31 AEAQPLITRLGLVKDDPPKVLQPAPCVTYSGSLGSLAVHVVWNGRCGTHGVDNVGTVPAALSTYLAVQAFKPDLVISAGTAGGFKSQGASIGDIFVSTHVVNHDRRIPLPSFDQYGLGKASTLPTPNMVTSLGLKTGVVTSGNSLDYTDKCMDIMKEHEAAVKEMEAAAIAWVTALFGTPLVCVKAVTDIVDGG 224          
BLAST of mRNA_H-elongata_contig7893.15557.1 vs. uniprot
Match: W7TST5_9STRA (Nucleoside phosphorylase domain protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TST5_9STRA)

HSP 1 Score: 202 bits (515), Expect = 5.830e-62
Identity = 102/191 (53.40%), Postives = 135/191 (70.68%), Query Frame = 1
Query:    4 EAAPLIERLGLVEEPGRFPTAAPSKCFSGRYKEAAVSAVVNGKCSRFKVDQIGTVAAGLSTWLSVETLKPDLVINAGTAGGFKKHDTSIGDVFISSRVRNHDRRIPIPGFKEFGVGDHESHPTPSMVKELGYKEGVVSTGSSFDSTDMDNKMMEENDARVKDMEAAAVAWACEQHNTPMFCIKVVTDLVDG 576
            EA PLI +LGL ++   F  AAP  CF+G Y    ++ V NGK  +F  D +GTV A L+T+L+VE LKPDL+INAGTAGGF+    +IGDV ISS + NHDRR+ +P F ++GV +H++  TP + + L +K GVVSTG+S D  + D+ +M  NDA VKDMEAAAVAWA E ++ P F +KVVTD+VDG
Sbjct:   42 EAMPLITKLGLTQQSNYFGHAAPFHCFTGTYNNYNLAIVTNGKDRKFGCDNVGTVPAALATYLAVEQLKPDLLINAGTAGGFESKGMAIGDVLISSTIHNHDRRMLLPIFVDYGVHNHKAVETPRLREALKFKLGVVSTGNSLDHVEADDALMAANDASVKDMEAAAVAWAAELYSVPYFALKVVTDIVDG 232          
BLAST of mRNA_H-elongata_contig7893.15557.1 vs. uniprot
Match: A0A7S2V4K5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V4K5_9STRA)

HSP 1 Score: 201 bits (512), Expect = 1.760e-61
Identity = 107/206 (51.94%), Postives = 135/206 (65.53%), Query Frame = 1
Query:    1 AEAAPLIERLGLV-------EEPGRFPTAA-------PSKCFSGRYKEAAVSAVVNGKCSRFKVDQIGTVAAGLSTWLSVETLKPDLVINAGTAGGFKKHDTSIGDVFISSRVRNHDRRIPIPGFKEFGVGDHESHPTPSMVKELGYKEGVVSTGSSFDSTDMDNKMMEENDARVKDMEAAAVAWACEQHNTPMFCIKVVTDLVDG 576
            AEAAPL+E LGL        E  G    +A       P+  + G   E  +  V NGK  ++ VD +GTV AGL T+LS+  + PD+VINAGT GGF      +GDVFISS  +NHDRRI IPGF E+G+GD+ + PTP++VKELGYK GVV+TG+S D    D+++M  NDA VKDME AA+A   E +NTP F +KVVTDLVDG
Sbjct:   29 AEAAPLVEHLGLTKCECNGDESNGDGGQSANILSGPMPAVVYEGEVNECKIFVVTNGKDPKYGVDNVGTVCAGLVTYLSLLAISPDIVINAGTCGGFISKGAQVGDVFISSAFKNHDRRIAIPGFSEWGIGDYAAVPTPNLVKELGYKTGVVTTGNSLDHVPKDDEIMAANDASVKDMEGAAIAAVAEMYNTPCFGVKVVTDLVDG 234          
BLAST of mRNA_H-elongata_contig7893.15557.1 vs. uniprot
Match: A0A1D1ZX64_AUXPR (PNP_UDP_1 domain-containing protein n=1 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A1D1ZX64_AUXPR)

HSP 1 Score: 199 bits (505), Expect = 2.400e-60
Identity = 99/193 (51.30%), Postives = 132/193 (68.39%), Query Frame = 1
Query:    1 AEAAPLIERLGLVEEPGR-FPTAAPSKCFSGRYKEAAVSAVVNGKCSRFKVDQIGTVAAGLSTWLSVETLKPDLVINAGTAGGFKKHDTSIGDVFISSRVRNHDRRIPIPGFKEFGVGDHESHPTPSMVKELGYKEGVVSTGSSFDSTDMDNKMMEENDARVKDMEAAAVAWACEQHNTPMFCIKVVTDLVDG 576
            AEAAPLI+ LGLV++  R  P  AP   FSG +  A V  VVNGKC +  VD +GTV A L+ +L+++   PDLVI+ GTAGGF     +IGDVF+S+   NHDRRIPIPGF ++G+G H + PTP +   LG K G+VS+G+S D  + D ++M E+D  VK+MEAAA+AW+      PMF +K +TD+VDG
Sbjct:   48 AEAAPLIQALGLVQDTPRVIPEPAPCVSFSGSHAGAHVHVVVNGKCGKHGVDNVGTVPAALTAYLALQAFDPDLVISTGTAGGFGAQGAAIGDVFLSTATVNHDRRIPIPGFDQYGLGLHAALPTPQLQAALGLKAGLVSSGNSLDYVERDMEIMREHDTSVKEMEAAAIAWSASLFGVPMFSVKAITDIVDG 240          
BLAST of mRNA_H-elongata_contig7893.15557.1 vs. uniprot
Match: A0A6S9GE08_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9GE08_HETAK)

HSP 1 Score: 193 bits (491), Expect = 1.670e-58
Identity = 99/192 (51.56%), Postives = 129/192 (67.19%), Query Frame = 1
Query:    1 AEAAPLIERLGLVEEPGRFPTAAPSKCFSGRYKEAAVSAVVNGKCSRFKVDQIGTVAAGLSTWLSVETLKPDLVINAGTAGGFKKHDTSIGDVFISSRVRNHDRRIPIPGFKEFGVGDHESHPTPSMVKELGYKEGVVSTGSSFDSTDMDNKMMEENDARVKDMEAAAVAWACEQHNTPMFCIKVVTDLVDG 576
            AEA PLI+ LGL E+   F    P+KCFSG      V  VVNG+  +F  D +GTV A L+T+  ++TL PDL+INAGTAGGF++    IGD+F+S+  +NHDRRI IP F E+  G +E   T +M KELG+K G+V+TG+S D    D+++M ENDA VKDMEAAA+A       TP F +K VTD+VDG
Sbjct:   27 AEAQPLIDCLGLTEQSSVFSGPLPAKCFSGLVDGCNVDVVVNGQDPKFGNDSVGTVCAALTTYEGLKTLSPDLLINAGTAGGFRRKGAEIGDIFLSTECKNHDRRIAIPSFTEWATGAYECVSTANMQKELGFKCGIVTTGNSLDHEPKDDELMLENDASVKDMEAAAIASTAALFETPFFAVKSVTDIVDG 218          
BLAST of mRNA_H-elongata_contig7893.15557.1 vs. uniprot
Match: A0A087SFB9_AUXPR (5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 2 n=2 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A087SFB9_AUXPR)

HSP 1 Score: 193 bits (491), Expect = 2.450e-58
Identity = 100/207 (48.31%), Postives = 137/207 (66.18%), Query Frame = 1
Query:    1 AEAAPLIERLGLVEEPGR-FPTAAPSKCFSGRYKEAAVSAVVNGKCSRFKVDQIGTVAAGLSTWLSVETLKPDLVINAGTAGGFKKHDTSIGDVFISSRVRNHDRRIPIPGFKEFGVGDHESHPTPSMVKELGYKEGVVSTGSSFDSTDMDNKMMEENDARVKDMEAAAVAWACEQHNTPMFCIKVVTDLVDG-GGVGQVSAPLRQV 615
            AEAAPLI+ LGLV++  R  P  AP   FSG +  A V  VVNGKC +  VD +GTV A L+ +L+++   PDLVI+ GTAGGF     +IGDVF+S+   NHDRRIPIPGF ++G+G H + PTP +   LG K G+VS+G+S D  + D ++M E+D  VK+MEAAA+AW+      PMF +K +TD+ +    +   +A L+QV
Sbjct:   48 AEAAPLIQALGLVQDTPRVIPEPAPCVSFSGSHAGAHVHVVVNGKCGKHGVDNVGTVPAALTAYLALQAFDPDLVISTGTAGGFGAQGAAIGDVFLSTATVNHDRRIPIPGFDQYGLGLHAALPTPQLQAALGLKAGLVSSGNSLDYVERDMEIMREHDTSVKEMEAAAIAWSASLFGVPMFSVKAITDIDEFLENLATAAASLQQV 254          
BLAST of mRNA_H-elongata_contig7893.15557.1 vs. uniprot
Match: A0A7S0Y7R1_9CHLO (Hypothetical protein n=1 Tax=Polytomella parva TaxID=51329 RepID=A0A7S0Y7R1_9CHLO)

HSP 1 Score: 192 bits (487), Expect = 6.500e-58
Identity = 100/201 (49.75%), Postives = 133/201 (66.17%), Query Frame = 1
Query:    1 AEAAPLIERLGLV-EEPGRFPTAAPSKCFSGRYKEAAVSAVVNGKCSRFKVDQIGTVAAGLSTWLSVETLKPDLVINAGTAGGFKKHDTSIGDVFISSRVRNHDRRIPIPGFKEFGVGDHESHPTPSMVKELGYKEGVVSTGSSFDSTDMDNKMMEENDARVKDMEAAAVAWAC----EQHNT---PMFCIKVVTDLVDGG 579
            AEA P I+ LGL+ +EP + P   P+  FSG Y+   V  V NGK   F VD +GTV A L+++L+++ L PD+VI+AGTAGGFK    +IGDVF+ + V NHDRRIPIPGF  +G+G     PTP +   LG KEGV+S+G+S D TD   K+ME     +K+ME+AA+AW+C    +   T   P+ CIK VTD+VDGG
Sbjct:   19 AEATPFIQALGLIKDEPSKLPGPIPAVSFSGDYEGLKVHVVWNGKDPLFGVDNVGTVPASLTSYLAIQALHPDIVISAGTAGGFKSKTAAIGDVFLGTHVVNHDRRIPIPGFDAYGIGRQLCLPTPQLRAALGLKEGVISSGNSLDYTDSCLKIMEAEGVAIKEMESAAIAWSCRLFVDASGTTPLPLICIKAVTDIVDGG 219          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7893.15557.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LCX1_ECTSI5.110e-11882.23PNP_UDP_1 domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JA26_9PHAE7.370e-11883.25PNP_UDP_1 domain-containing protein n=1 Tax=Ectoca... [more]
A0A835YY09_9STRA2.470e-7058.55Nucleoside phosphorylase domain-containing protein... [more]
A0A7S0S4A1_9CHLO3.880e-6353.61Hypothetical protein n=1 Tax=Chlamydomonas leiostr... [more]
W7TST5_9STRA5.830e-6253.40Nucleoside phosphorylase domain protein n=1 Tax=Na... [more]
A0A7S2V4K5_9STRA1.760e-6151.94Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A1D1ZX64_AUXPR2.400e-6051.30PNP_UDP_1 domain-containing protein n=1 Tax=Auxeno... [more]
A0A6S9GE08_HETAK1.670e-5851.56Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A087SFB9_AUXPR2.450e-5848.315'-methylthioadenosine/S-adenosylhomocysteine nucl... [more]
A0A7S0Y7R1_9CHLO6.500e-5849.75Hypothetical protein n=1 Tax=Polytomella parva Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig7893contigH-elongata_contig7893:4888..7304 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score346.7
Seed ortholog evalue7.6e-93
Seed eggNOG ortholog2880.D8LCX1
KEGG rclassRC00063,RC00318
KEGG koko:K01244
KEGG ReactionR01401
KEGG Pathwayko00270,ko01100,map00270,map01100
KEGG ModuleM00034
GOsGO:0000003,GO:0000096,GO:0000097,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006082,GO:0006520,GO:0006555,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008477,GO:0008652,GO:0008930,GO:0009058,GO:0009066,GO:0009067,GO:0009086,GO:0009888,GO:0009987,GO:0010087,GO:0016020,GO:0016053,GO:0016787,GO:0016798,GO:0016799,GO:0017144,GO:0019509,GO:0019752,GO:0032502,GO:0043094,GO:0043102,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0048856,GO:0071265,GO:0071267,GO:0071704,GO:0071944,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607
EggNOG free text desc.methylthioadenosine nucleosidase activity
EggNOG OGs28MG5@1,2QTZK@2759
EC3.2.2.16
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionNucleoside phosphorylase domain
Ec32 orthologEc-07_007230.1
Exons4
Model size619
Cds size618
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig7893.15557.1prot_H-elongata_contig7893.15557.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig7893 4888..7304 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931194.0324838-CDS-H-elongata_contig7893:4887..50881622931194.0324838-CDS-H-elongata_contig7893:4887..5088Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7893 4888..5088 +
1691679736.3874555-CDS-H-elongata_contig7893:4887..50881691679736.3874555-CDS-H-elongata_contig7893:4887..5088Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7893 4888..5088 +
1622931194.0476274-CDS-H-elongata_contig7893:5658..57711622931194.0476274-CDS-H-elongata_contig7893:5658..5771Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7893 5659..5771 +
1691679736.4014046-CDS-H-elongata_contig7893:5658..57711691679736.4014046-CDS-H-elongata_contig7893:5658..5771Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7893 5659..5771 +
1622931194.0786927-CDS-H-elongata_contig7893:6105..62631622931194.0786927-CDS-H-elongata_contig7893:6105..6263Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7893 6106..6263 +
1691679736.4140308-CDS-H-elongata_contig7893:6105..62631691679736.4140308-CDS-H-elongata_contig7893:6105..6263Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7893 6106..6263 +
1622931194.1131206-CDS-H-elongata_contig7893:7158..73041622931194.1131206-CDS-H-elongata_contig7893:7158..7304Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7893 7159..7304 +
1691679736.4257202-CDS-H-elongata_contig7893:7158..73041691679736.4257202-CDS-H-elongata_contig7893:7158..7304Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7893 7159..7304 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig7893.15557.1

>prot_H-elongata_contig7893.15557.1 ID=prot_H-elongata_contig7893.15557.1|Name=mRNA_H-elongata_contig7893.15557.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=206bp
AEAAPLIERLGLVEEPGRFPTAAPSKCFSGRYKEAAVSAVVNGKCSRFKV
DQIGTVAAGLSTWLSVETLKPDLVINAGTAGGFKKHDTSIGDVFISSRVR
NHDRRIPIPGFKEFGVGDHESHPTPSMVKELGYKEGVVSTGSSFDSTDMD
NKMMEENDARVKDMEAAAVAWACEQHNTPMFCIKVVTDLVDGGGVGQVSA
PLRQV*
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mRNA from alignment at H-elongata_contig7893:4888..7304+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig7893.15557.1 ID=mRNA_H-elongata_contig7893.15557.1|Name=mRNA_H-elongata_contig7893.15557.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2417bp|location=Sequence derived from alignment at H-elongata_contig7893:4888..7304+ (Himanthalia elongata Himel1 dioecious)
GCCGAGGCGGCGCCTCTGATCGAGCGTCTTGGGCTCGTGGAGGAACCGGG CAGGTTCCCTACGGCGGCGCCTTCGAAGTGCTTCAGCGGACGGTACAAGG AGGCCGCCGTGAGCGCTGTGGTGAATGGGAAGTGCTCGCGTTTTAAGGTG GACCAAATCGGCACGGTGGCGGCGGGTCTCTCGACCTGGCTATCCGTCGA GGTGCGTGCGTCTCGTATCCCTTTCAGGATTGCGTTAAATTTTGAGACTG AGTTCTGAGCTCCCCTGATGAGTTATCGCTCGGGGGAGGAAGAGGGAGCG GGTAGAAATGCGCGCTAAGGAATAGCTTTCGATGTGAAGAGCCCGGGTGC CCGCACGCCCGCCGGTCGTGATTCGCTGCGATCCCACCCTCGAAAACTCG GGCCGGGCCGCCTCCCCGAAGCTCAACTCTCACCGACATCATATGAATAG GTGCTCGTCACTTTTCCAGTAGCTGCTGCGTCACTTTGGGTGGTGACGTG GCTTGCTCCGCGCCGCATGGCTCGACCCACCCTGCCTCTCGACTCGACTT GACTTGACGACGAGATGTACGCAGGACCGCCTCGTTCAACTCTTTCCGCT GCTGTATATGCCCTCTTCTCGAGCCGCGGTGACTAGGAGCCGTGACAGCA CGAAGGAGTGGAGTCCGGTGCTCTAGGCGAGGATAGCGCTAGGCGATGTC TGCAAAGAAGCGTGGTCGTGATTTTGCTTCGTGATTCCTTCCATGCCCCC CACCTCCTTTCCCCCAACCAGACGCTAAAGCCGGATCTCGTCATTAACGC TGGAACAGCCGGAGGATTCAAGAAGCACGACACGTCCATCGGCGATGTGT TCATCAGCAGCAGGGTTAGGAACCACGATAGAAGGTCAGAAAAAAATAGA GCACCGACCAAAATCCGAACGCCTTCCTCGACGCCCTTGGGGACAACTAG ATCGAGGGGAGAAGAGGGAGAAGGGGGGAGGGAGAGGGCAAGTTGTTATT TTTGCCTTTAAATTCATGCACAGTAAAAACGAGATGCTTGGTTGCTCGGG CTGCACATCTCGACCTTCCCCCCTCCCCCAGTGTCGCCGCATCTTTGTTC AACCGAGTGATCTCGACAAAAATAACGCCTCCTCTGTACTCCCCATCCCC GCCGCTGAACCCCTTTGCTCTCCATTGCTAAATGCGGGGGTGCGTCTCTT TCGCCCTCGCCACCGAAGAATTCCTATACCGGGGTTTAAAGAGTTTGGCG TGGGCGATCACGAGTCGCACCCGACGCCATCTATGGTCAAGGAGCTCGGC TACAAGGAAGGCGTGGTATCGACAGGAAGCTCGTTCGACAGCACGGACAT GGACAACAAGATGATGGAAGAGAACGGTGAGGGTGTGGGACACGGGAAGG GGCAAGGAGGCGGGGCAGAGAGAGAAAAGGGGAGATTCGTGGTGGATTAT GCTCCAAGCGTAATGGGGGACGGGAGTAGTTCGAACGGATTGTCGGCGTA GAAGCAGGCACGGGTTGAAATCGAAAATCTACGGACAAGTTTAAGTAGTA CGCGGTAGTCAAAAGTGAATGTACTAATTATAAGTAAGCGTCGTAAAGTG CACCAGTTGTGTAATTCTACACGGTAGCAGCGGAGTGCGTTTAACCGTGC GCGGTTTCTAAAACCATACAGGCAGAGAACACAAGCTCCCTGCTACCCAG ATCCCGTTCTTATATCCTTCATTGCACGGAAAACTGTGGCAACGTGTGGA GGGTGAGGGGGGACTCTTCCGGGATAACAGGAGATAAATTATCGGGGCTA CGCTGTGGCGGGTGATGCCAACGGGGTATGAAAAACCTCTTTGGGGGCGA TCGGTAGCCGTGGCGAACAAGCCGGGAGTGCCGTGATGTCATACGTGGTT ACGTGGTTCATCGAGAGAAACACGCCGGGGAATAATGTGACGTCGTACGC TGGCCCCTATGGGAATCATCGGAGCACGCGTGGATCAATATCAGGGCTGG ATGGGAGGCATGAGCGCACGTCGCCTGTCGAGTTATTTTTCTTCGCAACT TGCGAGGCATTTTTGTGATGCCCCAGCTTCTGCCTTCCCCTACCCTTAAG ATCTACATACAGAGTTCAATATATTTACACATACCTTCGAAATTATGGGG AATCGTTAGCCCCGTTCTCAATATTGGGCTATTAATAGCATCAAGCCTCG AGTCCTTTCAACCACGCCGCTGGATTAGCCAACAACGAGTTTGTCTCTTT TTTTTTTTTCTGGTGAGGCAGACGCGAGGGTAAAAGATATGGAGGCGGCC GCGGTGGCCTGGGCCTGTGAGCAGCACAATACCCCCATGTTTTGCATTAA GGTCGTGACGGACTTAGTGGACGGAGGCGGTGTTGGACAGGTGAGCGCTC CGCTCCGACAGGTGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig7893:4888..7304+

>mRNA_H-elongata_contig7893.15557.1 ID=mRNA_H-elongata_contig7893.15557.1|Name=mRNA_H-elongata_contig7893.15557.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1236bp|location=Sequence derived from alignment at H-elongata_contig7893:4888..7304+ (Himanthalia elongata Himel1 dioecious)
GCCGAGGCGGCGCCTCTGATCGAGCGTCTTGGGCTCGTGGAGGAACCGGG
CAGGTTCCCTACGGCGGCGCCTTCGAAGTGCTTCAGCGGACGGTACAAGG
AGGCCGCCGTGAGCGCTGTGGTGAATGGGAAGTGCTCGCGTTTTAAGGTG
GACCAAATCGGCACGGTGGCGGCGGGTCTCTCGACCTGGCTATCCGTCGA
GGCCGAGGCGGCGCCTCTGATCGAGCGTCTTGGGCTCGTGGAGGAACCGG
GCAGGTTCCCTACGGCGGCGCCTTCGAAGTGCTTCAGCGGACGGTACAAG
GAGGCCGCCGTGAGCGCTGTGGTGAATGGGAAGTGCTCGCGTTTTAAGGT
GGACCAAATCGGCACGGTGGCGGCGGGTCTCTCGACCTGGCTATCCGTCG
AGACGCTAAAGCCGGATCTCGTCATTAACGCTGGAACAGCCGGAGGATTC
AAGAAGCACGACACGTCCATCGGCGATGTGTTCATCAGCAGCAGGGTTAG
GAACCACGATAGAAGACGCTAAAGCCGGATCTCGTCATTAACGCTGGAAC
AGCCGGAGGATTCAAGAAGCACGACACGTCCATCGGCGATGTGTTCATCA
GCAGCAGGGTTAGGAACCACGATAGAAGAATTCCTATACCGGGGTTTAAA
GAGTTTGGCGTGGGCGATCACGAGTCGCACCCGACGCCATCTATGGTCAA
GGAGCTCGGCTACAAGGAAGGCGTGGTATCGACAGGAAGCTCGTTCGACA
GCACGGACATGGACAACAAGATGATGGAAGAGAACGAATTCCTATACCGG
GGTTTAAAGAGTTTGGCGTGGGCGATCACGAGTCGCACCCGACGCCATCT
ATGGTCAAGGAGCTCGGCTACAAGGAAGGCGTGGTATCGACAGGAAGCTC
GTTCGACAGCACGGACATGGACAACAAGATGATGGAAGAGAACGACGCGA
GGGTAAAAGATATGGAGGCGGCCGCGGTGGCCTGGGCCTGTGAGCAGCAC
AATACCCCCATGTTTTGCATTAAGGTCGTGACGGACTTAGTGGACGGAGG
CGGTGTTGGACAGGTGAGCGCTCCGCTCCGACAGGTGTAGACGCGAGGGT
AAAAGATATGGAGGCGGCCGCGGTGGCCTGGGCCTGTGAGCAGCACAATA
CCCCCATGTTTTGCATTAAGGTCGTGACGGACTTAGTGGACGGAGGCGGT
GTTGGACAGGTGAGCGCTCCGCTCCGACAGGTGTAG
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