prot_H-elongata_contig7885.15553.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig7885.15553.1
Unique Nameprot_H-elongata_contig7885.15553.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length478
Homology
BLAST of mRNA_H-elongata_contig7885.15553.1 vs. uniprot
Match: D7FY03_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FY03_ECTSI)

HSP 1 Score: 169 bits (427), Expect = 2.220e-41
Identity = 240/644 (37.27%), Postives = 268/644 (41.61%), Query Frame = 0
Query:    1 DGRYRQKLSWCALDEETGKLDYLTEGLSPTGGRRASTSSVGSRTTTGDRDSLLPSGQDSSFSXXXXXXXXD------------------------------DPVPAPSNPMREDSLGGFSSPRRNSLTPTG----FISPIAPLD----GVATPKPSSGRSWVAPQFTIDPENRAPNVLLEDAPARDDHPPLSSTPAAEDGTPIGDARVVASASAAPI--GSATTLSPIPST-RQRLQTLGNSPASRSAGSSG-------------------RRSSTSAYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGTANDNSAVV--------------------RTVKPTHGG----------------SGDCRQDGESNVE--VGREGSYTSVSASADGGARASDNAGVFASVAGTGVESAANSVGME----------NPGREPSYGTV-SQAFVSTATSTDRGGSLLASNAAEDGAVPRKSEISTYFSSIAS-----------------------GVGASYSA------VENTTEAVHGPGIGA--------SEGQGKDSDGR--------------------VVVMSTADPGLLVRPPRVGDGKLEHDKERRRGVAGDLEAVIAELSRRKSSLAWEDGEGA 478
            D RYRQKLSWCALDEETG+LDYLTEGLSP GGRR STSSVGS  T G               XXXXXXXX                               D   A ++   ED   GF SP R  L P+     F+SP  P+     G  T K  SGRSW APQF +D +N  P VLLE +P R  H  L               R  AS  + P+  G   +LSP P+  R  +Q    SPA   AG+                     RRSS SA+                XXXXXXXXXXXXXXXX   G                             RT +    G                  +  + GES V+  VG +   T V AS  GG       G  ASVA T      +  G +          NPGRE SYGTV S AF S     D  GSLLAS       +PRKS  STYF S AS                       G G   SA         T  A  G G GA         + QG    G+                    +VV    DP  LVRPPRVGDGKLEHDKERR GVA DLEAVIAEL+RRKS LAWEDGEGA
Sbjct:   49 DERYRQKLSWCALDEETGQLDYLTEGLSPKGGRRMSTSSVGSSRTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCDDDAASTSTRGEDPAAGFLSPSRFRLPPSSTSPRFMSP--PIGEGGGGGGTAKAHSGRSWKAPQFAMDLDNHGPGVLLEHSPTRHGHTGLQQQ----------RRRAAASDESFPVSGGGTRSLSPSPALHRHNMQWARQSPAGTGAGAGAMKNGGXXXXXXXXXXXXXXRRSSNSAFSLGTGPVRGPGSWTRGXXXXXXXXXXXXXXXXVSSGXXXXXXXXXXXXXXXXXXXXXXXPEQGRGRTAERAEQGCARAPPQQLTSAPEEDEAENEERGESPVQPRVGVDDEVTEVGAS--GGTDVCP--GAAASVAATAKPEEKSWAGEDDKVGGAASTANPGREASYGTVTSSAFCSGVG--DARGSLLASF----NTLPRKSLESTYFESNASVAVTVPSASXXXXXXXXXXVVWGGAGEPLSASGGDTGAGRTPAATGGQGEGAVKAAEKEEEQAQGPKKGGKSGGGGRSRXXXXMARGPGADMVVGHAVDPAALVRPPRVGDGKLEHDKERRLGVANDLEAVIAELNRRKSLLAWEDGEGA 670          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7885.15553.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FY03_ECTSI2.220e-4137.27Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig7885contigH-elongata_contig7885:5103..9259 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig7885.15553.1mRNA_H-elongata_contig7885.15553.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig7885 5103..9259 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig7885.15553.1 ID=prot_H-elongata_contig7885.15553.1|Name=mRNA_H-elongata_contig7885.15553.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=478bp
DGRYRQKLSWCALDEETGKLDYLTEGLSPTGGRRASTSSVGSRTTTGDRD
SLLPSGQDSSFSSAAGGGGEDDPVPAPSNPMREDSLGGFSSPRRNSLTPT
GFISPIAPLDGVATPKPSSGRSWVAPQFTIDPENRAPNVLLEDAPARDDH
PPLSSTPAAEDGTPIGDARVVASASAAPIGSATTLSPIPSTRQRLQTLGN
SPASRSAGSSGRRSSTSAYSFGTSPTRGAISWARRSGGGSNGSSRVSGGG
AAGRGTANDNSAVVRTVKPTHGGSGDCRQDGESNVEVGREGSYTSVSASA
DGGARASDNAGVFASVAGTGVESAANSVGMENPGREPSYGTVSQAFVSTA
TSTDRGGSLLASNAAEDGAVPRKSEISTYFSSIASGVGASYSAVENTTEA
VHGPGIGASEGQGKDSDGRVVVMSTADPGLLVRPPRVGDGKLEHDKERRR
GVAGDLEAVIAELSRRKSSLAWEDGEGA
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