mRNA_H-elongata_contig7885.15553.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig7885.15553.1 vs. uniprot
Match: D7FY03_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FY03_ECTSI) HSP 1 Score: 169 bits (427), Expect = 2.220e-41 Identity = 240/644 (37.27%), Postives = 268/644 (41.61%), Query Frame = 1
Query: 1 DGRYRQKLSWCALDEETGKLDYLTEGLSPTGGRRASTSSVGSRTTTGDRDSLLPSGQDSSFSXXXXXXXXD------------------------------DPVPAPSNPMREDSLGGFSSPRRNSLTPTG----FISPIAPLD----GVATPKPSSGRSWVAPQFTIDPENRAPNVLLEDAPARDDHPPLSSTPAAEDGTPIGDARVVASASAAPI--GSATTLSPIPST-RQRLQTLGNSPASRSAGSSG-------------------RRSSTSAYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGTANDNSAVV--------------------RTVKPTHGG----------------SGDCRQDGESNVE--VGREGSYTSVSASADGGARASDNAGVFASVAGTGVESAANSVGME----------NPGREPSYGTV-SQAFVSTATSTDRGGSLLASNAAEDGAVPRKSEISTYFSSIAS-----------------------GVGASYSA------VENTTEAVHGPGIGA--------SEGQGKDSDGR--------------------VVVMSTADPGLLVRPPRVGDGKLEHDKERRRGVAGDLEAVIAELSRRKSSLAWEDGEGA 1434
D RYRQKLSWCALDEETG+LDYLTEGLSP GGRR STSSVGS T G XXXXXXXX D A ++ ED GF SP R L P+ F+SP P+ G T K SGRSW APQF +D +N P VLLE +P R H L R AS + P+ G +LSP P+ R +Q SPA AG+ RRSS SA+ XXXXXXXXXXXXXXXX G RT + G + + GES V+ VG + T V AS GG G ASVA T + G + NPGRE SYGTV S AF S D GSLLAS +PRKS STYF S AS G G SA T A G G GA + QG G+ +VV DP LVRPPRVGDGKLEHDKERR GVA DLEAVIAEL+RRKS LAWEDGEGA
Sbjct: 49 DERYRQKLSWCALDEETGQLDYLTEGLSPKGGRRMSTSSVGSSRTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCDDDAASTSTRGEDPAAGFLSPSRFRLPPSSTSPRFMSP--PIGEGGGGGGTAKAHSGRSWKAPQFAMDLDNHGPGVLLEHSPTRHGHTGLQQQ----------RRRAAASDESFPVSGGGTRSLSPSPALHRHNMQWARQSPAGTGAGAGAMKNGGXXXXXXXXXXXXXXRRSSNSAFSLGTGPVRGPGSWTRGXXXXXXXXXXXXXXXXVSSGXXXXXXXXXXXXXXXXXXXXXXXPEQGRGRTAERAEQGCARAPPQQLTSAPEEDEAENEERGESPVQPRVGVDDEVTEVGAS--GGTDVCP--GAAASVAATAKPEEKSWAGEDDKVGGAASTANPGREASYGTVTSSAFCSGVG--DARGSLLASF----NTLPRKSLESTYFESNASVAVTVPSASXXXXXXXXXXVVWGGAGEPLSASGGDTGAGRTPAATGGQGEGAVKAAEKEEEQAQGPKKGGKSGGGGRSRXXXXMARGPGADMVVGHAVDPAALVRPPRVGDGKLEHDKERRLGVANDLEAVIAELNRRKSLLAWEDGEGA 670 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7885.15553.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig7885.15553.1 >prot_H-elongata_contig7885.15553.1 ID=prot_H-elongata_contig7885.15553.1|Name=mRNA_H-elongata_contig7885.15553.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=478bp DGRYRQKLSWCALDEETGKLDYLTEGLSPTGGRRASTSSVGSRTTTGDRDback to top mRNA from alignment at H-elongata_contig7885:5103..9259- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig7885.15553.1 ID=mRNA_H-elongata_contig7885.15553.1|Name=mRNA_H-elongata_contig7885.15553.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4157bp|location=Sequence derived from alignment at H-elongata_contig7885:5103..9259- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig7885:5103..9259- >mRNA_H-elongata_contig7885.15553.1 ID=mRNA_H-elongata_contig7885.15553.1|Name=mRNA_H-elongata_contig7885.15553.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2868bp|location=Sequence derived from alignment at H-elongata_contig7885:5103..9259- (Himanthalia elongata Himel1 dioecious)back to top |