mRNA_H-elongata_contig78806.15549.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig78806.15549.1
Unique NamemRNA_H-elongata_contig78806.15549.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig78806.15549.1 vs. uniprot
Match: D7FWE1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWE1_ECTSI)

HSP 1 Score: 76.6 bits (187), Expect = 1.240e-15
Identity = 32/37 (86.49%), Postives = 35/37 (94.59%), Query Frame = 1 
Query:   10 KVRVAVVLPTNAWGGEGCLGAEIGYGYLHRLPASCRS 120
            +VRVAVVLPTN WGGEGCLGAE+G+GYLHRLP SCRS
Sbjct:  171 EVRVAVVLPTNVWGGEGCLGAEVGHGYLHRLPQSCRS 207
[Close]
BLAST of mRNA_H-elongata_contig78806.15549.1 vs. uniprot
Match: A0A835YI02_9STRA (GRASP55/65 PDZ-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YI02_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 4.270e-12
Identity = 28/37 (75.68%), Postives = 32/37 (86.49%), Query Frame = 1 
Query:   10 KVRVAVVLPTNAWGGEGCLGAEIGYGYLHRLPASCRS 120
            +VRV VVLPT  WGGEGCLGAE+ +GYLHRLPA CR+
Sbjct:  173 QVRVVVVLPTLEWGGEGCLGAEMAHGYLHRLPAQCRT 209
[Close]
BLAST of mRNA_H-elongata_contig78806.15549.1 vs. uniprot
Match: A0A7S3ZJU3_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZJU3_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 3.010e-11
Identity = 25/36 (69.44%), Postives = 31/36 (86.11%), Query Frame = 1 
Query:   10 KVRVAVVLPTNAWGGEGCLGAEIGYGYLHRLPASCR 117
            +VRVAVV+PT  WGG+GCLGA++ +GYLHRLP  CR
Sbjct:  171 EVRVAVVVPTYQWGGDGCLGADVAHGYLHRLPTRCR 206
[Close]
BLAST of mRNA_H-elongata_contig78806.15549.1 vs. uniprot
Match: M4C4E4_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C4E4_HYAAE)

HSP 1 Score: 63.5 bits (153), Expect = 7.660e-11
Identity = 23/40 (57.50%), Postives = 34/40 (85.00%), Query Frame = 1 
Query:    1 LAPKVRVAVVLPTNAWGGEGCLGAEIGYGYLHRLPASCRS 120
            L  +VR+  ++PT +WGG+G LGAE+G+GYLHRLP++CR+
Sbjct:  115 LDDQVRIVTIVPTESWGGDGVLGAEVGHGYLHRLPSACRN 154
[Close]
BLAST of mRNA_H-elongata_contig78806.15549.1 vs. uniprot
Match: A0A7S2WEH5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WEH5_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 1.300e-10
Identity = 23/36 (63.89%), Postives = 30/36 (83.33%), Query Frame = 1 
Query:   10 KVRVAVVLPTNAWGGEGCLGAEIGYGYLHRLPASCR 117
            +VRVA+V+PTN W G+GCLG  +G+GYLHRLP  C+
Sbjct:  171 EVRVAIVMPTNEWNGDGCLGISVGHGYLHRLPHQCK 206
[Close]
BLAST of mRNA_H-elongata_contig78806.15549.1 vs. uniprot
Match: G4YYH1_PHYSP (Uncharacterized protein n=3 Tax=Phytophthora TaxID=4783 RepID=G4YYH1_PHYSP)

HSP 1 Score: 62.4 bits (150), Expect = 1.960e-10
Identity = 24/40 (60.00%), Postives = 32/40 (80.00%), Query Frame = 1 
Query:    1 LAPKVRVAVVLPTNAWGGEGCLGAEIGYGYLHRLPASCRS 120
            L  +VR+  ++PT  WGG+G LGAE+G+GYLHRLP+ CRS
Sbjct:  184 LEDQVRIVSIVPTERWGGDGVLGAEVGHGYLHRLPSVCRS 223
[Close]
BLAST of mRNA_H-elongata_contig78806.15549.1 vs. uniprot
Match: A0A7S3JXZ5_9STRA (Hypothetical protein n=2 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JXZ5_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 3.360e-10
Identity = 24/36 (66.67%), Postives = 29/36 (80.56%), Query Frame = 1 
Query:   10 KVRVAVVLPTNAWGGEGCLGAEIGYGYLHRLPASCR 117
            +VRVA ++PT  WGG GCLGA + +GYLHRLPA CR
Sbjct:  171 EVRVASLVPTRQWGGNGCLGANVAHGYLHRLPARCR 206
[Close]
BLAST of mRNA_H-elongata_contig78806.15549.1 vs. uniprot
Match: A0A0P1AHK2_PLAHL (Golgi reassembly stacking protein GRASP65, contains PDZ domain n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AHK2_PLAHL)

HSP 1 Score: 62.0 bits (149), Expect = 3.710e-10
Identity = 24/39 (61.54%), Postives = 31/39 (79.49%), Query Frame = 1 
Query:    1 LAPKVRVAVVLPTNAWGGEGCLGAEIGYGYLHRLPASCR 117
            L  +VR+  ++PT  WGGEG LGAE+G+GYLHRLP+ CR
Sbjct:  183 LEDQVRIVSIVPTERWGGEGILGAEVGHGYLHRLPSVCR 221
[Close]
BLAST of mRNA_H-elongata_contig78806.15549.1 vs. uniprot
Match: A0A7S2H0B5_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H0B5_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 5.510e-10
Identity = 24/37 (64.86%), Postives = 31/37 (83.78%), Query Frame = 1 
Query:   10 KVRVAVVLPTNAWGGEGCLGAEIGYGYLHRLPASCRS 120
            +VR AVV+PTN W G+G LG  +G+GYLHRLPASC++
Sbjct:  171 EVRTAVVMPTNDWKGQGSLGISVGHGYLHRLPASCKT 207
[Close]
BLAST of mRNA_H-elongata_contig78806.15549.1 vs. uniprot
Match: H3HB15_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3HB15_PHYRM)

HSP 1 Score: 60.8 bits (146), Expect = 6.590e-10
Identity = 23/39 (58.97%), Postives = 31/39 (79.49%), Query Frame = 1 
Query:    1 LAPKVRVAVVLPTNAWGGEGCLGAEIGYGYLHRLPASCR 117
            L  +VR+  ++PT  WGG+G LGAE+G+GYLHRLP+ CR
Sbjct:  187 LEDQVRIVSIVPTERWGGDGVLGAEVGHGYLHRLPSVCR 225
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig78806.15549.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWE1_ECTSI1.240e-1586.49Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YI02_9STRA4.270e-1275.68GRASP55/65 PDZ-like domain-containing protein n=1 ... [more]
A0A7S3ZJU3_9STRA3.010e-1169.44Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
M4C4E4_HYAAE7.660e-1157.50Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
A0A7S2WEH5_9STRA1.300e-1063.89Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
G4YYH1_PHYSP1.960e-1060.00Uncharacterized protein n=3 Tax=Phytophthora TaxID... [more]
A0A7S3JXZ5_9STRA3.360e-1066.67Hypothetical protein n=2 Tax=Aureoumbra lagunensis... [more]
A0A0P1AHK2_PLAHL3.710e-1061.54Golgi reassembly stacking protein GRASP65, contain... [more]
A0A7S2H0B5_9STRA5.510e-1064.86Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
H3HB15_PHYRM6.590e-1058.97Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig78806contigH-elongata_contig78806:2698..2817 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score77.8
Seed ortholog evalue1.3e-12
Seed eggNOG ortholog2880.D7FWE1
Preferred nameGORASP1
GOsGO:0000139,GO:0002009,GO:0002165,GO:0002790,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005793,GO:0005794,GO:0005795,GO:0005797,GO:0005798,GO:0005801,GO:0005829,GO:0005886,GO:0006464,GO:0006486,GO:0006487,GO:0006807,GO:0006810,GO:0006888,GO:0006900,GO:0006901,GO:0006903,GO:0006996,GO:0007030,GO:0007275,GO:0007399,GO:0007444,GO:0007472,GO:0007476,GO:0007552,GO:0007560,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009306,GO:0009653,GO:0009791,GO:0009886,GO:0009887,GO:0009888,GO:0009893,GO:0009987,GO:0010256,GO:0010604,GO:0010721,GO:0010769,GO:0010771,GO:0010975,GO:0010977,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0016333,GO:0019222,GO:0019538,GO:0022008,GO:0022603,GO:0022604,GO:0022607,GO:0030154,GO:0031090,GO:0031323,GO:0031325,GO:0031344,GO:0031345,GO:0031396,GO:0031398,GO:0031399,GO:0031401,GO:0031410,GO:0031982,GO:0031984,GO:0031985,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032940,GO:0033036,GO:0033116,GO:0034645,GO:0035107,GO:0035114,GO:0035120,GO:0035220,GO:0035239,GO:0035295,GO:0036211,GO:0042886,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0043933,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0044719,GO:0045184,GO:0045595,GO:0045596,GO:0045664,GO:0045665,GO:0046903,GO:0046907,GO:0048193,GO:0048194,GO:0048199,GO:0048207,GO:0048208,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048563,GO:0048569,GO:0048699,GO:0048707,GO:0048729,GO:0048731,GO:0048736,GO:0048737,GO:0048814,GO:0048856,GO:0048869,GO:0050767,GO:0050768,GO:0050773,GO:0050774,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0051093,GO:0051128,GO:0051129,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051239,GO:0051241,GO:0051246,GO:0051247,GO:0051338,GO:0051347,GO:0051438,GO:0051443,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051960,GO:0051961,GO:0060255,GO:0060284,GO:0060429,GO:0060562,GO:0061024,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070085,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0080090,GO:0090066,GO:0090114,GO:0097708,GO:0098588,GO:0098791,GO:0120035,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576,GO:1903320,GO:1903322,GO:1904666,GO:1904668,GO:2000026,GO:2000171
EggNOG free text desc.Golgi organization
EggNOG OGsCOG5233@1,KOG3834@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size120
Cds size120
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931193.1269522-CDS-H-elongata_contig78806:2697..28171622931193.1269522-CDS-H-elongata_contig78806:2697..2817Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78806 2698..2817 -
1691679736.0437965-CDS-H-elongata_contig78806:2697..28171691679736.0437965-CDS-H-elongata_contig78806:2697..2817Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78806 2698..2817 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig78806.15549.1prot_H-elongata_contig78806.15549.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig78806 2698..2817 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig78806.15549.1

>prot_H-elongata_contig78806.15549.1 ID=prot_H-elongata_contig78806.15549.1|Name=mRNA_H-elongata_contig78806.15549.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=40bp
LAPKVRVAVVLPTNAWGGEGCLGAEIGYGYLHRLPASCRS
back to top

mRNA from alignment at H-elongata_contig78806:2698..2817-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig78806.15549.1 ID=mRNA_H-elongata_contig78806.15549.1|Name=mRNA_H-elongata_contig78806.15549.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=120bp|location=Sequence derived from alignment at H-elongata_contig78806:2698..2817- (Himanthalia elongata Himel1 dioecious)
CTGGCGCCAAAGGTGCGGGTGGCGGTGGTGCTGCCGACCAACGCGTGGGG
TGGGGAGGGATGCTTGGGGGCCGAGATCGGTTACGGCTACCTGCACCGCC
TTCCCGCGTCTTGCAGGTCA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig78806:2698..2817-

>mRNA_H-elongata_contig78806.15549.1 ID=mRNA_H-elongata_contig78806.15549.1|Name=mRNA_H-elongata_contig78806.15549.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=240bp|location=Sequence derived from alignment at H-elongata_contig78806:2698..2817- (Himanthalia elongata Himel1 dioecious)
CTGGCGCCAAAGGTGCGGGTGGCGGTGGTGCTGCCGACCAACGCGTGGGG
TGGGGAGGGATGCTTGGGGGCCGAGATCGGTTACGGCTACCTGCACCGCC
TTCCCGCGTCTTGCAGGTCACTGGCGCCAAAGGTGCGGGTGGCGGTGGTG
CTGCCGACCAACGCGTGGGGTGGGGAGGGATGCTTGGGGGCCGAGATCGG
TTACGGCTACCTGCACCGCCTTCCCGCGTCTTGCAGGTCA
back to top