prot_H-elongata_contig7876.15544.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig7876.15544.1
Unique Nameprot_H-elongata_contig7876.15544.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length212
Homology
BLAST of mRNA_H-elongata_contig7876.15544.1 vs. uniprot
Match: A0A6H5JQV7_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQV7_9PHAE)

HSP 1 Score: 155 bits (392), Expect = 6.990e-41
Identity = 105/276 (38.04%), Postives = 134/276 (48.55%), Query Frame = 0
Query:    1 DGILLRGVELICERWAWWFRTLLNAKSPTLGPNITEGFDQWPENTPLDIQRT-----MQELTGTIHSLATGKAVGPDGVSVELFNISLNDCSVSS-------LVLEGDEVPQQCRDA-----------------------------------------------------GFRPSRSTTDMVLVVRRLQKLARKKRIPLYACSIDLTKAADSVDRTLLLTVLACFGMPQKGITAIRQFYDDMRASVRSSDGVCSGWFSVGKDVCQGCVIAPPVRNI 211
            +G+LLR  + I +RWA +F TLLN KSPTL P+I E   Q P     D QR      ++E+      L   KA G D +  EL  I  ++  V          V  G ++P++ +DA                                                     GFRP RST DM+ VVRRLQ+L R+K+IPLY C +DL KA DSVDR +L  VLA  G+P K I  IRQF+D MRA VR  DG  S WF V + V QGCV++P + NI
Sbjct:  252 NGVLLRNRDDILQRWARFFSTLLNTKSPTLNPDIIERVTQRPATR--DTQRLGDVPELEEVARATKGLKNWKAPGHDSLPAELLKIDDDEPFVLGHLHTILVKVWNGGDIPREWKDATIKVLYKKGDRSNCNNYRGISLLSHVGKVPIKIITNRLSAFCEANNILPEEQCGFRPGRSTVDMLFVVRRLQELGRRKKIPLYMCFVDLNKAYDSVDREMLWKVLARAGIPAKLIEVIRQFHDGMRARVRMDDGELSDWFFVTQGVRQGCVLSPLLFNI 525          
BLAST of mRNA_H-elongata_contig7876.15544.1 vs. uniprot
Match: A0A6H5J7L3_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7L3_9PHAE)

HSP 1 Score: 152 bits (385), Expect = 1.230e-40
Identity = 104/276 (37.68%), Postives = 134/276 (48.55%), Query Frame = 0
Query:    1 DGILLRGVELICERWAWWFRTLLNAKSPTLGPNITEGFDQWPENTPLDIQRT-----MQELTGTIHSLATGKAVGPDGVSVELFNISLNDCSVSS-------LVLEGDEVPQQCRDA-----------------------------------------------------GFRPSRSTTDMVLVVRRLQKLARKKRIPLYACSIDLTKAADSVDRTLLLTVLACFGMPQKGITAIRQFYDDMRASVRSSDGVCSGWFSVGKDVCQGCVIAPPVRNI 211
            +G+LLR  + I +RWA +F TLLN KSPTL P+I E   Q P     D QR      ++E+      L   KA G D ++ EL  I  ++  V          V  G ++P++ +DA                                                     GFRP RST DM+ VVRRLQ+L R+K+IPLY C +DL KA DSVDR +L  VLA  G+P K I  IRQF+D MRA VR  DG  S WF V + V QGCV++  + NI
Sbjct:  121 NGVLLRNRDDILQRWARFFSTLLNTKSPTLNPDIIERVTQRPATR--DTQRLGDVPELEEVARATKGLKNWKAPGYDSIAAELLKIDDDEPFVLGHLHTILVKVWNGGDIPREWKDATIKVLYKKGDRSNCNNYRGISLLSHVGKVSIKIITNRLSAFCEANNILPEEQCGFRPGRSTVDMLFVVRRLQELGRRKKIPLYMCFVDLNKAYDSVDREMLWKVLARAGIPAKLIEVIRQFHDGMRARVRMDDGELSDWFFVTQGVRQGCVLSLLLFNI 394          
BLAST of mRNA_H-elongata_contig7876.15544.1 vs. uniprot
Match: A0A6H5K3W7_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3W7_9PHAE)

HSP 1 Score: 153 bits (386), Expect = 2.370e-40
Identity = 104/276 (37.68%), Postives = 133/276 (48.19%), Query Frame = 0
Query:    1 DGILLRGVELICERWAWWFRTLLNAKSPTLGPNITEGFDQWPENTPLDIQRT-----MQELTGTIHSLATGKAVGPDGVSVELFNISLNDCSVSS-------LVLEGDEVPQQCRDA-----------------------------------------------------GFRPSRSTTDMVLVVRRLQKLARKKRIPLYACSIDLTKAADSVDRTLLLTVLACFGMPQKGITAIRQFYDDMRASVRSSDGVCSGWFSVGKDVCQGCVIAPPVRNI 211
            +G+LLR  + I +RWA +F TLLN KSPTL P+I E   Q P     D QR      ++E+      L   KA G D +  EL  I  ++  V          V  G ++P++ +DA                                                     GFRP RST DM+ VVRRLQ+L R+K+IPLY C +DL KA DSVDR +L  VLA  G+P K I  IRQF+D MRA VR  DG  S W  V + V QGCV++P + NI
Sbjct:  190 NGVLLRNRDDILQRWARFFSTLLNTKSPTLNPHIIERVTQRPATR--DTQRLGDVPELEEVARATKGLKNWKAPGHDSLPAELLKIDDDEPFVLGHLHTILVKVWNGGDIPREWKDATIKVLYKNGDRSNCNNYRGISLLSHVGKVPIKIITNRLSAFNEANNILPEEQCGFRPGRSTVDMLFVVRRLQELGRRKKIPLYMCFVDLNKAYDSVDREMLWKVLARAGIPAKLIEVIRQFHDGMRARVRMDDGELSDWLFVTQGVRQGCVLSPLLFNI 463          
BLAST of mRNA_H-elongata_contig7876.15544.1 vs. uniprot
Match: A0A6H5KHS8_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHS8_9PHAE)

HSP 1 Score: 149 bits (376), Expect = 3.340e-40
Identity = 86/220 (39.09%), Postives = 117/220 (53.18%), Query Frame = 0
Query:    1 DGILLRGVELICERWAWWFRTLLNAKSPTLGPNITEGFDQWPENTPLDIQRTMQELTGTIHSLATGKAVGPDGVSVELFNISLND-----------CSVSSLVLEGDEVPQQCR--------DAGFRPSRSTTDMVLVVRRLQKLARKKRIPLYACSIDLTKAADSVDRTLLLTVLACFGMPQKGITAIRQFYDDMRASVRSSDGVCSGWFSVGKDVCQG 201
            DG +LR    I + WA WF  LLN KSP +  +  +   +WP   PLD   ++ E+   +  +A  KAVGP  +  EL  + L+             S   L +    +   C          +GFRP RST DM+  ++RL +LARKK   ++AC +DLTKA DSVDR LL  VL  FG+P K +  IR F++ MRA VR+ DG  S WF VG+ + QG
Sbjct:  122 DGKVLRNPTFIPQLWARWFHKLLNTKSPIIDLHAADKVKRWPTCVPLDDIPSLLEVEEAVREIANRKAVGPGDLPAELIKLFLDGDQDGGRTTAPHASKVLLKVVATRLNHHCERKGILPEEQSGFRPHRSTLDMLFAIQRLHELARKKSTAVFACFVDLTKAYDSVDRDLLWDVLRRFGVPPKMLAVIRHFHEGMRARVRTDDGQYSEWFDVGQGLRQG 341          
BLAST of mRNA_H-elongata_contig7876.15544.1 vs. uniprot
Match: A0A6H5J7A9_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7A9_9PHAE)

HSP 1 Score: 148 bits (373), Expect = 3.380e-40
Identity = 104/274 (37.96%), Postives = 131/274 (47.81%), Query Frame = 0
Query:    1 DGILLRGVELICERWAWWFRTLLNAKSPTLGPNITEGFDQWPENTPLDIQRT-----MQELTGTIHSLATGKAVGPDGVSVELFNIS--------------------------LNDCSVSSLVLEGD-----------------EVP--------------------QQCRDAGFRPSRSTTDMVLVVRRLQKLARKKRIPLYACSIDLTKAADSVDRTLLLTVLACFGMPQKGITAIRQFYDDMRASVRSSDGVCSGWFSVGKDVCQGCVIAP 206
            +G+LLR  + I +RWA +F TLLN KSPTL P+I E   Q P     D QR      ++E+      L   KA G D +  EL  I                             D ++  L  +G+                 +VP                    +QC   GFRP RST DM+ VVRRLQ+L R+K+IPLY C +DL KA DSVDR +L  VLA  G+P K I  IRQF+D MRA VR  DG  S WF V + V QGCV++P
Sbjct:   29 NGVLLRNRDDILQRWARFFSTLLNTKSPTLNPDIIERVTQRPATR--DTQRLGDVPELEEVARATKGLKNWKAPGHDSLPAELLKIDDDEPFVLGHLHTILVKVWNREDNPRDWKDTTIKVLYKKGNRSNCNNYRGISLLSHVGKVPIKIITNRLSAFCEANNILPEEQC---GFRPGRSTVDMLFVVRRLQELGRRKKIPLYMCFVDLNKAYDSVDREMLWKVLARAGIPAKLIEVIRQFHDGMRARVRMDDGELSDWFFVTQGVRQGCVLSP 297          
BLAST of mRNA_H-elongata_contig7876.15544.1 vs. uniprot
Match: A0A6H5KA63_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA63_9PHAE)

HSP 1 Score: 155 bits (392), Expect = 5.130e-40
Identity = 93/237 (39.24%), Postives = 125/237 (52.74%), Query Frame = 0
Query:    1 DGILLRGVELICERWAWWFRTLLNAKSPTLGPNITEGFDQWPENTPLDIQRTMQELTGTIHSLATGKAVGPDGVSVELFNISLND------------------CSVSSLVLEGDEVPQQCR-------DAGFRPSRSTTDMVLVVRRLQKLARKKRIPLYACSIDLTKAADSVDRTLLLTVLACFGMPQKGITAIRQFYDDMRASVRSSDGVCSGWFSVGKDVCQGCVIAPPVRNIL 212
            DG +LR    I +RWA WF  LLN KSPT+  +  +   +WP   PLD   +  E+ G +  +A  KAVGPD +  +L  +                      C V   V+     P   R        +GFRP RST DM+  ++RL +LARKK   ++AC +DLTKA DSVDR LL  VL  FG+P K +  IR F++ MRA VR+ DG CS  F VG+ + Q C +AP +  +L
Sbjct:  445 DGKVLRDPTFIRQRWARWFHKLLNTKSPTIDLHAADKVKRWPTCVPLDDISSPLEVEGAVLEMADRKAVGPDDLPAKLIKLLFKKGDTMECGNYRGIFLVAHACKVLLKVVVTRLSPYCERKGILPEEQSGFRPHRSTLDMLFAIQRLHELARKKSTAVFACFVDLTKAYDSVDRDLLWDVLRRFGVPPKMLAVIRHFHEGMRARVRTDDGQCSELFDVGQGLRQVCNLAPVLFKLL 681          
BLAST of mRNA_H-elongata_contig7876.15544.1 vs. uniprot
Match: A0A6H5L9D6_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9D6_9PHAE)

HSP 1 Score: 152 bits (384), Expect = 5.450e-39
Identity = 93/260 (35.77%), Postives = 128/260 (49.23%), Query Frame = 0
Query:   13 ERWAWWFRTLLNAKSPTLGPNITEGFDQWPENTPLDIQRTMQELTGTIHSLATGKAVGPDGVSVELFNISLNDC--------SVSSLVLEGDEVPQQCRDA-----------------------------------------------------GFRPSRSTTDMVLVVRRLQKLARKKRIPLYACSIDLTKAADSVDRTLLLTVLACFGMPQKGITAIRQFYDDMRASVRSSDGVCSGWFSVGKDVCQGCVIAPPVRNI 211
            +RWA WFR LLN KSPT+  +  +   +WP   PLD   ++ E+   +  +A  KAVGPD +  EL  + L+          ++   V +  +VPQQ +DA                                                     GFRP RST DM+  ++RL +LARKK   ++AC +DLTKA DSVDR LL  VL  FG+P K +  IR F++ MRA VR+ DG  S WF VG+ + QGC +AP + N+
Sbjct:   63 QRWARWFRKLLNTKSPTIDLHAADKVKRWPTCVPLDDIPSLLEVEEAVREMANRKAVGPDDLPAELIKLFLDGDQGLLREFHAIVVDVWQTGDVPQQWKDATIKVLFKKGDTMECGNYRGISLVALFGKVLLKVVATRLSHYCEREGILPEEQSGFRPHRSTLDMLFAIQRLHELARKKSTAVFACFVDLTKAYDSVDRDLLWDVLGRFGVPPKMLAVIRHFHEGMRARVRTDDGQYSEWFDVGQGLRQGCNLAPLLFNL 322          
BLAST of mRNA_H-elongata_contig7876.15544.1 vs. uniprot
Match: A0A6H5J8S3_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8S3_9PHAE)

HSP 1 Score: 145 bits (366), Expect = 1.030e-38
Identity = 104/279 (37.28%), Postives = 132/279 (47.31%), Query Frame = 0
Query:    1 DGILLRGVELICERWAWWFRTLLNAKSPTLGPNITEGFDQWPENTPLDIQRT-----MQELTGTIHSLATGKAVGPDGVSVELFNISLND--------------------------CSVSSLVLEGD-----------------EVP--------------------QQCRDAGFRPSRSTTDMVLVVRRLQKLARKKRIPLYACSIDLTKAADSVDRTLLLTVLACFGMPQKGITAIRQFYDDMRASVRSSDGVCSGWFSVGKDVCQGCVIAPPVRNI 211
            +G+LL   + I +RWA +F T LN KSPTL P+I E   Q P     D QR      ++E+      L   KA G D +  EL  I  ++                           ++  L   GD                 +VP                    +QC   GFRP RST DM+ VVRRLQ+L R+K+IPLY C +DL KA DSVDR +L  VLA  G+P K I  IRQF+D MRA VR  DG  S WF V + V QGCV++P + NI
Sbjct:   29 NGVLLLNRDDILQRWARFFSTPLNTKSPTLNPDIIERVTQRPATR--DTQRLGDVPELEEVARATKGLKNWKAPGHDSLPAELLKIDDDEPFVLGHLHTILVKGWNGGDIPRVWKNATIKVLYKNGDRSNCNNYRGISLLSHVGKVPIKIITNRLSAFCEANNILPEEQC---GFRPGRSTVDMLFVVRRLQELGRRKKIPLYMCFVDLNKAYDSVDREMLWKVLARAGIPAKLIEVIRQFHDGMRARVRMDDGELSDWFFVTQGVRQGCVLSPLLFNI 302          
BLAST of mRNA_H-elongata_contig7876.15544.1 vs. uniprot
Match: A0A6H5JBD7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBD7_9PHAE)

HSP 1 Score: 151 bits (381), Expect = 1.320e-38
Identity = 106/279 (37.99%), Postives = 134/279 (48.03%), Query Frame = 0
Query:    1 DGILLRGVELICERWAWWFRTLLNAKSPTLGPNITEGFDQWPENTPLDIQRT-----MQELTGTIHSLATGKAVGPDGVSVEL--------------------------FNISLNDCSVSSLVLEGD-----------------EVP--------------------QQCRDAGFRPSRSTTDMVLVVRRLQKLARKKRIPLYACSIDLTKAADSVDRTLLLTVLACFGMPQKGITAIRQFYDDMRASVRSSDGVCSGWFSVGKDVCQGCVIAPPVRNI 211
            DG+LLR  + I +RWA +F TLLN KSPTL P+I E   Q       D QR      ++E+      L   KA G D +  EL                          F +   D +++ L  +GD                 +VP                    +QC   GFRP RST DM+ VVRRLQ+L R+K+IPLY C +DL KA DSVDR +L  VLA  G+P K I  IRQF+D MRA VR  DG  S W  V + V QGCV++P + NI
Sbjct:  499 DGVLLRNRDDILQRWARFFSTLLNTKSPTLNPDIIERVTQ--RQATRDTQRLGDVPKLEEVARATKGLKNWKAPGHDSLPAELLKIDDDEPFVLGHLHTILVKVWNGGDFPLEWKDATITVLYNKGDRSNCNNYRRISLLSHVGKVPIKIITNRLSAFGEANNILPEEQC---GFRPGRSTVDMLFVVRRLQELGRRKKIPLYMCFVDLNKAYDSVDREMLWKVLARAGIPAKLIEVIRQFHDGMRARVRMDDGELSDWLFVTQRVRQGCVLSPLLFNI 772          
BLAST of mRNA_H-elongata_contig7876.15544.1 vs. uniprot
Match: A0A6H5JVL0_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVL0_9PHAE)

HSP 1 Score: 147 bits (372), Expect = 1.500e-38
Identity = 102/273 (37.36%), Postives = 132/273 (48.35%), Query Frame = 0
Query:    1 DGILLRGVELICERWAWWFRTLLNAKSPTLGPNITEGFDQWPENTPLDIQRT-----MQELTGTIHSLATGKAVGPDGVSVELFNISLNDCSV-----SSLVLEGDEVPQQCRDA----------------------------------------------------GFRPSRSTTDMVLVVRRLQKLARKKRIPLYACSIDLTKAADSVDRTLLLTVLACFGMPQKGITAIRQFYDDMRASVRSSDGVCSGWFSVGKDVCQGCVIAPPVRNI 211
            +G+LLR  + I +RWA +F TLLN KSPTL P+I E   Q P     D QR      ++E+      L   KA G D +  EL  I  ++  V     +  V  G ++ ++ +DA                                                    GFRP RST DM+ VVRRLQ+L R+K+IPLY C +DL KA DSVDR +L  VLA  G+  K I  IRQF+D MRA VR  DG  S WF V +   QGCV++P + NI
Sbjct:   29 NGVLLRNRDDILQRWARFFSTLLNTKSPTLNPDIIERVTQRPATR--DTQRLGDVPELEEVARATKDLKNWKAPGHDSLPAELLKIDDDEPFVLGHLHTIKVWNGGDILREWKDATIKVLYKGDRSNCNNYGGISLLSHVGKVPIMIITNRLSAFCEANNILPEEQCGFRPGRSTVDMLFVVRRLQELGRRKKIPLYMCFVDLNKAYDSVDREMLWKVLARAGISAKLIEVIRQFHDGMRARVRMDDGELSDWFFVTQGERQGCVLSPLLFNI 299          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7876.15544.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JQV7_9PHAE6.990e-4138.04Reverse transcriptase domain-containing protein n=... [more]
A0A6H5J7L3_9PHAE1.230e-4037.68Reverse transcriptase domain-containing protein (F... [more]
A0A6H5K3W7_9PHAE2.370e-4037.68Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KHS8_9PHAE3.340e-4039.09Reverse transcriptase domain-containing protein n=... [more]
A0A6H5J7A9_9PHAE3.380e-4037.96Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KA63_9PHAE5.130e-4039.24Reverse transcriptase domain-containing protein n=... [more]
A0A6H5L9D6_9PHAE5.450e-3935.77Reverse transcriptase domain-containing protein n=... [more]
A0A6H5J8S3_9PHAE1.030e-3837.28Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JBD7_9PHAE1.320e-3837.99Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JVL0_9PHAE1.500e-3837.36Reverse transcriptase domain-containing protein n=... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000477Reverse transcriptase domainPFAMPF00078RVT_1coord: 106..210
e-value: 9.5E-11
score: 41.6
NoneNo IPR availablePANTHERPTHR19446:SF411coord: 94..206
NoneNo IPR availablePANTHERPTHR19446REVERSE TRANSCRIPTASEScoord: 94..206

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig7876contigH-elongata_contig7876:1453..2192 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig7876.15544.1mRNA_H-elongata_contig7876.15544.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig7876 1453..2192 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig7876.15544.1 ID=prot_H-elongata_contig7876.15544.1|Name=mRNA_H-elongata_contig7876.15544.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=212bp
DGILLRGVELICERWAWWFRTLLNAKSPTLGPNITEGFDQWPENTPLDIQ
RTMQELTGTIHSLATGKAVGPDGVSVELFNISLNDCSVSSLVLEGDEVPQ
QCRDAGFRPSRSTTDMVLVVRRLQKLARKKRIPLYACSIDLTKAADSVDR
TLLLTVLACFGMPQKGITAIRQFYDDMRASVRSSDGVCSGWFSVGKDVCQ
GCVIAPPVRNIL
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom