mRNA_H-elongata_contig78737.15540.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig78737.15540.1
Unique NamemRNA_H-elongata_contig78737.15540.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig78737.15540.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig78737contigH-elongata_contig78737:660..1089 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size430
Cds size342
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig78737.15540.1prot_H-elongata_contig78737.15540.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig78737 666..1007 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931192.1466622-UTR-H-elongata_contig78737:659..6651622931192.1466622-UTR-H-elongata_contig78737:659..665Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig78737 660..665 +
1691679735.649417-UTR-H-elongata_contig78737:659..6651691679735.649417-UTR-H-elongata_contig78737:659..665Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig78737 660..665 +
1622931192.177312-UTR-H-elongata_contig78737:1007..10891622931192.177312-UTR-H-elongata_contig78737:1007..1089Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig78737 1008..1089 +
1691679735.6693978-UTR-H-elongata_contig78737:1007..10891691679735.6693978-UTR-H-elongata_contig78737:1007..1089Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig78737 1008..1089 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931192.1624248-CDS-H-elongata_contig78737:665..10071622931192.1624248-CDS-H-elongata_contig78737:665..1007Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78737 666..1007 +
1691679735.6583424-CDS-H-elongata_contig78737:665..10071691679735.6583424-CDS-H-elongata_contig78737:665..1007Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78737 666..1007 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig78737.15540.1

>prot_H-elongata_contig78737.15540.1 ID=prot_H-elongata_contig78737.15540.1|Name=mRNA_H-elongata_contig78737.15540.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=114bp
MSFQETKTATDAPEYHEDSSVASISPVVVNRKLLGLEVEPRKRWKSENKN
RTSSSGGCGKSGRGFEGYERRRVRLIADAANIDGNCLDAMSRMLVVVTSV
QAIEVLKVGHHIA*
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mRNA from alignment at H-elongata_contig78737:660..1089+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig78737.15540.1 ID=mRNA_H-elongata_contig78737.15540.1|Name=mRNA_H-elongata_contig78737.15540.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=430bp|location=Sequence derived from alignment at H-elongata_contig78737:660..1089+ (Himanthalia elongata Himel1 dioecious)
GCTCCGATGTCTTTCCAGGAGACGAAAACTGCCACGGATGCGCCCGAGTA
TCATGAAGACAGCAGCGTTGCATCCATTAGTCCAGTCGTTGTTAATCGAA
AACTTCTAGGGCTCGAAGTGGAGCCGAGAAAGCGTTGGAAATCAGAGAAC
AAGAACAGAACATCCAGCAGTGGTGGCTGCGGGAAGAGTGGAAGGGGTTT
TGAGGGGTATGAGCGGCGCCGAGTGCGCTTGATCGCGGACGCAGCAAATA
TTGACGGGAATTGCCTTGATGCGATGTCTCGTATGTTGGTGGTCGTGACA
TCCGTTCAGGCTATCGAGGTGTTGAAGGTGGGCCACCATATTGCCTGAAT
TTAAGAGGAGGACATCGAGATAAGGAGAGTAAAATATTTCCTTCGCGAGG
CGTACGCATCTATCTCGCTCCGTGTGTCGG
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Coding sequence (CDS) from alignment at H-elongata_contig78737:660..1089+

>mRNA_H-elongata_contig78737.15540.1 ID=mRNA_H-elongata_contig78737.15540.1|Name=mRNA_H-elongata_contig78737.15540.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=684bp|location=Sequence derived from alignment at H-elongata_contig78737:660..1089+ (Himanthalia elongata Himel1 dioecious)
ATGTCTTTCCAGGAGACGAAAACTGCCACGGATGCGCCCGAGTATCATGA
AGACAGCAGCGTTGCATCCATTAGTCCAGTCGTTGTTAATCGAAAACTTC
TAGGGCTCGAAGTGGAGCCGAGAAAGCGTTGGAAATCAGAGAACAAGAAC
AGAACATCCAGCAGTGGTGGCTGCGGGAAGAGTGGAAGGGGTTTTGAGGG
GTATGAGCGGCGCCGAGTGCGCTTGATCGCGGACGCAGCAAATATTGACG
GGAATTGCCTTGATGCGATGTCTCGTATGTTGGTGGTCGTGACATCCGTT
CAGGCTATCGAGGTGTTGAAGGTGGGCCACCATATTGCCTGAATGTCTTT
CCAGGAGACGAAAACTGCCACGGATGCGCCCGAGTATCATGAAGACAGCA
GCGTTGCATCCATTAGTCCAGTCGTTGTTAATCGAAAACTTCTAGGGCTC
GAAGTGGAGCCGAGAAAGCGTTGGAAATCAGAGAACAAGAACAGAACATC
CAGCAGTGGTGGCTGCGGGAAGAGTGGAAGGGGTTTTGAGGGGTATGAGC
GGCGCCGAGTGCGCTTGATCGCGGACGCAGCAAATATTGACGGGAATTGC
CTTGATGCGATGTCTCGTATGTTGGTGGTCGTGACATCCGTTCAGGCTAT
CGAGGTGTTGAAGGTGGGCCACCATATTGCCTGA
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