prot_H-elongata_contig78677.15538.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig78677.15538.1
Unique Name	prot_H-elongata_contig78677.15538.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	152

Homology

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BLAST of mRNA_H-elongata_contig78677.15538.1 vs. uniprot
Match: UPI000C20B82D (zinc finger BED domain-containing protein 1-like n=2 Tax=Onthophagus taurus TaxID=166361 RepID=UPI000C20B82D)

HSP 1 Score: 57.0 bits (136), Expect = 1.360e-6
Identity = 46/150 (30.67%), Postives = 72/150 (48.00%), Query Frame = 0

Query:    1 CATHCLEPTAGKTFASDQVFGIFNRCRKIVTRYTGS-IQLEEWLLMFCTSQTPKVAVLKVIQGVVTRWWSIHDMCDRMVVL-GPAIRAQERAEQAPLLLIALNWEILVGIVLVLKPFKQLQNVLEGSAYVT-SCFIGLISNLCDKLKAAV 147
            C T  L+ T       + V  +  +CR +V  +  S +  E+   M      P+   LKV Q V TRW S   M +R++ +  P   A     +AP  + A  W++L+ +V +LKPF+++   L G  Y+T S  I LI  L   LK+ +
Sbjct:  300 CVTDALKST-------EPVMRLIKKCRALVAHFKHSTVACEKLKSMQKQMLYPE---LKVKQDVSTRWNSTLIMAERLLAIKDPLSAAITSLPRAPEFITATEWDLLIDVVSILKPFEKITIELSGEKYITMSLIIPLIRCLQHSLKSRI 439

[Close]

BLAST of mRNA_H-elongata_contig78677.15538.1 vs. uniprot
Match: UPI00084F0C70 (zinc finger BED domain-containing protein 4-like n=1 Tax=Trachymyrmex cornetzi TaxID=471704 RepID=UPI00084F0C70)

HSP 1 Score: 52.8 bits (125), Expect = 3.160e-5
Identity = 46/147 (31.29%), Postives = 66/147 (44.90%), Query Frame = 0

Query:    1 CATHCLEPTAGKTFAS-DQVFGIFNRCRKIVTRYTGSIQLEEWLLMFCTSQTPKVAVLKVIQGVVTRWWSIHDMCDRMVVLGPAIRAQERAEQAPLLLIALNWEILVGIVLVLKPFKQLQNVLEGSAYVT-SCFIGLISNLCDKLKA 145
            C  H L   A     + D +  +  +CR IV  +  S    E LL     +   V  L + + V TRW S + M  R++ L   + A   A +   L+    WE++VGIV VLKP  Q    + G  YVT S  I ++  +   LKA
Sbjct:   36 CFAHTLNLVAQSALKNIDSIVNVLQKCRNIVIVFKNSNTTAE-LLRKEQIRQGIVTPLSLKRDVPTRWNSTYLMLSRIIELRNILPAVLTARKDVSLIAYEEWEMIVGIVNVLKPVYQATKEMSGEHYVTISKVIPILGCINSALKA 181

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig78677.15538.1 vs. uniprot

BLAST of mRNA_H-elongata_contig78677.15538.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
UPI000C20B82D	1.360e-6	30.67	zinc finger BED domain-containing protein 1-like n...	[more]
UPI00084F0C70	3.160e-5	31.29	zinc finger BED domain-containing protein 4-like n...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..92
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 141..152
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 124..140
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 93..112
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 113..123
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 1..136

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig78677	contig	H-elongata_contig78677:1781..2236 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig78677.15538.1	mRNA_H-elongata_contig78677.15538.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig78677 1781..2236 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig78677.15538.1 ID=prot_H-elongata_contig78677.15538.1|Name=mRNA_H-elongata_contig78677.15538.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=152bp
CATHCLEPTAGKTFASDQVFGIFNRCRKIVTRYTGSIQLEEWLLMFCTSQ
TPKVAVLKVIQGVVTRWWSIHDMCDRMVVLGPAIRAQERAEQAPLLLIAL
NWEILVGIVLVLKPFKQLQNVLEGSAYVTSCFIGLISNLCDKLKAAVKLF
QD

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR012337	RNaseH-like_sf