mRNA_H-elongata_contig78668.15537.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig78668.15537.1
Unique NamemRNA_H-elongata_contig78668.15537.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig78668.15537.1 vs. uniprot
Match: D7G535_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G535_ECTSI)

HSP 1 Score: 165 bits (418), Expect = 6.970e-46
Identity = 75/89 (84.27%), Postives = 83/89 (93.26%), Query Frame = 1 
Query:    1 SGVFVMTGIICHEIAGPAAFLSWLIAGLGCLLSALSFAELSWRIPSAGGAYAYTFVALGELPASIVGWCMTLEYGVSGAAVAKSWGEMV 267
            SGVFVM+G+ICHEIAGPA   SW+IAG GCLLS +SFAELSWR+PSAGGAYAYTFVALGELPA+IVGWCMTLEYG+S AAVAKSWGEM+
Sbjct:   80 SGVFVMSGLICHEIAGPAGMFSWMIAGFGCLLSGMSFAELSWRVPSAGGAYAYTFVALGELPAAIVGWCMTLEYGISAAAVAKSWGEML 168
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BLAST of mRNA_H-elongata_contig78668.15537.1 vs. uniprot
Match: A0A7R9UE61_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UE61_9STRA)

HSP 1 Score: 135 bits (339), Expect = 3.050e-35
Identity = 58/90 (64.44%), Postives = 76/90 (84.44%), Query Frame = 1 
Query:    1 SGVFVMTGIICHEIAGPAAFLSWLIAGLGCLLSALSFAELSWRIPSAGGAYAYTFVALGELPASIVGWCMTLEYGVSGAAVAKSWGEMVI 270
            SGVFV+ G+I HE AGPA  LSWL AG GC+LS +++AE+S R+PSAG +YAYT+VALGELPA + GWC+TLEYG+S +A+A+SWG+ +I
Sbjct:   68 SGVFVLCGLIAHEYAGPAVVLSWLTAGFGCVLSGMNYAEMSSRVPSAGSSYAYTYVALGELPAVVAGWCLTLEYGISASAIARSWGDKMI 157
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BLAST of mRNA_H-elongata_contig78668.15537.1 vs. uniprot
Match: A0A835ZA89_9STRA (Amino acid permease-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZA89_9STRA)

HSP 1 Score: 128 bits (322), Expect = 1.340e-32
Identity = 56/87 (64.37%), Postives = 73/87 (83.91%), Query Frame = 1 
Query:    1 SGVFVMTGIICHEIAGPAAFLSWLIAGLGCLLSALSFAELSWRIPSAGGAYAYTFVALGELPASIVGWCMTLEYGVSGAAVAKSWGE 261
            SGVFVM G+I  E+AGPA   SWL+AGLGCLLS ++FAE+S  +PSAG AYAY +VALGELPA ++ WC++LEYG+S AA+A++WG+
Sbjct:   75 SGVFVMCGLIGGEVAGPAGVFSWLVAGLGCLLSGVAFAEMSSLVPSAGSAYAYAYVALGELPAVVIAWCLSLEYGISSAAIARNWGD 161
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BLAST of mRNA_H-elongata_contig78668.15537.1 vs. uniprot
Match: A0A7S2Q307_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2Q307_9STRA)

HSP 1 Score: 117 bits (293), Expect = 1.880e-30
Identity = 53/90 (58.89%), Postives = 71/90 (78.89%), Query Frame = 1 
Query:    1 SGVFVMTGIICHEIAGPAAFLSWLIAGLGCLLSALSFAELSWRIPSAGGAYAYTFVALGELPASIVGWCMTLEYGVSGAAVAKSWGEMVI 270
            SG+FV+ G+I H  AGPA F+SW+++G+  LLS   +AELS RIPSAG +YAY FVALGELPA I  + +TLE+ +SG+AVA+SWG+ V+
Sbjct:  106 SGIFVLNGLIAHSYAGPATFISWIVSGIAALLSGCCYAELSGRIPSAGSSYAYAFVALGELPAFITAFMLTLEFLLSGSAVARSWGDKVV 195
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BLAST of mRNA_H-elongata_contig78668.15537.1 vs. uniprot
Match: D8LQA2_ECTSI (Cationic amino acid transporter-like protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQA2_ECTSI)

HSP 1 Score: 122 bits (305), Expect = 2.510e-30
Identity = 53/90 (58.89%), Postives = 71/90 (78.89%), Query Frame = 1 
Query:    1 SGVFVMTGIICHEIAGPAAFLSWLIAGLGCLLSALSFAELSWRIPSAGGAYAYTFVALGELPASIVGWCMTLEYGVSGAAVAKSWGEMVI 270
            SG+F + G+I    AGPAA +SW++AG+GC+ S LS+AELS  IPS GG YAY FVALGELPA +  WC+TLE+G+SGAAVA++W + ++
Sbjct:   66 SGIFAIVGLIGSTYAGPAAVVSWVLAGIGCVFSGLSYAELSSIIPSEGGTYAYAFVALGELPAIVTAWCLTLEFGISGAAVARAWADKIV 155
[Close]
BLAST of mRNA_H-elongata_contig78668.15537.1 vs. uniprot
Match: A0A2P4XYY0_9STRA (Amino Acid-Polyamine-Organocation (APC) Family (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XYY0_9STRA)

HSP 1 Score: 112 bits (279), Expect = 5.510e-29
Identity = 53/89 (59.55%), Postives = 66/89 (74.16%), Query Frame = 1 
Query:    1 SGVFVMTGIICHEIAGPAAFLSWLIAGLGCLLSALSFAELSWRIPSAGGAYAYTFVALGELPASIVGWCMTLEYGVSGAAVAKSWGEMV 267
            SGVF  TG I    AGPAAF+SW+IAG+ C ++AL++ EL  R+PS+G  YAY+F ALGELPA I  W +TLEYGVSG+ VA+SW   V
Sbjct:   49 SGVFSTTGEIISGTAGPAAFISWIIAGVVCCINALAYMELVTRVPSSGSTYAYSFYALGELPAVIAAWLLTLEYGVSGSGVARSWASKV 137
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BLAST of mRNA_H-elongata_contig78668.15537.1 vs. uniprot
Match: A0A7S2LCT3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LCT3_9STRA)

HSP 1 Score: 109 bits (273), Expect = 1.440e-28
Identity = 50/90 (55.56%), Postives = 68/90 (75.56%), Query Frame = 1 
Query:    1 SGVFVMTGIICHEIAGPAAFLSWLIAGLGCLLSALSFAELSWRIPSAGGAYAYTFVALGELPASIVGWCMTLEYGVSGAAVAKSWGEMVI 270
            SG+FV+ G+I    AGPA  LSWLIAG+  +LS   +AEL+ RIP++G +YAY ++++GELPA I   C+TLEY VS AAVA+SWG+ V+
Sbjct:    5 SGIFVLCGLIARNYAGPATCLSWLIAGIASILSGACYAELAGRIPASGSSYAYAYISMGELPAVIAAACLTLEYLVSSAAVARSWGDKVV 94
[Close]
BLAST of mRNA_H-elongata_contig78668.15537.1 vs. uniprot
Match: B8BQ56_THAPS (Amino acid transporter (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BQ56_THAPS)

HSP 1 Score: 115 bits (289), Expect = 1.680e-28
Identity = 53/90 (58.89%), Postives = 70/90 (77.78%), Query Frame = 1 
Query:    1 SGVFVMTGIICHEIAGPAAFLSWLIAGLGCLLSALSFAELSWRIPSAGGAYAYTFVALGELPASIVGWCMTLEYGVSGAAVAKSWGEMVI 270
            SG+FV+ G+I H  AGPA F+SW+I+G   LLS   +AELS RIPSAG +YAY +VALGELPA +V   +TLE+ +SG+AVA+SWG+ V+
Sbjct:   17 SGIFVLNGLIAHSYAGPATFISWIISGFAALLSGCCYAELSGRIPSAGSSYAYAYVALGELPAFVVAGMLTLEFLLSGSAVARSWGDKVV 106
[Close]
BLAST of mRNA_H-elongata_contig78668.15537.1 vs. uniprot
Match: A0A484DZC6_BRELC (AA_permease_C domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DZC6_BRELC)

HSP 1 Score: 115 bits (287), Expect = 6.800e-28
Identity = 57/87 (65.52%), Postives = 65/87 (74.71%), Query Frame = 1 
Query:    1 SGVFVMTGIICHEIAGPAAFLSWLIAGLGCLLSALSFAELSWRIPSAGGAYAYTFVALGELPASIVGWCMTLEYGVSGAAVAKSWGE 261
            SGVF  +G+I    AGPAA LSWL+AG GCLLS LSF ELS  IPSAG +YAY + ALGELPA I G+ +TLEYGVS A  A+SW E
Sbjct:   51 SGVFATSGLIASSYAGPAATLSWLLAGAGCLLSGLSFMELSCLIPSAGSSYAYAYHALGELPALIAGFLLTLEYGVSSAGAARSWSE 137
[Close]
BLAST of mRNA_H-elongata_contig78668.15537.1 vs. uniprot
Match: A0A662X6M4_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X6M4_9STRA)

HSP 1 Score: 110 bits (275), Expect = 1.350e-27
Identity = 52/89 (58.43%), Postives = 66/89 (74.16%), Query Frame = 1 
Query:    1 SGVFVMTGIICHEIAGPAAFLSWLIAGLGCLLSALSFAELSWRIPSAGGAYAYTFVALGELPASIVGWCMTLEYGVSGAAVAKSWGEMV 267
            SGVF  TG I    AGPAAF+SW+IAG+ C ++AL++ EL  R+PS+G  YAY+F ALGELPA +  W +TLEYGVSG+ VA+SW   V
Sbjct:   49 SGVFSTTGDIISGTAGPAAFVSWVIAGVVCCINALAYMELVTRVPSSGSTYAYSFYALGELPAVVAAWLLTLEYGVSGSGVARSWATKV 137
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig78668.15537.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G535_ECTSI6.970e-4684.27Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7R9UE61_9STRA3.050e-3564.44Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A835ZA89_9STRA1.340e-3264.37Amino acid permease-domain-containing protein n=1 ... [more]
A0A7S2Q307_9STRA1.880e-3058.89Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]
D8LQA2_ECTSI2.510e-3058.89Cationic amino acid transporter-like protein n=2 T... [more]
A0A2P4XYY0_9STRA5.510e-2959.55Amino Acid-Polyamine-Organocation (APC) Family (Fr... [more]
A0A7S2LCT3_9STRA1.440e-2855.56Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
B8BQ56_THAPS1.680e-2858.89Amino acid transporter (Fragment) n=1 Tax=Thalassi... [more]
A0A484DZC6_BRELC6.800e-2865.52AA_permease_C domain-containing protein n=1 Tax=Br... [more]
A0A662X6M4_9STRA1.350e-2758.43Uncharacterized protein (Fragment) n=1 Tax=Nothoph... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig78668contigH-elongata_contig78668:1732..2394 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score156.0
Seed ortholog evalue8e-36
Seed eggNOG ortholog2880.D7G535
KEGG koko:K03294,ko:K13864
KEGG TC2.A.3.2,2.A.3.3.2
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0009507,GO:0009526,GO:0009536,GO:0009941,GO:0016020,GO:0031090,GO:0031967,GO:0031969,GO:0031975,GO:0042170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0098588,GO:0098805
EggNOG free text desc.amino acid transport
EggNOG OGsCOG0531@1,KOG1286@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Hectar predicted targeting categorysignal peptide
Exons2
Model size273
Cds size258
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig78668.15537.1prot_H-elongata_contig78668.15537.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig78668 1747..2394 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931191.9747386-UTR-H-elongata_contig78668:1731..17461622931191.9747386-UTR-H-elongata_contig78668:1731..1746Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig78668 1732..1746 +
1691679735.5875435-UTR-H-elongata_contig78668:1731..17461691679735.5875435-UTR-H-elongata_contig78668:1731..1746Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig78668 1732..1746 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931191.9910889-CDS-H-elongata_contig78668:1746..18771622931191.9910889-CDS-H-elongata_contig78668:1746..1877Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78668 1747..1877 +
1691679735.6017632-CDS-H-elongata_contig78668:1746..18771691679735.6017632-CDS-H-elongata_contig78668:1746..1877Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78668 1747..1877 +
1622931192.004396-CDS-H-elongata_contig78668:2267..23941622931192.004396-CDS-H-elongata_contig78668:2267..2394Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78668 2268..2394 +
1691679735.6121142-CDS-H-elongata_contig78668:2267..23941691679735.6121142-CDS-H-elongata_contig78668:2267..2394Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78668 2268..2394 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig78668.15537.1

>prot_H-elongata_contig78668.15537.1 ID=prot_H-elongata_contig78668.15537.1|Name=mRNA_H-elongata_contig78668.15537.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=86bp
MTGIICHEIAGPAAFLSWLIAGLGCLLSALSFAELSWRIPSAGGAYAYTF
VALGELPASIVGWCMTLEYGVSGAAVAKSWGEMVI*
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mRNA from alignment at H-elongata_contig78668:1732..2394+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig78668.15537.1 ID=mRNA_H-elongata_contig78668.15537.1|Name=mRNA_H-elongata_contig78668.15537.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=663bp|location=Sequence derived from alignment at H-elongata_contig78668:1732..2394+ (Himanthalia elongata Himel1 dioecious)
AGTGGCGTATTTGTGATGACCGGAATCATCTGCCACGAGATAGCGGGTCC
AGCCGCGTTCCTTTCTTGGCTTATCGCGGGCTTGGGGTGTCTCCTTAGCG
CGCTATCATTCGCGGAACTTTCCTGGAGAATTCCTTCTGCGGGCGGGTGA
GTGTGCCGCTCGAAAAATCCTGCTACAACGCGGTGGCAAACGACACCCTT
TCGCGAGTTTTTTCTCGGGGTTTTAATTATTTGGATGAGGAACGTCCCAT
ATGTAGACGAATTCTGTGGTGCAGCGTTCAAACCTTCCCACGCCCCCTTT
TCTCCCTCTTTTTATTTCGTCGACTCAAGGGGACCTAACTTCCAGCGTCG
CTCTACACAAGTCCTCGTTTCGAACCACTTTCCCCTTCAAGGTAGTATAT
TATTTCAGAGGAGCCCTTCGCTCGGCCGGGCAGTTCTGGAACACGTCGCG
CTATCATTTGCGAAGCTTTTCTTTTTCTTGTACGCCACTCGTCACCTCTC
CACCACCATTCGATGCTCTTAATCGGTATGAAACAGGGCTTACGCTTACA
CCTTTGTCGCGCTGGGGGAGCTGCCCGCCTCAATCGTTGGGTGGTGCATG
ACCCTAGAGTACGGCGTTTCGGGGGCAGCCGTGGCCAAGAGCTGGGGCGA
AATGGTGATTTGA
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Coding sequence (CDS) from alignment at H-elongata_contig78668:1732..2394+

>mRNA_H-elongata_contig78668.15537.1 ID=mRNA_H-elongata_contig78668.15537.1|Name=mRNA_H-elongata_contig78668.15537.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=516bp|location=Sequence derived from alignment at H-elongata_contig78668:1732..2394+ (Himanthalia elongata Himel1 dioecious)
ATGACCGGAATCATCTGCCACGAGATAGCGGGTCCAGCCGCGTTCCTTTC
TTGGCTTATCGCGGGCTTGGGGTGTCTCCTTAGCGCGCTATCATTCGCGG
AACTTTCCTGGAGAATTCCTTCTGCGGGCGGATGACCGGAATCATCTGCC
ACGAGATAGCGGGTCCAGCCGCGTTCCTTTCTTGGCTTATCGCGGGCTTG
GGGTGTCTCCTTAGCGCGCTATCATTCGCGGAACTTTCCTGGAGAATTCC
TTCTGCGGGCGGGGCTTACGCTTACACCTTTGTCGCGCTGGGGGAGCTGC
CCGCCTCAATCGTTGGGTGGTGCATGACCCTAGAGTACGGCGTTTCGGGG
GCAGCCGTGGCCAAGAGCTGGGGCGAAATGGTGATTTGAGGCTTACGCTT
ACACCTTTGTCGCGCTGGGGGAGCTGCCCGCCTCAATCGTTGGGTGGTGC
ATGACCCTAGAGTACGGCGTTTCGGGGGCAGCCGTGGCCAAGAGCTGGGG
CGAAATGGTGATTTGA
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