mRNA_H-elongata_contig78608.15535.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig78608.15535.1
Unique NamemRNA_H-elongata_contig78608.15535.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig78608.15535.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig78608contigH-elongata_contig78608:203..2190 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size263
Cds size237
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig78608.15535.1prot_H-elongata_contig78608.15535.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig78608 228..2190 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931191.56753-UTR-H-elongata_contig78608:202..2271622931191.56753-UTR-H-elongata_contig78608:202..227Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig78608 203..227 +
1691679735.4083188-UTR-H-elongata_contig78608:202..2271691679735.4083188-UTR-H-elongata_contig78608:202..227Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig78608 203..227 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931191.5813174-CDS-H-elongata_contig78608:227..2591622931191.5813174-CDS-H-elongata_contig78608:227..259Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78608 228..259 +
1691679735.417265-CDS-H-elongata_contig78608:227..2591691679735.417265-CDS-H-elongata_contig78608:227..259Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78608 228..259 +
1622931191.5950353-CDS-H-elongata_contig78608:1985..21901622931191.5950353-CDS-H-elongata_contig78608:1985..2190Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78608 1986..2190 +
1691679735.4305556-CDS-H-elongata_contig78608:1985..21901691679735.4305556-CDS-H-elongata_contig78608:1985..2190Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78608 1986..2190 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig78608.15535.1

>prot_H-elongata_contig78608.15535.1 ID=prot_H-elongata_contig78608.15535.1|Name=mRNA_H-elongata_contig78608.15535.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=79bp
MLQDPGGRPFWWNFKTGDWEYHTPIAPSSYYPFTPPWALCGHLLPTPGYP
IYIATPGLYPTAQQQCLVSPSPSSVAMPW
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mRNA from alignment at H-elongata_contig78608:203..2190+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig78608.15535.1 ID=mRNA_H-elongata_contig78608.15535.1|Name=mRNA_H-elongata_contig78608.15535.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1988bp|location=Sequence derived from alignment at H-elongata_contig78608:203..2190+ (Himanthalia elongata Himel1 dioecious)
GGAGGATGCCACGGCCTCGTGGGTGATGCTACAGGATCCTGGAGGTCGAC
CGTTCTGGTGAGTGCGCTATCATTATCGCTTTCTCTCGAAACAGACTGAG
AAGAAGAACGGTCGTCCCTGAACCCTATTATTAGTATTATTATTATTATC
GCTGGATATCAAATGAAAGGACAGTATTATAATACTTCGGTATTACTTAG
TAAATAAAGGTTATTAATAGTACAAAACAGTAGATACGGTGCAGAAGATT
AGCGTTCCCGCATACATAGATATTGTATCTTACCTGGGACACGCCTATTA
TACCACTGGAGGAAGAAGGGTTGGGTATCCCTTCAAGTGGGTACAAATTT
TCCAATCGCAGGAGGATGGCGTACAAATTGAAAGCCTGGTGGGCTGAGAA
ATATACTTTGGTTCTTGCTTTTTTTCCCCGTAAAACTATTCAAACTCAAG
GAAAACTTCCGAACTTCCACGGGCGCGCCTATTTACACCCCACATGATGG
GTGTTTACGTCGAACCACCACCCAAGCATGTATGTATGTGATGAAATCCC
AGGGAAACTACAACCCAGCGAGCTCTGAAGTTTTTGGTGGACCCAACCCG
ACCCTAACCCTAACCCAAACTCACCCCCAAATAAAAGTTTACTGCTACTA
CAGCTGCTGGGCTGAGACTATAACGAAAATTGGCTACATATATAGGTTTC
AGAGAGACCGCTGCTGTTTTAGCTAACATTAAATCACCATATTTTGCTGA
TTATAAATAATTATAAGAAATTTTGGCAAAAGAGAACCTGTCTCGTGCTT
GGGTGGTGGTTCGATGTAAACACCCATGGGGTGTAAATAGGCGCACCCGA
ACTTCCACACCCACCATACTCTGAAGAAATAGAGAAGATGTAAGGCCTGG
GAAAGGAGCGTTTAACTTTTCACTGGCTGATTGACCATATATTATCCTTT
TCTAGCATTATTATTATTATTACAGTATAGGGGCTATCTTGATTGGTACT
ATTGGAAAAATAGAAAATGAAGGAATATTATAATAAAATAATAATGCCTC
AAAAAAACGAATTCTCCAAAAAATAAGACAAAGTATTACAAAGGGTTAGT
CATAGACTAGGGAAACAATGTGACAACATACATACGCCTTGCGGAGCGCA
GAAGTGCGTAACATGGGTTTCGATAAAAAATGGCGCGTGGGAGATTAGGC
ATGTTCATCAGCGCTGCAGGTTGGAATGGGCGGCGTTGCGACATATAGAA
TTGGCAACAATCTAGCATATTAAATTGCTCAGTCGGCAAAACGTAATATC
AAATACGCTATCTAATGACGTCATAGCCCCATGTCTCATCAAGGGACATC
GGGCGTGCCATGTTTGATAAAATCGAACAAACATCGGGACAAATGGTAGT
TTGTCGTTGCCATAGATTTCGATCCTAGAGCGAGGTGTCAATATCTGCAC
CCAACTACAGAGTAGTTACCGACTAGCCCTCGTTATAATTTCAGTGGATA
TTCAACCAAGGCACGGCTGGGGAAGATGACGACGTCGTCCACTAATAAAG
CTCTATTATTGTGACTACTTGTCATGATACATTTTATAGGGGTTTATACT
ACTCAGGGTTGACATATATCAAGGAGTCGATCAAAGCTTACGCACTTGCG
AAGAATAAAATCGATTATTATGCGTCCTGCTGGAATATATCCTCACTTGT
GCTTGATTGCATGATGAACGTTGATGATGCAGTTTGAGCTTAACTAACCA
TACATTCGTCCGCCGACACGTACCCGACGACAGGTGGAACTTTAAGACAG
GTGACTGGGAATACCACACCCCGATTGCTCCGAGCTCCTACTACCCTTTC
ACGCCCCCGTGGGCTCTATGTGGTCATCTGCTTCCCACCCCTGGCTATCC
CATCTACATAGCCACCCCGGGCCTGTATCCCACTGCCCAACAGCAGTGCC
TCGTCTCTCCCTCGCCGTCGTCTGTAGCCATGCCTTGG
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Coding sequence (CDS) from alignment at H-elongata_contig78608:203..2190+

>mRNA_H-elongata_contig78608.15535.1 ID=mRNA_H-elongata_contig78608.15535.1|Name=mRNA_H-elongata_contig78608.15535.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=474bp|location=Sequence derived from alignment at H-elongata_contig78608:203..2190+ (Himanthalia elongata Himel1 dioecious)
ATGCTACAGGATCCTGGAGGTCGACCGTTCTGATGCTACAGGATCCTGGA
GGTCGACCGTTCTGGTGGAACTTTAAGACAGGTGACTGGGAATACCACAC
CCCGATTGCTCCGAGCTCCTACTACCCTTTCACGCCCCCGTGGGCTCTAT
GTGGTCATCTGCTTCCCACCCCTGGCTATCCCATCTACATAGCCACCCCG
GGCCTGTATCCCACTGCCCAACAGCAGTGCCTCGTCTCTCCCTCGCCGTC
GTCTGTAGCCATGCCTTGGGTGGAACTTTAAGACAGGTGACTGGGAATAC
CACACCCCGATTGCTCCGAGCTCCTACTACCCTTTCACGCCCCCGTGGGC
TCTATGTGGTCATCTGCTTCCCACCCCTGGCTATCCCATCTACATAGCCA
CCCCGGGCCTGTATCCCACTGCCCAACAGCAGTGCCTCGTCTCTCCCTCG
CCGTCGTCTGTAGCCATGCCTTGG
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