mRNA_H-elongata_contig78600.15534.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig78600.15534.1
Unique NamemRNA_H-elongata_contig78600.15534.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig78600.15534.1 vs. uniprot
Match: D7FU24_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FU24_ECTSI)

HSP 1 Score: 105 bits (261), Expect = 4.560e-28
Identity = 49/57 (85.96%), Postives = 52/57 (91.23%), Query Frame = 1 
Query:    1 GKPLLARHRMVNAALKEELVEDIHALSMATKTPAQWNAEGGKKIEPSPLCAGGSVSR 171
            GKPLLARHRMVNAALKEELVEDIHALSM T+TPAQW AEGG K+EP+P CAGGS SR
Sbjct:   50 GKPLLARHRMVNAALKEELVEDIHALSMTTRTPAQWAAEGGDKVEPTPPCAGGSTSR 106
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BLAST of mRNA_H-elongata_contig78600.15534.1 vs. uniprot
Match: D8LTH4_ECTSI (BolA protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTH4_ECTSI)

HSP 1 Score: 73.2 bits (178), Expect = 8.750e-15
Identity = 36/54 (66.67%), Postives = 40/54 (74.07%), Query Frame = 1 
Query:    1 GKPLLARHRMVNAALKEELVEDIHALSMATKTPAQWNAEGGKKIEPSPLCAGGS 162
            GKPLLARHRMVNA   EE+   +HALS+  KTPAQW AEG  K+ PSP C GGS
Sbjct:  113 GKPLLARHRMVNALFAEEMKGKMHALSIQGKTPAQWEAEG-HKVAPSPPCMGGS 165
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BLAST of mRNA_H-elongata_contig78600.15534.1 vs. uniprot
Match: G4ZLH3_PHYSP (Uncharacterized protein n=3 Tax=Phytophthora TaxID=4783 RepID=G4ZLH3_PHYSP)

HSP 1 Score: 69.7 bits (169), Expect = 7.990e-14
Identity = 32/56 (57.14%), Postives = 41/56 (73.21%), Query Frame = 1 
Query:    1 GKPLLARHRMVNAALKEELVEDIHALSMATKTPAQWNAEGGKKIEPSPLCAGGSVS 168
            GKPLL RHRMVNA L+EEL + +HALS+ +KTP QW A    +++PSP C GG  +
Sbjct:   59 GKPLLQRHRMVNAVLQEELNDGVHALSILSKTPKQWEANA--QVKPSPNCRGGMTT 112
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BLAST of mRNA_H-elongata_contig78600.15534.1 vs. uniprot
Match: A0A1V9Z5Q5_9STRA (BolA-like protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z5Q5_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 1.560e-13
Identity = 32/53 (60.38%), Postives = 38/53 (71.70%), Query Frame = 1 
Query:    1 GKPLLARHRMVNAALKEELVEDIHALSMATKTPAQWNAEGGKKIEPSPLCAGG 159
            GKPL+ RHRMVNA L+EEL   +HALS+ +KTPAQW  E    + PSP C GG
Sbjct:   71 GKPLIQRHRMVNAVLEEELNGGVHALSIQSKTPAQW--EANSTVRPSPTCQGG 121
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BLAST of mRNA_H-elongata_contig78600.15534.1 vs. uniprot
Match: A0A484DWY1_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DWY1_BRELC)

HSP 1 Score: 68.9 bits (167), Expect = 2.350e-13
Identity = 33/53 (62.26%), Postives = 40/53 (75.47%), Query Frame = 1 
Query:    1 GKPLLARHRMVNAALKEELVEDIHALSMATKTPAQWNAEGGKKIEPSPLCAGG 159
            GKPLL RHRMVN  LK+EL E +HALS+ +KTPAQWNA    +++ SP C GG
Sbjct:   76 GKPLLHRHRMVNDVLKQELEEGMHALSILSKTPAQWNANA--QVKSSPNCRGG 126
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BLAST of mRNA_H-elongata_contig78600.15534.1 vs. uniprot
Match: A0A6G0X0A1_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X0A1_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 2.850e-13
Identity = 32/55 (58.18%), Postives = 38/55 (69.09%), Query Frame = 1 
Query:    1 GKPLLARHRMVNAALKEELVEDIHALSMATKTPAQWNAEGGKKIEPSPLCAGGSV 165
            GKPL+ RHRMVN ALKEE    +HALS+ +KTPAQW  E    + PSP C GG +
Sbjct:   69 GKPLIQRHRMVNEALKEEFDMGVHALSIQSKTPAQW--EANNTVRPSPNCLGGML 121
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BLAST of mRNA_H-elongata_contig78600.15534.1 vs. uniprot
Match: A0A8K1FC65_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FC65_PYTOL)

HSP 1 Score: 67.8 bits (164), Expect = 3.950e-13
Identity = 32/53 (60.38%), Postives = 38/53 (71.70%), Query Frame = 1 
Query:    1 GKPLLARHRMVNAALKEELVEDIHALSMATKTPAQWNAEGGKKIEPSPLCAGG 159
            GKPLL RHRMVNA L+EEL + +HALS+  KTPAQW  E    ++ SP C GG
Sbjct:   55 GKPLLQRHRMVNAVLEEELAQGVHALSIQGKTPAQW--EQNNTVQASPSCLGG 105
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BLAST of mRNA_H-elongata_contig78600.15534.1 vs. uniprot
Match: UPI0014024C0E (bolA-like protein 1 n=1 Tax=Petromyzon marinus TaxID=7757 RepID=UPI0014024C0E)

HSP 1 Score: 68.2 bits (165), Expect = 5.440e-13
Identity = 31/54 (57.41%), Postives = 41/54 (75.93%), Query Frame = 1 
Query:    1 GKPLLARHRMVNAALKEELVEDIHALSMATKTPAQWNAEGGKKIEPSPLCAGGS 162
            G  LLARHR+VN AL++ELV  +HALS+  +TP QW + GG+ ++PSP C GGS
Sbjct:   90 GVSLLARHRLVNEALRDELVGCVHALSIQARTPEQWGSSGGR-VDPSPPCLGGS 142
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BLAST of mRNA_H-elongata_contig78600.15534.1 vs. uniprot
Match: A0A662WN87_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WN87_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 5.720e-13
Identity = 30/53 (56.60%), Postives = 41/53 (77.36%), Query Frame = 1 
Query:    1 GKPLLARHRMVNAALKEELVEDIHALSMATKTPAQWNAEGGKKIEPSPLCAGG 159
            GKPL+ RHR+VNA L++EL E +HALS+ +KTPAQW +    +++PSP C GG
Sbjct:   58 GKPLIQRHRLVNAVLQQELDEGVHALSIQSKTPAQWASNS--EVKPSPNCQGG 108
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BLAST of mRNA_H-elongata_contig78600.15534.1 vs. uniprot
Match: A0A3M6VVI5_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VVI5_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 5.860e-13
Identity = 30/56 (53.57%), Postives = 40/56 (71.43%), Query Frame = 1 
Query:    1 GKPLLARHRMVNAALKEELVEDIHALSMATKTPAQWNAEGGKKIEPSPLCAGGSVS 168
            GKPL+ RHRMVNA L++EL + +HALS+ +KTP QW A     ++PSP C GG  +
Sbjct:   55 GKPLIQRHRMVNAVLQQELDDGVHALSILSKTPKQWEANA--MVKPSPSCRGGMAA 108
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig78600.15534.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FU24_ECTSI4.560e-2885.96Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D8LTH4_ECTSI8.750e-1566.67BolA protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D... [more]
G4ZLH3_PHYSP7.990e-1457.14Uncharacterized protein n=3 Tax=Phytophthora TaxID... [more]
A0A1V9Z5Q5_9STRA1.560e-1360.38BolA-like protein n=1 Tax=Achlya hypogyna TaxID=12... [more]
A0A484DWY1_BRELC2.350e-1362.26Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
A0A6G0X0A1_9STRA2.850e-1358.18Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A8K1FC65_PYTOL3.950e-1360.38Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
UPI0014024C0E5.440e-1357.41bolA-like protein 1 n=1 Tax=Petromyzon marinus Tax... [more]
A0A662WN87_9STRA5.720e-1356.60Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
A0A3M6VVI5_9STRA5.860e-1353.57Uncharacterized protein n=1 Tax=Peronospora effusa... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig78600contigH-elongata_contig78600:2218..2391 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score85.9
Seed ortholog evalue5.8e-15
Seed eggNOG ortholog2880.D7FU24
Preferred namebola1
KEGG koko:K22066
EggNOG free text desc.protein maturation by iron-sulfur cluster transfer
EggNOG OGsCOG0271@1,KOG2313@2759
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03029
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size174
Cds size147
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931191.5126648-UTR-H-elongata_contig78600:2217..22441622931191.5126648-UTR-H-elongata_contig78600:2217..2244Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig78600 2218..2244 +
1691679735.384401-UTR-H-elongata_contig78600:2217..22441691679735.384401-UTR-H-elongata_contig78600:2217..2244Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig78600 2218..2244 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931191.525925-CDS-H-elongata_contig78600:2244..23911622931191.525925-CDS-H-elongata_contig78600:2244..2391Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78600 2245..2391 +
1691679735.394936-CDS-H-elongata_contig78600:2244..23911691679735.394936-CDS-H-elongata_contig78600:2244..2391Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78600 2245..2391 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig78600.15534.1prot_H-elongata_contig78600.15534.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig78600 2245..2391 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig78600.15534.1

>prot_H-elongata_contig78600.15534.1 ID=prot_H-elongata_contig78600.15534.1|Name=mRNA_H-elongata_contig78600.15534.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=49bp
MVNAALKEELVEDIHALSMATKTPAQWNAEGGKKIEPSPLCAGGSVSR*
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mRNA from alignment at H-elongata_contig78600:2218..2391+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig78600.15534.1 ID=mRNA_H-elongata_contig78600.15534.1|Name=mRNA_H-elongata_contig78600.15534.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=174bp|location=Sequence derived from alignment at H-elongata_contig78600:2218..2391+ (Himanthalia elongata Himel1 dioecious)
GGAAAGCCCCTCCTGGCAAGGCATCGAATGGTAAACGCGGCGCTCAAGGA
AGAACTCGTTGAGGACATACATGCTCTGTCAATGGCCACGAAGACGCCTG
CTCAGTGGAACGCCGAAGGCGGGAAGAAGATCGAACCTTCGCCGCTGTGC
GCGGGAGGCTCGGTCTCTAGGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig78600:2218..2391+

>mRNA_H-elongata_contig78600.15534.1 ID=mRNA_H-elongata_contig78600.15534.1|Name=mRNA_H-elongata_contig78600.15534.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=294bp|location=Sequence derived from alignment at H-elongata_contig78600:2218..2391+ (Himanthalia elongata Himel1 dioecious)
ATGGTAAACGCGGCGCTCAAGGAAGAACTCGTTGAGGACATACATGCTCT
GTCAATGGCCACGAAGACGCCTGCTCAGTGGAACGCCGAAGGCGGGAAGA
AGATCGAACCTTCGCCGCTGTGCGCGGGAGGCTCGGTCTCTAGGTAGATG
GTAAACGCGGCGCTCAAGGAAGAACTCGTTGAGGACATACATGCTCTGTC
AATGGCCACGAAGACGCCTGCTCAGTGGAACGCCGAAGGCGGGAAGAAGA
TCGAACCTTCGCCGCTGTGCGCGGGAGGCTCGGTCTCTAGGTAG
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