prot_H-elongata_contig78597.15531.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig78597.15531.1
Unique Nameprot_H-elongata_contig78597.15531.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length306
Homology
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BLAST of mRNA_H-elongata_contig78597.15531.1 vs. uniprot
Match: D7G7I0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7I0_ECTSI)

HSP 1 Score: 342 bits (877), Expect = 1.440e-103
Identity = 178/316 (56.33%), Postives = 223/316 (70.57%), Query Frame = 0 
Query:    1 RFRDYDIDNEGCLGRREFIKVLALSLTGEAWSVGQLSSGFPLGGLISDAEAEELMSRLDRRHDGRVFWEDFLEFFDDA-----DGRSSNGSTEPWFQLESKIAQKLVEYMKGQGGVAARRSWLNSLHRCFRDTDVNRTGVLDKEGFSRCFQAMRGGLSAKEVHRLFAALHDKT-----GVKYATLVEFLQSNNAKWYQTEKDIADKIIRAMGSDEPSRRAWLDRIRHRFMRLDAFRVGVMGASDFLQTLRENGCHLTFDDEARLLDALETEDSARYYSEGDVSYRELLLFCARRTGRWNETQPRLAQRLQEALRRQ 306
            RFRD+DID +GCLGRREF++ L L+L  E       S  F +GG++S+ EA ELM RLDR  DGRV WE F+++F DA      G    G  E WFQLE  IA+KL++ M+ QGG  ARR+W+NSL R F+  D++ TG L+++ F RC ++M   LSA+E  RLF +L   T     G +Y  LV FL+  NA WY  E DIADKI+ AMG D PSRRAWL+RIR RFM LDAFR GV+GASD LQ L++ GC+L  ++EARLLDALETE+SAR+ +EG VSYRELLLFCAR  G+W+E QP LA+RL+EALR Q
Sbjct: 1006 RFRDFDIDGDGCLGRREFMRALNLALACETGDDSDPSPYFTVGGVLSEQEAAELMDRLDRDRDGRVSWEGFVKYFADAVHGEEGGGRGGGHPESWFQLEVDIAEKLLQQMEAQGGSTARRAWVNSLRRRFQTADIHETGTLNRDEFFRCLRSMHVSLSAREGERLFLSLLPTTTDPMRGARYPELVNFLRGKNAMWYDVESDIADKILTAMGPDGPSRRAWLNRIRRRFMSLDAFRAGVLGASDLLQALKDGGCYLGLEEEARLLDALETEESARFDTEGGVSYRELLLFCARHAGKWSEGQPLLAERLREALRSQ 1321
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BLAST of mRNA_H-elongata_contig78597.15531.1 vs. uniprot
Match: A0A6H5JNM1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNM1_9PHAE)

HSP 1 Score: 199 bits (505), Expect = 8.760e-54
Identity = 101/207 (48.79%), Postives = 133/207 (64.25%), Query Frame = 0 
Query:    1 RFRDYDIDNEGCLGRREFIKVLALSLTGEAWSVGQLSSGFPLGGLISDAEAEELMSRLDRRHDGRVFWEDFLEFFDDA-----DGRSSNGSTEPWFQLESKIAQKLVEYMKGQGGVAARRSWLNSLHRCFRDTDVNRTGVLDKEGFSRCFQAMRGGLSAKEVHRLFAALHDKT-----GVKYATLVEFLQSNNAKWYQTEKDIADKI 197
            RF+D+DID +GCLGRREF++ L L+L  E       S  F +GG++S+ EA ELM RLDR  DGRV WE F+E+F DA      G    G  E WFQLE  IA+KL++ ++ QGG  ARR+W+NSL R F+  D++ TG L+++ F RC ++M   LSA+E  RLF +L   T     G +Y  LV FL+  NAKWY  E DIADK+
Sbjct:  995 RFQDFDIDGDGCLGRREFVRALNLALACETGDDSDPSPYFTVGGVLSEQEASELMGRLDRDRDGRVSWEGFVEYFADAVHGEEGGGRGGGHPESWFQLEVDIAEKLLQQLEAQGGCTARRAWVNSLRRRFQTADIHETGTLNRDAFFRCLRSMHVSLSAREGERLFLSLLPTTTDPTRGARYPELVNFLRGKNAKWYDVESDIADKV 1201
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig78597.15531.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G7I0_ECTSI1.440e-10356.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JNM1_9PHAE8.760e-5448.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002048EF-hand domainPFAMPF13833EF-hand_8coord: 46..76
e-value: 0.0013
score: 18.5
IPR002048EF-hand domainPROSITEPS50222EF_HAND_2coord: 1..28
score: 8.934
IPR002048EF-hand domainPROSITEPS50222EF_HAND_2coord: 46..81
score: 9.436
IPR002048EF-hand domainPROSITEPS50222EF_HAND_2coord: 210..245
score: 5.42
IPR002048EF-hand domainPROSITEPS50222EF_HAND_2coord: 116..151
score: 6.647
NoneNo IPR availableGENE3D1.10.238.10coord: 112..297
e-value: 2.0E-12
score: 48.9
NoneNo IPR availableGENE3D1.10.238.10coord: 1..104
e-value: 2.2E-9
score: 39.1
NoneNo IPR availablePANTHERPTHR20875FAMILY NOT NAMEDcoord: 115..282
IPR018247EF-Hand 1, calcium-binding sitePROSITEPS00018EF_HAND_1coord: 6..18
IPR011992EF-hand domain pairSUPERFAMILY47473EF-handcoord: 2..181

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig78597contigH-elongata_contig78597:208..2588 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig78597.15531.1mRNA_H-elongata_contig78597.15531.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig78597 208..2588 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig78597.15531.1 ID=prot_H-elongata_contig78597.15531.1|Name=mRNA_H-elongata_contig78597.15531.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=306bp
RFRDYDIDNEGCLGRREFIKVLALSLTGEAWSVGQLSSGFPLGGLISDAE
AEELMSRLDRRHDGRVFWEDFLEFFDDADGRSSNGSTEPWFQLESKIAQK
LVEYMKGQGGVAARRSWLNSLHRCFRDTDVNRTGVLDKEGFSRCFQAMRG
GLSAKEVHRLFAALHDKTGVKYATLVEFLQSNNAKWYQTEKDIADKIIRA
MGSDEPSRRAWLDRIRHRFMRLDAFRVGVMGASDFLQTLRENGCHLTFDD
EARLLDALETEDSARYYSEGDVSYRELLLFCARRTGRWNETQPRLAQRLQ
EALRRQ
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002048EF_hand_dom
IPR018247EF_Hand_1_Ca_BS
IPR011992EF-hand-dom_pair