mRNA_H-elongata_contig7858.15528.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig7858.15528.1
Unique NamemRNA_H-elongata_contig7858.15528.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig7858.15528.1 vs. uniprot
Match: D7FKL4_ECTSI (Ankyrin repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKL4_ECTSI)

HSP 1 Score: 127 bits (319), Expect = 1.290e-29
Identity = 159/386 (41.19%), Postives = 202/386 (52.33%), Query Frame = 1
Query:    1 RGLLRGVEQIIVDLVFERLSPKHLAAWLEVPLVQAAACGDRELVARLMAAGADTGCAMHVAIRGGYENLVSDMLTHEPLLSIKDKDGATPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSSFLCRYGPRELSPLDVAXXXXXXXXXRTMIVQGVDVQASDSIDSTALHEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAS---TGSPEA-VXXXXXXXXXXXXXXXXXXXXXXXXXSNAGKAGVVKIVDTLLRWGADEAAADVDGLIPKDVVGANCPH--RVERDVERVFKLLENAPADRAWRRRGFFVMCRSLLRTVHVENLSRGLEGNSGDSSSSVVAWTLGL-HEGVFRTVMLFL 1137
            RG LRG E+ I DL  E  +PK  A  ++  L  AA  G   L  +L+ AGA+ G A+H A+RGG+ ++   +L      S  D++G TP XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX +    RYG RE+S LD+          RT+I  G DV A++     ALH A                                A+   T +  A +                         + AGK G+V++VD LLRWGADE     +G+   D +G   P   R+  + E V KLL NAPADRAWRRR   V+CR+    + +          S D  + + A  LGL  EG+FRT++ F+
Sbjct:    7 RGALRGEEERIFDLAAETCTPKQWAGLMQPFLEHAAGRGHEHLTRKLVEAGAEIGTAVHAAVRGGHCDITEFLLESGASASASDEEGLTPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADINRRYGDREISALDIGAGEGHVDFIRTLIEHGADVDATNYGGVAALHHATANNKVEAMDVLLRAGANARSMSESGHTVLHMAAITRTRTEAATLAVLLKHGADVNAQTVGGTSVLEYVATRAGKQGIVEVVDLLLRWGADETHVAGNGMRAADAIGMKVPEEDRIPEEFEGVRKLLANAPADRAWRRRCSLVLCRARPDKMQL----------SSDRIARLEARVLGLVEEGIFRTIVRFI 382          
BLAST of mRNA_H-elongata_contig7858.15528.1 vs. uniprot
Match: A0A6H5KXK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXK5_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 2.220e-20
Identity = 197/400 (49.25%), Postives = 241/400 (60.25%), Query Frame = 1
Query:   31 IVDLVFERLSPKHLAAWLEVPLVQAAACGDRELVARLMAAGADTGCAMHVAIRGGYENLVSDMLTHEPLLSIKDKDGATPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSSFLCRYGPRELSPLDVAXXXXXXXXXRTMIVQGVDVQASDSIDSTALHEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRASTGSPEAVXXXXXXXXXXXXXXXXXXXXXXXXXSN-AGKAGVVKIVDTLLRWGADEAAADVDGLIPKDVVGANCPH--RVERDVERVFKLLENAPADRAWRRRGFFVMCRS---------LLRTVHVENLSR------------GLEGNS------GDSSSSVVAWTLGLHE-GVFRTVMLFL 1137
            +VD +FE L+ + LA  L   L  AAA G+++L  RL+ AGA+ G A+H A+ GG+  +VSD+L  E  L+  D DG TP XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX      R    +      A         R +I  G DV A D+   TA     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX          XXXXXXXXXXXXXX              AG+ G  ++V++LLR GADE  A+V G    D++G +     R+  DVERV +LL NAPADRAWRRRG+ +MCR+         +    H  N++R            G+ G S      G + + VV+  + L E G+FRT++ +L
Sbjct:    1 MVDFIFEILTSQQLAELLRALLEHAAAKGNKDLAQRLVRAGAEIGDALHRAVDGGHREIVSDLLESEASLAATDMDGRTPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTLRSTQFKCPATHAAALEGHVEILRAIIEHGADVDAVDAQQRTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSNSLLTPLMKAGRQAGRQGAAEVVNSLLRAGADETIANVQGNKAVDMIGEDVEEEDRLTEDVERVRELLANAPADRAWRRRGYLIMCRAQPDRVPERRMTSGTHYTNVARRTRSRAKMARARGIAGESTVDESTGGNWAVVVSKVISLQEEGIFRTIVEYL 400          
BLAST of mRNA_H-elongata_contig7858.15528.1 vs. uniprot
Match: D7G981_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G981_ECTSI)

HSP 1 Score: 82.8 bits (203), Expect = 9.000e-14
Identity = 54/151 (35.76%), Postives = 75/151 (49.67%), Query Frame = 1
Query:  784 NAGKAGVVKIVDTLLRWGADEAAADVDGLIPKDVVGANCPHRVER--DVERVFKLLENAPADRAWRRRGFFVMCR-------------------------SLLRTVHVENLSRG------LEGNSGDSSSSVVAWTLGLHEGVFRTVMLFL 1137
            +AG  G V++VD LLRW ADE   D  G  P ++VG   P       +V+RV+KLL+ AP DRAWRRRG  V+CR                         S  + V  E ++ G       +G +    S++V   LGL EG+FRT++ +L
Sbjct:  249 SAGDEGAVEVVDLLLRWNADETDDDAYGHTPGNIVGCMTPETDSMFVNVQRVWKLLQYAPQDRAWRRRGMLVLCRAHPERLGLRQNASHVQESTVLRVTRSRTKLVEREQVAGGSGEGAAADGRTAREWSNMVYRVLGLDEGIFRTIVGYL 399          
BLAST of mRNA_H-elongata_contig7858.15528.1 vs. uniprot
Match: D7G6X8_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6X8_ECTSI)

HSP 1 Score: 81.3 bits (199), Expect = 3.690e-13
Identity = 46/79 (58.23%), Postives = 53/79 (67.09%), Query Frame = 1
Query:  787 AGKAGVVKIVDTLLRWGADEAAADVDGLIPKDVVG-----ANCPHRVERDVERVFKLLENAPADRAWRRRGFFVMCRSL 1008
            AG+ GV  IVD LLR GADE A + DG    +VVG     A CP   ++DVERV  LLENAP DRAWRRRGF V+CR+ 
Sbjct:  216 AGRQGVTAIVDMLLRCGADETALNPDGRTAAEVVGHHIEYAACPLN-KQDVERVRDLLENAPVDRAWRRRGFLVLCRAF 293          
BLAST of mRNA_H-elongata_contig7858.15528.1 vs. uniprot
Match: A0A6H5KNU3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNU3_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 1.760e-12
Identity = 45/79 (56.96%), Postives = 53/79 (67.09%), Query Frame = 1
Query:  787 AGKAGVVKIVDTLLRWGADEAAADVDGLIPKDVVG-----ANCPHRVERDVERVFKLLENAPADRAWRRRGFFVMCRSL 1008
            AG+ GV  IVD LLR GADE A + DG    +VVG     A CP   ++D+ERV  LLENAPADRAWRRRG  V+CR+ 
Sbjct:  265 AGRQGVTAIVDMLLRCGADETALNPDGRTAAEVVGHHIEYAACPLN-KQDLERVRDLLENAPADRAWRRRGLLVLCRAF 342          
BLAST of mRNA_H-elongata_contig7858.15528.1 vs. uniprot
Match: D7FYD0_ECTSI (Ankyrin repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYD0_ECTSI)

HSP 1 Score: 78.6 bits (192), Expect = 2.630e-12
Identity = 187/418 (44.74%), Postives = 223/418 (53.35%), Query Frame = 1
Query:    1 RGLLRGVEQIIVDLVFERLSPKHLAAWLEVPLVQAAACGDRELVARLMAAGADTGCAMHVAIRGGYENLVSDMLTHEPLLSIKDKDGATPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSSFLCR--YGPRELSPLDVAXXXXXXXXXRTMIVQGVDVQASDSIDSTALHEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRASTGSP--EAVXXXXXXXXXXXXXXXXXXXXXXXXXSNAGKAGVVKIVDTLLRWGADEAAADVDGLIPKDVVGANCPHRVE----RDVERVFKLLENAPADRAWRRRGFFVMCRSLLRTVHVEN---------LSRGL---------------------EGNSGDSSSSVVAWTLGLHE-GVFRTVMLFL 1137
            R  LRG    ++DLV    +P+  AAWL+VPL  A   GDR+L + L+  GA+ G A++ AI  G   ++S +L +   +S  D +G   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX      R  Y     S     XXXXXXXXX         V A D++   ALH A                                AS   P  E+  XXXXXXXXXXXXXXXXXXXXXX  S AG+ G  ++VD LLR GADE   D +G  P D VG +C    +     +V  V +LL NAPADRAWRRRG  V+CR+ LR   +           LSR                       EG +GD   S     + L E G+FR+V+ FL
Sbjct:    6 RKPLRGAALRVLDLVSAASTPEEWAAWLKVPLEIAVRTGDRDLASMLVRGGAEAGTAVNEAIACGDTEVMSLLLDNGASVSATDAEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLREWYDGAHRSXXXXXXXXXXXXXXXXXXXXXXXVNAGDNLFVPALHLAVAFNKVKAVKVLLEAGADIQGHSFSRSTPLHLASFKQPSVESAVXXXXXXXXXXXXXXXXXXXXXXAASYAGRQGSAELVDLLLRRGADETTPDRNGQQPADRVG-HCMELGDVLLGHEVVLVHELLANAPADRAWRRRGLLVLCRAWLRRSRLRQEDGGDTRGGLSRRTRSRAKLARSDAVGAGCRRGTPEGGTGDEWRSASKRVVELEEEGIFRSVVGFL 422          
BLAST of mRNA_H-elongata_contig7858.15528.1 vs. uniprot
Match: A0A6H5JBC2_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBC2_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 3.770e-10
Identity = 42/89 (47.19%), Postives = 54/89 (60.67%), Query Frame = 1
Query:  784 NAGKAGVVKIVDTLLRWGADEAAADVDGLIPKDVVGANCPH--RVERDVERVFKLLENAPADRAWRRRGFFVMCRSLLRTVHVENLSRG 1044
            +AG  G V++VD LLRW ADEA  D  G  P+++V    P   R+  +V+RV+K L+ AP DRAWR RG  V+CR     VH E L  G
Sbjct:  461 SAGDEGAVEVVDLLLRWNADEADDDTYGRTPRNLVVRMAPETDRMFVNVQRVWKPLQYAPQDRAWRHRGMLVLCR-----VHPERLVYG 544          
BLAST of mRNA_H-elongata_contig7858.15528.1 vs. uniprot
Match: D7FSI6_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSI6_ECTSI)

HSP 1 Score: 68.6 bits (166), Expect = 4.560e-9
Identity = 39/85 (45.88%), Postives = 48/85 (56.47%), Query Frame = 1
Query:  799 GVVKIVDTLLRWGADEAAADVDGLIPKDVVGANCPHRVERDVERV--FKLLENAPADRAWRRRGFFVMCRSLLRTVHVENLSRGL 1047
            GV+++VD LLRWGA E A +  G  P +V      HR +   ER     LL  APADRAWRRRG+ VM R+   T  +    RGL
Sbjct:  286 GVMEVVDLLLRWGASETAVNKHGNTPAEVFQRLAIHRPDATEERAGALVLLARAPADRAWRRRGWVVMLRARSETERIAAQRRGL 370          
BLAST of mRNA_H-elongata_contig7858.15528.1 vs. uniprot
Match: D8LKW6_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKW6_ECTSI)

HSP 1 Score: 64.7 bits (156), Expect = 1.070e-7
Identity = 48/125 (38.40%), Postives = 63/125 (50.40%), Query Frame = 1
Query:  817 DTLLRWGADEAAADVDGLIPKD-VVGANCPHRVERDVERVFKLLENAPADRAWRRRGFFVMCRSLLRTVHVENLSRGLEG-----------NSGDSSS------SVVAWTLGLHEGVFRTVMLFL 1137
            D LLRWGADE A D +G  PK  +VG++   +  R       +L+ AP DRAWRRRG  +MCR+L   V   +  RG                GDS S       ++A  + L + VFRTV+ FL
Sbjct:  378 DLLLRWGADETAIDNEGYTPKARIVGSSNGSQALRH------MLDKAPVDRAWRRRGTLIMCRALPGIVSTTS-RRGXXXXXXXXXXXXXXRGGDSVSRRRGLGGLLARVVELDDAVFRTVVGFL 495          
BLAST of mRNA_H-elongata_contig7858.15528.1 vs. uniprot
Match: D7G316_ECTSI (Inversin protein alternative isoform n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G316_ECTSI)

HSP 1 Score: 64.7 bits (156), Expect = 1.320e-7
Identity = 49/129 (37.98%), Postives = 61/129 (47.29%), Query Frame = 1
Query:  805 VKIVDTLLRWGADEAAADVDGLIPKDVVGANCPHRVERDVERVFKLLENAPADRAWRRRGFFVMCRS------------------LLRTVHVENLSRGLEGNSGDSSSSVVAWTLGLHEGVFRTVMLFL 1137
            V+ V  LL+WGADE A D DG  P D++  + P       E V  LL  APADRAWRRRG+ VM  S                    R+V  +  +RG  G       + VA    + EGVFR V+ FL
Sbjct:  585 VEHVSLLLQWGADETALDRDGKTPADLIDESRPQH-----EAVRLLLARAPADRAWRRRGWLVMVFSRTPKAGGSXXXXXXXXXXXARSVKQQCGARG--GKESFDLFAAVAQLRVVEEGVFRNVVGFL 706          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7858.15528.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FKL4_ECTSI1.290e-2941.19Ankyrin repeat protein n=2 Tax=Ectocarpus TaxID=28... [more]
A0A6H5KXK5_9PHAE2.220e-2049.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G981_ECTSI9.000e-1435.76Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus si... [more]
D7G6X8_ECTSI3.690e-1358.23Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
A0A6H5KNU3_9PHAE1.760e-1256.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FYD0_ECTSI2.630e-1244.74Ankyrin repeat protein n=2 Tax=Ectocarpus TaxID=28... [more]
A0A6H5JBC2_9PHAE3.770e-1047.19Reverse transcriptase domain-containing protein n=... [more]
D7FSI6_ECTSI4.560e-945.88Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus si... [more]
D8LKW6_ECTSI1.070e-738.40Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
D7G316_ECTSI1.320e-737.98Inversin protein alternative isoform n=1 Tax=Ectoc... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig7858contigH-elongata_contig7858:8335..9474 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score127.9
Seed ortholog evalue1e-26
Seed eggNOG ortholog2880.D7FKL4
KEGG koko:K21440
GOsGO:0001508,GO:0002027,GO:0002262,GO:0002376,GO:0002520,GO:0003008,GO:0003012,GO:0003013,GO:0003015,GO:0003205,GO:0003230,GO:0003279,GO:0003283,GO:0003674,GO:0005198,GO:0005200,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005783,GO:0005829,GO:0005856,GO:0005886,GO:0005911,GO:0005938,GO:0006725,GO:0006778,GO:0006779,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006816,GO:0006873,GO:0006874,GO:0006875,GO:0006887,GO:0006888,GO:0006928,GO:0006936,GO:0006937,GO:0006941,GO:0006942,GO:0006996,GO:0007009,GO:0007010,GO:0007154,GO:0007163,GO:0007165,GO:0007267,GO:0007275,GO:0007507,GO:0008015,GO:0008016,GO:0008092,GO:0008093,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009893,GO:0009987,GO:0010256,GO:0010468,GO:0010522,GO:0010604,GO:0010628,GO:0010638,GO:0010646,GO:0010880,GO:0010881,GO:0010882,GO:0010959,GO:0012505,GO:0014704,GO:0014731,GO:0015672,GO:0016020,GO:0016043,GO:0016192,GO:0016323,GO:0016528,GO:0016529,GO:0018130,GO:0019222,GO:0019438,GO:0019722,GO:0019725,GO:0019899,GO:0019900,GO:0019901,GO:0019932,GO:0022898,GO:0023051,GO:0023052,GO:0030001,GO:0030003,GO:0030011,GO:0030016,GO:0030017,GO:0030018,GO:0030029,GO:0030048,GO:0030054,GO:0030097,GO:0030099,GO:0030154,GO:0030218,GO:0030315,GO:0030424,GO:0030507,GO:0030673,GO:0030674,GO:0030863,GO:0031252,GO:0031253,GO:0031256,GO:0031430,GO:0031647,GO:0031672,GO:0031674,GO:0032409,GO:0032411,GO:0032412,GO:0032414,GO:0032501,GO:0032502,GO:0032589,GO:0032879,GO:0032940,GO:0032970,GO:0033013,GO:0033014,GO:0033036,GO:0033043,GO:0033267,GO:0033292,GO:0033365,GO:0034101,GO:0034394,GO:0034613,GO:0034641,GO:0034762,GO:0034764,GO:0034765,GO:0034767,GO:0035088,GO:0035090,GO:0035556,GO:0035637,GO:0036309,GO:0036371,GO:0042383,GO:0042391,GO:0042592,GO:0042692,GO:0042995,GO:0043005,GO:0043034,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043266,GO:0043268,GO:0043269,GO:0043270,GO:0043292,GO:0044057,GO:0044093,GO:0044237,GO:0044249,GO:0044271,GO:0044291,GO:0044304,GO:0044325,GO:0044422,GO:0044424,GO:0044425,GO:0044444,GO:0044448,GO:0044449,GO:0044456,GO:0044459,GO:0044463,GO:0044464,GO:0045197,GO:0045199,GO:0045202,GO:0045211,GO:0046483,GO:0046903,GO:0046907,GO:0048193,GO:0048468,GO:0048513,GO:0048518,GO:0048522,GO:0048534,GO:0048731,GO:0048821,GO:0048856,GO:0048869,GO:0048872,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050821,GO:0050896,GO:0051049,GO:0051050,GO:0051117,GO:0051128,GO:0051130,GO:0051179,GO:0051186,GO:0051188,GO:0051234,GO:0051239,GO:0051270,GO:0051279,GO:0051282,GO:0051641,GO:0051649,GO:0051716,GO:0051899,GO:0051924,GO:0051928,GO:0055001,GO:0055065,GO:0055072,GO:0055074,GO:0055076,GO:0055080,GO:0055082,GO:0055117,GO:0060047,GO:0060048,GO:0060090,GO:0060255,GO:0060306,GO:0060307,GO:0060341,GO:0061024,GO:0061061,GO:0061245,GO:0061337,GO:0061515,GO:0065007,GO:0065008,GO:0065009,GO:0070252,GO:0070296,GO:0070727,GO:0070838,GO:0070972,GO:0071704,GO:0071840,GO:0071944,GO:0072359,GO:0072503,GO:0072507,GO:0072511,GO:0072657,GO:0072659,GO:0086001,GO:0086002,GO:0086003,GO:0086004,GO:0086005,GO:0086010,GO:0086012,GO:0086014,GO:0086015,GO:0086018,GO:0086019,GO:0086026,GO:0086046,GO:0086065,GO:0086066,GO:0086070,GO:0086091,GO:0090257,GO:0097060,GO:0097458,GO:0098590,GO:0098771,GO:0098794,GO:0098900,GO:0098901,GO:0098907,GO:0098910,GO:0099080,GO:0099081,GO:0099512,GO:0099568,GO:0099623,GO:0120025,GO:0120038,GO:1901016,GO:1901018,GO:1901019,GO:1901021,GO:1901360,GO:1901362,GO:1901379,GO:1901381,GO:1901564,GO:1901566,GO:1901576,GO:1903115,GO:1903169,GO:1903522,GO:1903779,GO:1904062,GO:1904064,GO:1904427,GO:1990778,GO:2001257,GO:2001259
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
Ec32 ortholog descriptionAnkyrin-repeat protein
Ec32 orthologEc-09_001280.1
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-09_000650.1
Exons1
Model size1140
Cds size1140
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931190.9320824-CDS-H-elongata_contig7858:8334..94741622931190.9320824-CDS-H-elongata_contig7858:8334..9474Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7858 8335..9474 -
1691679735.1180575-CDS-H-elongata_contig7858:8334..94741691679735.1180575-CDS-H-elongata_contig7858:8334..9474Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7858 8335..9474 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig7858.15528.1prot_H-elongata_contig7858.15528.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig7858 8335..9474 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig7858.15528.1

>prot_H-elongata_contig7858.15528.1 ID=prot_H-elongata_contig7858.15528.1|Name=mRNA_H-elongata_contig7858.15528.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=380bp
RGLLRGVEQIIVDLVFERLSPKHLAAWLEVPLVQAAACGDRELVARLMAA
GADTGCAMHVAIRGGYENLVSDMLTHEPLLSIKDKDGATPIHIAAAFGHR
SMIRSLLGKGSHKNALDRWGRTPLHRAAENGHSDAVRDLLEAGSSFLCRY
GPRELSPLDVAARRGHVEALRTMIVQGVDVQASDSIDSTALHEAAAENMV
ESINILLEAGADLSAQDSFEWTPLHRASTGSPEAVTALLEHGADVNLPGA
FAQTPLYLAASNAGKAGVVKIVDTLLRWGADEAAADVDGLIPKDVVGANC
PHRVERDVERVFKLLENAPADRAWRRRGFFVMCRSLLRTVHVENLSRGLE
GNSGDSSSSVVAWTLGLHEGVFRTVMLFL*
back to top

mRNA from alignment at H-elongata_contig7858:8335..9474-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig7858.15528.1 ID=mRNA_H-elongata_contig7858.15528.1|Name=mRNA_H-elongata_contig7858.15528.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1140bp|location=Sequence derived from alignment at H-elongata_contig7858:8335..9474- (Himanthalia elongata Himel1 dioecious)
CGAGGACTGCTGCGGGGAGTAGAGCAGATAATCGTTGATCTCGTCTTCGA ACGGTTATCCCCCAAGCACCTGGCGGCGTGGCTCGAGGTACCTCTCGTTC AAGCCGCTGCATGTGGTGATCGTGAACTCGTAGCCAGGCTCATGGCTGCC GGGGCAGATACCGGGTGTGCAATGCATGTGGCAATTCGGGGAGGTTATGA AAATCTTGTGAGCGATATGTTGACCCATGAACCTCTCCTCAGCATCAAGG ACAAAGACGGGGCCACCCCAATCCATATAGCCGCGGCATTCGGCCACCGC AGTATGATTCGATCCTTGTTGGGGAAAGGCTCGCATAAAAATGCTCTCGA TAGATGGGGGCGTACGCCCCTTCATCGTGCAGCGGAGAACGGCCACTCCG ACGCGGTGCGCGATCTCTTGGAAGCCGGGTCAAGCTTCCTGTGTCGATAC GGCCCCCGCGAACTCTCTCCCTTGGACGTGGCGGCTCGGCGAGGACACGT GGAGGCGTTGAGAACGATGATTGTACAGGGGGTAGACGTCCAAGCCTCTG ACTCCATCGACTCGACAGCCCTGCACGAGGCAGCTGCCGAAAACATGGTG GAATCGATCAATATACTTCTTGAGGCAGGCGCCGATCTTTCCGCTCAAGA CTCGTTCGAGTGGACACCTTTGCATCGCGCCAGCACGGGCAGCCCCGAGG CCGTGACCGCTCTCCTGGAGCACGGCGCCGACGTTAACCTTCCGGGTGCG TTTGCGCAAACGCCACTGTACCTCGCCGCGTCGAATGCTGGAAAAGCAGG CGTCGTGAAGATCGTGGACACTCTTCTGAGGTGGGGAGCGGATGAAGCCG CGGCAGACGTGGATGGCTTGATCCCGAAAGACGTCGTGGGAGCCAACTGT CCCCACCGCGTCGAGCGAGATGTCGAACGCGTATTCAAGCTTCTTGAGAA CGCTCCCGCGGACAGGGCTTGGCGGCGCCGTGGGTTTTTCGTTATGTGCC GGTCTCTCCTGCGTACGGTGCATGTAGAAAATCTGTCACGTGGCCTTGAA GGTAACTCGGGGGACTCGTCTTCGTCTGTAGTGGCTTGGACATTGGGATT GCACGAGGGCGTCTTCAGAACGGTCATGCTTTTCCTGTGA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig7858:8335..9474-

>mRNA_H-elongata_contig7858.15528.1 ID=mRNA_H-elongata_contig7858.15528.1|Name=mRNA_H-elongata_contig7858.15528.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2280bp|location=Sequence derived from alignment at H-elongata_contig7858:8335..9474- (Himanthalia elongata Himel1 dioecious)
CGAGGACTGCTGCGGGGAGTAGAGCAGATAATCGTTGATCTCGTCTTCGA
ACGGTTATCCCCCAAGCACCTGGCGGCGTGGCTCGAGGTACCTCTCGTTC
AAGCCGCTGCATGTGGTGATCGTGAACTCGTAGCCAGGCTCATGGCTGCC
GGGGCAGATACCGGGTGTGCAATGCATGTGGCAATTCGGGGAGGTTATGA
AAATCTTGTGAGCGATATGTTGACCCATGAACCTCTCCTCAGCATCAAGG
ACAAAGACGGGGCCACCCCAATCCATATAGCCGCGGCATTCGGCCACCGC
AGTATGATTCGATCCTTGTTGGGGAAAGGCTCGCATAAAAATGCTCTCGA
TAGATGGGGGCGTACGCCCCTTCATCGTGCAGCGGAGAACGGCCACTCCG
ACGCGGTGCGCGATCTCTTGGAAGCCGGGTCAAGCTTCCTGTGTCGATAC
GGCCCCCGCGAACTCTCTCCCTTGGACGTGGCGGCTCGGCGAGGACACGT
GGAGGCGTTGAGAACGATGATTGTACAGGGGGTAGACGTCCAAGCCTCTG
ACTCCATCGACTCGACAGCCCTGCACGAGGCAGCTGCCGAAAACATGGTG
GAATCGATCAATATACTTCTTGAGGCAGGCGCCGATCTTTCCGCTCAAGA
CTCGTTCGAGTGGACACCTTTGCATCGCGCCAGCACGGGCAGCCCCGAGG
CCGTGACCGCTCTCCTGGAGCACGGCGCCGACGTTAACCTTCCGGGTGCG
TTTGCGCAAACGCCACTGTACCTCGCCGCGTCGAATGCTGGAAAAGCAGG
CGTCGTGAAGATCGTGGACACTCTTCTGAGGTGGGGAGCGGATGAAGCCG
CGGCAGACGTGGATGGCTTGATCCCGAAAGACGTCGTGGGAGCCAACTGT
CCCCACCGCGTCGAGCGAGATGTCGAACGCGTATTCAAGCTTCTTGAGAA
CGCTCCCGCGGACAGGGCTTGGCGGCGCCGTGGGTTTTTCGTTATGTGCC
GGTCTCTCCTGCGTACGGTGCATGTAGAAAATCTGTCACGTGGCCTTGAA
GGTAACTCGGGGGACTCGTCTTCGTCTGTAGTGGCTTGGACATTGGGATT
GCACGAGGGCGTCTTCAGAACGGTCATGCTTTTCCTGTGACGAGGACTGC
TGCGGGGAGTAGAGCAGATAATCGTTGATCTCGTCTTCGAACGGTTATCC
CCCAAGCACCTGGCGGCGTGGCTCGAGGTACCTCTCGTTCAAGCCGCTGC
ATGTGGTGATCGTGAACTCGTAGCCAGGCTCATGGCTGCCGGGGCAGATA
CCGGGTGTGCAATGCATGTGGCAATTCGGGGAGGTTATGAAAATCTTGTG
AGCGATATGTTGACCCATGAACCTCTCCTCAGCATCAAGGACAAAGACGG
GGCCACCCCAATCCATATAGCCGCGGCATTCGGCCACCGCAGTATGATTC
GATCCTTGTTGGGGAAAGGCTCGCATAAAAATGCTCTCGATAGATGGGGG
CGTACGCCCCTTCATCGTGCAGCGGAGAACGGCCACTCCGACGCGGTGCG
CGATCTCTTGGAAGCCGGGTCAAGCTTCCTGTGTCGATACGGCCCCCGCG
AACTCTCTCCCTTGGACGTGGCGGCTCGGCGAGGACACGTGGAGGCGTTG
AGAACGATGATTGTACAGGGGGTAGACGTCCAAGCCTCTGACTCCATCGA
CTCGACAGCCCTGCACGAGGCAGCTGCCGAAAACATGGTGGAATCGATCA
ATATACTTCTTGAGGCAGGCGCCGATCTTTCCGCTCAAGACTCGTTCGAG
TGGACACCTTTGCATCGCGCCAGCACGGGCAGCCCCGAGGCCGTGACCGC
TCTCCTGGAGCACGGCGCCGACGTTAACCTTCCGGGTGCGTTTGCGCAAA
CGCCACTGTACCTCGCCGCGTCGAATGCTGGAAAAGCAGGCGTCGTGAAG
ATCGTGGACACTCTTCTGAGGTGGGGAGCGGATGAAGCCGCGGCAGACGT
GGATGGCTTGATCCCGAAAGACGTCGTGGGAGCCAACTGTCCCCACCGCG
TCGAGCGAGATGTCGAACGCGTATTCAAGCTTCTTGAGAACGCTCCCGCG
GACAGGGCTTGGCGGCGCCGTGGGTTTTTCGTTATGTGCCGGTCTCTCCT
GCGTACGGTGCATGTAGAAAATCTGTCACGTGGCCTTGAAGGTAACTCGG
GGGACTCGTCTTCGTCTGTAGTGGCTTGGACATTGGGATTGCACGAGGGC
GTCTTCAGAACGGTCATGCTTTTCCTGTGA
back to top