mRNA_H-elongata_contig7852.15523.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig7852.15523.1
Unique NamemRNA_H-elongata_contig7852.15523.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig7852.15523.1 vs. uniprot
Match: D8LRL6_ECTSI (Putative NIN-like transcription factor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRL6_ECTSI)

HSP 1 Score: 137 bits (345), Expect = 2.230e-36
Identity = 79/126 (62.70%), Postives = 88/126 (69.84%), Query Frame = 1 
Query:    7 ALEKCDSEIETASLRERLASLGKKESLVCKFASCGLTGPLRNMLFSSKPESICDVLVKDIVEQSGRGLISEVMKGGQGSQQNQTTGAKRSR-------------GEVDGIGPASSMPPGFVADKQH 345
            ALEKCDS+IE ASL++RL SL KKESLVCKFASCGLTGPLRNMLFSSKPESICDVL+KDIVEQSGR + +    GG G  Q    G KR R             G  DG+    SMPPG+ +DKQH
Sbjct:  101 ALEKCDSDIERASLKDRLESLIKKESLVCKFASCGLTGPLRNMLFSSKPESICDVLIKDIVEQSGRPIGA----GGAGQDQANVAGLKRRRXXXXXXXXXXXMVGHADGM----SMPPGYGSDKQH 218
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BLAST of mRNA_H-elongata_contig7852.15523.1 vs. uniprot
Match: A0A6H5J9E8_9PHAE (RWP-RK domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9E8_9PHAE)

HSP 1 Score: 139 bits (351), Expect = 4.860e-36
Identity = 81/122 (66.39%), Postives = 88/122 (72.13%), Query Frame = 1 
Query:    7 ALEKCDSEIETASLRERLASLGKKESLVCKFASCGLTGPLRNMLFSSKPESICDVLVKDIVEQSGRGLISEVMKGGQGSQQNQTTGAKRSR--GEVDGIG-------PASSMPPGFVADKQH 345
            ALEKCDSEIE ASL++RL SL KKESLVCKFASCGLTGPLRNMLFSSKPESICDVLVKDIVEQSGR + +    GG G  Q    G KR R  GE  G+G          SMPPG+ +DK H
Sbjct:   68 ALEKCDSEIERASLKDRLESLIKKESLVCKFASCGLTGPLRNMLFSSKPESICDVLVKDIVEQSGRPIGA----GGAGQDQANVAGLKRRREQGEEVGVGMGMVGHADGMSMPPGYGSDKHH 185
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7852.15523.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LRL6_ECTSI2.230e-3662.70Putative NIN-like transcription factor n=1 Tax=Ect... [more]
A0A6H5J9E8_9PHAE4.860e-3666.39RWP-RK domain-containing protein n=1 Tax=Ectocarpu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig7852contigH-elongata_contig7852:2001..2826 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size352
Cds size351
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig7852.15523.1prot_H-elongata_contig7852.15523.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig7852 2001..2826 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931190.5770483-CDS-H-elongata_contig7852:2000..21091622931190.5770483-CDS-H-elongata_contig7852:2000..2109Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7852 2001..2109 +
1691679734.9758797-CDS-H-elongata_contig7852:2000..21091691679734.9758797-CDS-H-elongata_contig7852:2000..2109Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7852 2001..2109 +
1622931190.5936377-CDS-H-elongata_contig7852:2413..24841622931190.5936377-CDS-H-elongata_contig7852:2413..2484Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7852 2414..2484 +
1691679734.9839063-CDS-H-elongata_contig7852:2413..24841691679734.9839063-CDS-H-elongata_contig7852:2413..2484Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7852 2414..2484 +
1622931190.612172-CDS-H-elongata_contig7852:2655..28261622931190.612172-CDS-H-elongata_contig7852:2655..2826Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7852 2656..2826 +
1691679734.9918866-CDS-H-elongata_contig7852:2655..28261691679734.9918866-CDS-H-elongata_contig7852:2655..2826Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7852 2656..2826 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig7852.15523.1

>prot_H-elongata_contig7852.15523.1 ID=prot_H-elongata_contig7852.15523.1|Name=mRNA_H-elongata_contig7852.15523.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=117bp
EKALEKCDSEIETASLRERLASLGKKESLVCKFASCGLTGPLRNMLFSSK
PESICDVLVKDIVEQSGRGLISEVMKGGQGSQQNQTTGAKRSRGEVDGIG
PASSMPPGFVADKQHW*
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mRNA from alignment at H-elongata_contig7852:2001..2826+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig7852.15523.1 ID=mRNA_H-elongata_contig7852.15523.1|Name=mRNA_H-elongata_contig7852.15523.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=826bp|location=Sequence derived from alignment at H-elongata_contig7852:2001..2826+ (Himanthalia elongata Himel1 dioecious)
GAGAAGGCGTTGGAGAAGTGCGATAGCGAGATCGAGACAGCGAGCCTCAG
GGAACGGCTGGCTTCGTTGGGGAAAAAGGAGAGCCTCGTGTGCAAGTTCG
CAAGCTGCGGTGAGCGAAATTTCTTTATTATCATATGCTTGAATTTATTT
TCCTCCCCTGCCGTGATAGCTCCAAAGGATAGTGCGCGAAGCCTGTGGTA
TGGTGCTTGTTCAGCATGCACGCGGTAGTAAGCACCCATTAGATAATTGA
AGTTTCGTCCGTTACTGCACATGAATAAACAGGCGAACGCGCTGCTACTA
GGCTGCGATTATGTGGCTACTGCTGCCTTGAATGTTATTTTCTCAACTAC
ACGCAACATCTACGTGGATCCTCTTAGTGGCTTTCTGTCGCCTGTGTATG
CCTGTTCTTACAGGGCTGACGGGGCCCCTTCGAAATATGCTTTTCAGCTC
CAAGCCGGAGAGTATCTGTGACGTCCTTGTCAAGGTGGGACCGGGCTCGA
TCTTGTATCTTGCGTCTCGTATCACGAGGGGAAGTTTGTGGGAAGTGGTC
AAACTATGAGGTACAGCACGGCGTGAACCAAACCAACGGTTTCTTCTACG
CTTGTCGGAATCTGCCCGCCTCCCACCCCTGTCTGAATGTTTCATTTTTT
TGTAGGACATAGTCGAGCAATCGGGCCGTGGGCTGATTTCGGAGGTCATG
AAGGGCGGGCAAGGTTCCCAGCAAAATCAGACTACGGGGGCGAAGCGGAG
CAGAGGAGAAGTCGATGGGATAGGTCCTGCGTCTTCCATGCCCCCTGGAT
TCGTCGCGGACAAGCAGCACTGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig7852:2001..2826+

>mRNA_H-elongata_contig7852.15523.1 ID=mRNA_H-elongata_contig7852.15523.1|Name=mRNA_H-elongata_contig7852.15523.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=702bp|location=Sequence derived from alignment at H-elongata_contig7852:2001..2826+ (Himanthalia elongata Himel1 dioecious)
GAGAAGGCGTTGGAGAAGTGCGATAGCGAGATCGAGACAGCGAGCCTCAG
GGAACGGCTGGCTTCGTTGGGGAAAAAGGAGAGCCTCGTGTGCAAGTTCG
CAAGCTGCGGAGAAGGCGTTGGAGAAGTGCGATAGCGAGATCGAGACAGC
GAGCCTCAGGGAACGGCTGGCTTCGTTGGGGAAAAAGGAGAGCCTCGTGT
GCAAGTTCGCAAGCTGCGGGCTGACGGGGCCCCTTCGAAATATGCTTTTC
AGCTCCAAGCCGGAGAGTATCTGTGACGTCCTTGTCAAGGGCTGACGGGG
CCCCTTCGAAATATGCTTTTCAGCTCCAAGCCGGAGAGTATCTGTGACGT
CCTTGTCAAGGACATAGTCGAGCAATCGGGCCGTGGGCTGATTTCGGAGG
TCATGAAGGGCGGGCAAGGTTCCCAGCAAAATCAGACTACGGGGGCGAAG
CGGAGCAGAGGAGAAGTCGATGGGATAGGTCCTGCGTCTTCCATGCCCCC
TGGATTCGTCGCGGACAAGCAGCACTGGTGAGACATAGTCGAGCAATCGG
GCCGTGGGCTGATTTCGGAGGTCATGAAGGGCGGGCAAGGTTCCCAGCAA
AATCAGACTACGGGGGCGAAGCGGAGCAGAGGAGAAGTCGATGGGATAGG
TCCTGCGTCTTCCATGCCCCCTGGATTCGTCGCGGACAAGCAGCACTGGT
GA
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