mRNA_H-elongata_contig7852.15525.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig7852.15525.1
Unique NamemRNA_H-elongata_contig7852.15525.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7852.15525.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig7852contigH-elongata_contig7852:4446..5155 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size711
Cds size681
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931190.5077925-UTR-H-elongata_contig7852:4445..44741622931190.5077925-UTR-H-elongata_contig7852:4445..4474Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7852 4446..4474 +
1691679734.9553244-UTR-H-elongata_contig7852:4445..44741691679734.9553244-UTR-H-elongata_contig7852:4445..4474Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7852 4446..4474 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931190.5252745-CDS-H-elongata_contig7852:4474..51551622931190.5252745-CDS-H-elongata_contig7852:4474..5155Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7852 4475..5155 +
1691679734.967398-CDS-H-elongata_contig7852:4474..51551691679734.967398-CDS-H-elongata_contig7852:4474..5155Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7852 4475..5155 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig7852.15525.1prot_H-elongata_contig7852.15525.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig7852 4475..5155 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig7852.15525.1

>prot_H-elongata_contig7852.15525.1 ID=prot_H-elongata_contig7852.15525.1|Name=mRNA_H-elongata_contig7852.15525.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=227bp
MGVYGQDQRGLQGESAQQQPQMSQISQHWPLTHAKPQEWTGGTQGYSPHT
AQLPQVKMGQPPKSQLSSLPVVGGSSVGVPTGSMLPIAQNSLADGVCVSG
GGAPAEGMHLTQKYQAGTARQGWGGYDPSLTMPTQQQQQKSQQRVIDTSM
TDASMRMVASGDRDGGGSGGEGPATKVSAGVASSPGAPNRENVESVQQPQ
GQSQAVAARDQHNQQQQVVWGSHNASS
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mRNA from alignment at H-elongata_contig7852:4446..5155+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig7852.15525.1 ID=mRNA_H-elongata_contig7852.15525.1|Name=mRNA_H-elongata_contig7852.15525.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=710bp|location=Sequence derived from alignment at H-elongata_contig7852:4446..5155+ (Himanthalia elongata Himel1 dioecious)
AGTCTTTTATTTACGCCACCCCGCCATCCATGGGGGTCTACGGCCAGGAT
CAGCGGGGTTTGCAAGGCGAATCCGCGCAGCAGCAGCCGCAAATGTCGCA
AATTTCCCAGCACTGGCCACTGACCCACGCGAAGCCTCAAGAATGGACAG
GGGGGACTCAGGGATACTCACCGCACACGGCCCAGCTTCCGCAGGTGAAA
ATGGGTCAGCCGCCGAAAAGCCAACTCTCTTCCCTCCCCGTCGTCGGCGG
CTCCAGCGTTGGTGTTCCTACCGGGAGTATGCTGCCCATCGCTCAGAATA
GCCTTGCCGATGGGGTATGCGTTAGCGGCGGTGGCGCCCCTGCCGAAGGC
ATGCATTTGACGCAGAAGTACCAGGCAGGGACCGCTCGGCAGGGGTGGGG
AGGATACGATCCGTCGCTGACGATGCCTACTCAGCAACAGCAGCAAAAAT
CTCAGCAGCGGGTGATTGATACCAGCATGACTGATGCCAGCATGCGCATG
GTTGCATCGGGTGATCGTGATGGCGGAGGTAGCGGCGGCGAGGGACCGGC
AACAAAAGTGAGTGCTGGCGTCGCGTCTTCTCCCGGCGCTCCCAATCGCG
AGAATGTGGAGAGTGTGCAGCAGCCCCAGGGGCAGTCGCAAGCGGTTGCG
GCCCGTGATCAACATAATCAGCAGCAGCAGGTGGTGTGGGGATCGCACAA
CGCTTCCAGT
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Coding sequence (CDS) from alignment at H-elongata_contig7852:4446..5155+

>mRNA_H-elongata_contig7852.15525.1 ID=mRNA_H-elongata_contig7852.15525.1|Name=mRNA_H-elongata_contig7852.15525.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1362bp|location=Sequence derived from alignment at H-elongata_contig7852:4446..5155+ (Himanthalia elongata Himel1 dioecious)
ATGGGGGTCTACGGCCAGGATCAGCGGGGTTTGCAAGGCGAATCCGCGCA
GCAGCAGCCGCAAATGTCGCAAATTTCCCAGCACTGGCCACTGACCCACG
CGAAGCCTCAAGAATGGACAGGGGGGACTCAGGGATACTCACCGCACACG
GCCCAGCTTCCGCAGGTGAAAATGGGTCAGCCGCCGAAAAGCCAACTCTC
TTCCCTCCCCGTCGTCGGCGGCTCCAGCGTTGGTGTTCCTACCGGGAGTA
TGCTGCCCATCGCTCAGAATAGCCTTGCCGATGGGGTATGCGTTAGCGGC
GGTGGCGCCCCTGCCGAAGGCATGCATTTGACGCAGAAGTACCAGGCAGG
GACCGCTCGGCAGGGGTGGGGAGGATACGATCCGTCGCTGACGATGCCTA
CTCAGCAACAGCAGCAAAAATCTCAGCAGCGGGTGATTGATACCAGCATG
ACTGATGCCAGCATGCGCATGGTTGCATCGGGTGATCGTGATGGCGGAGG
TAGCGGCGGCGAGGGACCGGCAACAAAAGTGAGTGCTGGCGTCGCGTCTT
CTCCCGGCGCTCCCAATCGCGAGAATGTGGAGAGTGTGCAGCAGCCCCAG
GGGCAGTCGCAAGCGGTTGCGGCCCGTGATCAACATAATCAGCAGCAGCA
GGTGGTGTGGGGATCGCACAACGCTTCCAGTATGGGGGTCTACGGCCAGG
ATCAGCGGGGTTTGCAAGGCGAATCCGCGCAGCAGCAGCCGCAAATGTCG
CAAATTTCCCAGCACTGGCCACTGACCCACGCGAAGCCTCAAGAATGGAC
AGGGGGGACTCAGGGATACTCACCGCACACGGCCCAGCTTCCGCAGGTGA
AAATGGGTCAGCCGCCGAAAAGCCAACTCTCTTCCCTCCCCGTCGTCGGC
GGCTCCAGCGTTGGTGTTCCTACCGGGAGTATGCTGCCCATCGCTCAGAA
TAGCCTTGCCGATGGGGTATGCGTTAGCGGCGGTGGCGCCCCTGCCGAAG
GCATGCATTTGACGCAGAAGTACCAGGCAGGGACCGCTCGGCAGGGGTGG
GGAGGATACGATCCGTCGCTGACGATGCCTACTCAGCAACAGCAGCAAAA
ATCTCAGCAGCGGGTGATTGATACCAGCATGACTGATGCCAGCATGCGCA
TGGTTGCATCGGGTGATCGTGATGGCGGAGGTAGCGGCGGCGAGGGACCG
GCAACAAAAGTGAGTGCTGGCGTCGCGTCTTCTCCCGGCGCTCCCAATCG
CGAGAATGTGGAGAGTGTGCAGCAGCCCCAGGGGCAGTCGCAAGCGGTTG
CGGCCCGTGATCAACATAATCAGCAGCAGCAGGTGGTGTGGGGATCGCAC
AACGCTTCCAGT
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