mRNA_H-elongata_contig7852.15524.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig7852.15524.1
Unique NamemRNA_H-elongata_contig7852.15524.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7852.15524.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig7852contigH-elongata_contig7852:3685..4477 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size258
Cds size258
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig7852.15524.1prot_H-elongata_contig7852.15524.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig7852 3685..4477 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931190.4146354-CDS-H-elongata_contig7852:3684..37541622931190.4146354-CDS-H-elongata_contig7852:3684..3754Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7852 3685..3754 +
1691679734.9199111-CDS-H-elongata_contig7852:3684..37541691679734.9199111-CDS-H-elongata_contig7852:3684..3754Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7852 3685..3754 +
1622931190.4309757-CDS-H-elongata_contig7852:3936..40941622931190.4309757-CDS-H-elongata_contig7852:3936..4094Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7852 3937..4094 +
1691679734.9301019-CDS-H-elongata_contig7852:3936..40941691679734.9301019-CDS-H-elongata_contig7852:3936..4094Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7852 3937..4094 +
1622931190.4509585-CDS-H-elongata_contig7852:4447..44771622931190.4509585-CDS-H-elongata_contig7852:4447..4477Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7852 4448..4477 +
1691679734.9415646-CDS-H-elongata_contig7852:4447..44771691679734.9415646-CDS-H-elongata_contig7852:4447..4477Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7852 4448..4477 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig7852.15524.1

>prot_H-elongata_contig7852.15524.1 ID=prot_H-elongata_contig7852.15524.1|Name=mRNA_H-elongata_contig7852.15524.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=86bp
MSPHAPHQLIPYMSTAHLAAGGSADAMRIPHYPQWHGSMLTGMGPEAGGM
SGMAAMLQQQKQQQHHFIQRRVPPQQSFIYATPPSM
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mRNA from alignment at H-elongata_contig7852:3685..4477+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig7852.15524.1 ID=mRNA_H-elongata_contig7852.15524.1|Name=mRNA_H-elongata_contig7852.15524.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=793bp|location=Sequence derived from alignment at H-elongata_contig7852:3685..4477+ (Himanthalia elongata Himel1 dioecious)
ATGTCCCCTCACGCTCCACACCAGCTCATCCCGTACATGTCAACAGCTCA
CCTGGCCGCGGGGGGATCAGGTGGGCAGAGAGAGAGAGAGAGAGAACACT
AATGCGAAGCCGCTGCGAAATGTCAAGACTGGTGTTTTTTCTTCTTTCTT
TATCCGACGTAGTTTTGCGTGTTGGGGACCGTGGCTTCAACGACATCAGT
TCCTCACCTCATCGCTCCTGTTTTTGCCGCCTCGCCGTCGAAATATCTGC
AGCCGACGCAATGCGGATACCGCACTATCCCCAATGGCACGGCAGTATGC
TGACGGGCATGGGACCCGAGGCAGGGGGCATGAGTGGAATGGCGGCCATG
CTTCAGCAGCAAAAACAGCAGCAACATCACTTCATACAGCGGCGCGTCCC
TCCTCAACAGGTGCGTTTGGCGGGATGTCGTCGATCATATTTTCGGAACC
ACGTTATTGCGCTTGCGCTAGCTGGGCTGGTGTACACCCGTCATTTCGCT
TTAATCTTGCGAGGCTGTGAAGGTGTTTCGCCCGCGCGCATGATAGATGT
TGTGATGCGCGCGATGGGTAGATTGATTTATGCGTGAGCGACCGCCCCAA
CGTTCCCCGCCCCCTCCCTACTATTCATACTAATAATACTGTTTTATCGT
CCCCTATCATGCTTTCTGTTGTGATTCACGTGGGAAGTTTCCGTGCCTTA
CACCAGTCATATAATGCATTCCTACCTTCCATTGCCCCCACCCTTTGCAC
GTTGTCATAAAAGTCTTTTATTTACGCCACCCCGCCATCCATG
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Coding sequence (CDS) from alignment at H-elongata_contig7852:3685..4477+

>mRNA_H-elongata_contig7852.15524.1 ID=mRNA_H-elongata_contig7852.15524.1|Name=mRNA_H-elongata_contig7852.15524.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=516bp|location=Sequence derived from alignment at H-elongata_contig7852:3685..4477+ (Himanthalia elongata Himel1 dioecious)
ATGTCCCCTCACGCTCCACACCAGCTCATCCCGTACATGTCAACAGCTCA
CCTGGCCGCGGGGGGATCAGATGTCCCCTCACGCTCCACACCAGCTCATC
CCGTACATGTCAACAGCTCACCTGGCCGCGGGGGGATCAGCCGACGCAAT
GCGGATACCGCACTATCCCCAATGGCACGGCAGTATGCTGACGGGCATGG
GACCCGAGGCAGGGGGCATGAGTGGAATGGCGGCCATGCTTCAGCAGCAA
AAACAGCAGCAACATCACTTCATACAGCGGCGCGTCCCTCCTCAACAGCC
GACGCAATGCGGATACCGCACTATCCCCAATGGCACGGCAGTATGCTGAC
GGGCATGGGACCCGAGGCAGGGGGCATGAGTGGAATGGCGGCCATGCTTC
AGCAGCAAAAACAGCAGCAACATCACTTCATACAGCGGCGCGTCCCTCCT
CAACAGTCTTTTATTTACGCCACCCCGCCATCCATGTCTTTTATTTACGC
CACCCCGCCATCCATG
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