mRNA_H-elongata_contig7851.15522.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig7851.15522.1
Unique NamemRNA_H-elongata_contig7851.15522.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig7851.15522.1 vs. uniprot
Match: D7FIA3_ECTSI (Ankyrin repeat domain-containing protein 39 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIA3_ECTSI)

HSP 1 Score: 101 bits (251), Expect = 7.040e-24
Identity = 49/82 (59.76%), Postives = 62/82 (75.61%), Query Frame = 1 
Query:  328 GPIDAAESINGWTPLHLAAIGGHLDVVYLLMEAGCDVNVKDRVGDRPINCVKRVFNNKAGRGRRATRLRNALLDLSDHDDES 573
            G +D  E++ GWT LHLAAIGGHLDVVY+LME GCD  VKD+VGD+PI+C++R   ++       TRLRNALLDLSD ++ S
Sbjct:   56 GFLDLRENLGGWTALHLAAIGGHLDVVYMLMEVGCDPRVKDKVGDQPIHCIRRKRTSEG----LVTRLRNALLDLSDSEESS 133
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BLAST of mRNA_H-elongata_contig7851.15522.1 vs. uniprot
Match: A0A835YNS5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNS5_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 1.310e-15
Identity = 46/112 (41.07%), Postives = 61/112 (54.46%), Query Frame = 1 
Query:  148 GLLSLAQDGLR--ILEADVHGWTALHWACSRGSAVLTHVVLQEIKRLEREISEVFEGTVQCVGP---IDAAESINGWTPLHLAAIGGHLDVVYLLMEAGCDVNVKDRVGDRP 468
            G +  A  G R  +  AD HGW  LHWA S G   +  ++L+ ++    + S+  E      GP   + A E I+GW PLH+AAIGGHL+  YLL+ AG  V V D  GD P
Sbjct:  189 GSVPCADGGARSVVAAADEHGWNGLHWAASAGDVDVMALMLRALE----QSSDAREADETAAGPDPVVLAVEKISGWAPLHVAAIGGHLECAYLLLAAGARVRVADAQGDTP 296
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BLAST of mRNA_H-elongata_contig7851.15522.1 vs. uniprot
Match: F0YRH9_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YRH9_AURAN)

HSP 1 Score: 81.6 bits (200), Expect = 2.230e-15
Identity = 49/130 (37.69%), Postives = 74/130 (56.92%), Query Frame = 1 
Query:  157 SLAQDGLRILEADVHGWTALHWACSRGSAVLTHVVLQEIKRLEREISEVFEGTVQCVGPIDAAESINGWTPLHLAAIGGHLDVVYLLMEAGCDVNVKDRVGDRPINCVKRVFNNKAGRGRRATRLRNALL 546
            ++A  G+  +E  +H W  LH+A + G      ++L  ++R  R+  +      +  GP+DA ES++GWTPLHLA +G H+ VV LL++AG   + KD+ GD P+ C        A  G RA R+R ALL
Sbjct:  142 AIADRGVDDVEG-LHDWGWLHYAAAAGKDEHVRIILDAVRRATRD-DDGGGDDERPAGPLDAKESLDGWTPLHLAVVGRHVAVVRLLLKAGARADAKDKHGDAPLACC-------AAAGVRAKRVR-ALL 261
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BLAST of mRNA_H-elongata_contig7851.15522.1 vs. uniprot
Match: A0A7S2BI40_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BI40_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 5.350e-12
Identity = 46/131 (35.11%), Postives = 68/131 (51.91%), Query Frame = 1 
Query:  106 SRSVGRMVMEEDVAGLLS--LAQDGLRILEADVHGWTALHWACSRGSAVLTHVVLQEIKRLEREISEVFEGTVQCV-GPIDAAESINGWTPLHLAAIGG---HLDVVYLLMEAGCDVNVKDRVGDRPINCV 480
            +RSV +M   +  A  L   + ++G  + E D H WTAL WA S  +  +   +L     L R+  E  +   +   G +D+ + INGWT LHLAAIGG   H     LL+ A   ++VKD   D P++C+
Sbjct:  163 NRSVVKMAQRDTPARELRRLVKEEGGDLFETDAHEWTALMWAVSEANVDMVETLLS----LLRDAGEASDDEAESAKGWLDSKDRINGWTALHLAAIGGTRNHFSCARLLVRARAKLDVKDACLDEPLDCI 289
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BLAST of mRNA_H-elongata_contig7851.15522.1 vs. uniprot
Match: A0A3N2Q9Q2_9PEZI (Glycerophosphocholine phosphodiesterase n=1 Tax=Sodiomyces alkalinus F11 TaxID=1314773 RepID=A0A3N2Q9Q2_9PEZI)

HSP 1 Score: 63.5 bits (153), Expect = 2.240e-8
Identity = 39/100 (39.00%), Postives = 50/100 (50.00%), Query Frame = 1 
Query:  160 LAQDGLRILEADVHGWTALHWACSRGSAVLTHVVLQEIKRLEREISEVFEGTVQCVGPIDAAESINGWTPLHLAAIGGHLDVVYLLMEAGCDVNVKDRVG 459
            L   G+ +   D  G TALH A   G A    V+L+              GT +    +D AES+  WTPLH+AA+ GHL VV LL+ AG DV+  D  G
Sbjct:  473 LVDAGVDVNWRDTAGETALHVAARYGHAGCAEVLLR--------------GTDEMKADVDIAESVYSWTPLHVAAVDGHLPVVQLLVNAGADVSRPDSSG 558
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BLAST of mRNA_H-elongata_contig7851.15522.1 vs. uniprot
Match: A0A8K0WZG8_9PEZI (Glycerophosphodiester phosphodiesterase GDE1 n=1 Tax=Plectosphaerella cucumerina TaxID=40658 RepID=A0A8K0WZG8_9PEZI)

HSP 1 Score: 60.5 bits (145), Expect = 2.550e-7
Identity = 40/100 (40.00%), Postives = 49/100 (49.00%), Query Frame = 1 
Query:  160 LAQDGLRILEADVHGWTALHWACSRGSAVLTHVVLQEIKRLEREISEVFEGTVQCVGPIDAAESINGWTPLHLAAIGGHLDVVYLLMEAGCDVNVKDRVG 459
            L   G+ I   D  G TALH A   G    T V+LQ              GT +    I+ AE+   WTPLH+AA+ GHL VV LL++AG DV   D  G
Sbjct:  475 LVDAGVDINWRDNVGETALHVAARFGHDECTRVLLQ--------------GTAEQKADIEIAENSYAWTPLHVAAVDGHLSVVELLIDAGADVGKADSSG 560
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BLAST of mRNA_H-elongata_contig7851.15522.1 vs. uniprot
Match: A0A6I8PR32_ORNAN (Fibronectin type-III domain-containing protein n=1 Tax=Ornithorhynchus anatinus TaxID=9258 RepID=A0A6I8PR32_ORNAN)

HSP 1 Score: 59.3 bits (142), Expect = 4.630e-7
Identity = 34/94 (36.17%), Postives = 51/94 (54.26%), Query Frame = 1 
Query:  193 DVHGWTALHWACSRGSAVLTHVVLQEIKRLEREISEVFEGTVQCVGPIDAAESINGWTPL-HLAAIGGHLDVVYLLMEAGCDVNVKDRVGDRPI 471
            D+ G TALHWA   G     HV+               E  +Q    ++  ++++GW+PL  ++A+ GH DV  LL+EAG DVNV+D+ G  P+
Sbjct:  182 DLGGCTALHWAADGGHC---HVI---------------EWMLQDGCKVNVLDAVSGWSPLMRVSAVSGHRDVASLLIEAGADVNVRDKDGKTPL 257
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BLAST of mRNA_H-elongata_contig7851.15522.1 vs. uniprot
Match: A0A3Q1ERZ9_9TELE (Ankyrin repeat domain-containing protein SOWAHA-like n=2 Tax=Pomacentridae TaxID=30863 RepID=A0A3Q1ERZ9_9TELE)

HSP 1 Score: 58.5 bits (140), Expect = 9.550e-7
Identity = 36/89 (40.45%), Postives = 51/89 (57.30%), Query Frame = 1 
Query:  202 GWTALHWACSRGSAVLTHVVLQEIKRLEREISEVFEGTVQCVGPIDAAESINGWTPLHLAAIGGHLDVVYLLMEA-GCDVNVKDRVGDR 465
            G+TALHWA   G++ +TH +L+  K+          GT  CV     A    G+TPLH+AAI GH DV+ LL+++ G  VN +D  G +
Sbjct:  314 GFTALHWAAKDGNSQMTHEILKVCKK---------RGT--CVDINSKAH--GGYTPLHIAAIHGHTDVMLLLVQSYGASVNERDNDGKK 389
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BLAST of mRNA_H-elongata_contig7851.15522.1 vs. uniprot
Match: A0A667YKB8_9TELE (Sosondowah ankyrin repeat domain family member Ab n=2 Tax=Myripristis murdjan TaxID=586833 RepID=A0A667YKB8_9TELE)

HSP 1 Score: 58.5 bits (140), Expect = 9.810e-7
Identity = 33/96 (34.38%), Postives = 54/96 (56.25%), Query Frame = 1 
Query:  202 GWTALHWACSRGSAVLTHVVLQEIKRLEREISEVFEGTVQCVGPIDAAESINGWTPLHLAAIGGHLDVVYLLMEA-GCDVNVKDRVGDRPINCVKR 486
            G+TALHWA   G+  + H ++   K+          GT   V     +++  G+TPLH+AAI GH +V+ LL++  G +VN++D  G +P + + R
Sbjct:  324 GFTALHWAAKDGNGEMVHKIMDISKK---------RGTYVNVN----SKTHGGYTPLHIAAIHGHSEVIVLLVQGYGANVNIRDNDGKKPCHYLGR 406
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BLAST of mRNA_H-elongata_contig7851.15522.1 vs. uniprot
Match: A0A8C0HDP0_CHEAB (Fibronectin type III and ankyrin repeat domains 1 n=1 Tax=Chelonoidis abingdonii TaxID=106734 RepID=A0A8C0HDP0_CHEAB)

HSP 1 Score: 57.0 bits (136), Expect = 2.250e-6
Identity = 36/97 (37.11%), Postives = 48/97 (49.48%), Query Frame = 1 
Query:  193 DVHGWTALHWACSRGSAVLTHVVLQEIKRLEREISEVFEGTVQCVGPIDAAESINGWTPL-HLAAIGGHLDVVYLLMEAGCDVNVKDRVGDRPINCV 480
            D+ G TALHWA   G                    EV E  +     +DA ++   WTPL  ++A+ G+ DV  LL+EAG DVNVKD+ G  P+  V
Sbjct:  171 DLGGCTALHWAVDGGHC------------------EVIEWMINDGCQVDAKDTCLEWTPLMRVSAVTGNKDVASLLIEAGADVNVKDKDGKTPLMSV 249
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7851.15522.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FIA3_ECTSI7.040e-2459.76Ankyrin repeat domain-containing protein 39 n=1 Ta... [more]
A0A835YNS5_9STRA1.310e-1541.07Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
F0YRH9_AURAN2.230e-1537.69Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
A0A7S2BI40_9STRA5.350e-1235.11Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A3N2Q9Q2_9PEZI2.240e-839.00Glycerophosphocholine phosphodiesterase n=1 Tax=So... [more]
A0A8K0WZG8_9PEZI2.550e-740.00Glycerophosphodiester phosphodiesterase GDE1 n=1 T... [more]
A0A6I8PR32_ORNAN4.630e-736.17Fibronectin type-III domain-containing protein n=1... [more]
A0A3Q1ERZ9_9TELE9.550e-740.45Ankyrin repeat domain-containing protein SOWAHA-li... [more]
A0A667YKB8_9TELE9.810e-734.38Sosondowah ankyrin repeat domain family member Ab ... [more]
A0A8C0HDP0_CHEAB2.250e-637.11Fibronectin type III and ankyrin repeat domains 1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig7851contigH-elongata_contig7851:7917..9360 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score62.4
Seed ortholog evalue2.7e-07
Seed eggNOG ortholog4792.ETI34834
Preferred nameankrd53
KEGG koko:K10297,ko:K20032,ko:K21441
KEGG TC9.B.37.1,9.B.37.3
EggNOG free text desc.proteasome regulatory particle assembly
EggNOG OGsCOG0666@1,KOG4412@2759
EC2.3.1.225
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036,ko04121,ko04131
Hectar predicted targeting categoryother localisation
Exons4
Model size573
Cds size573
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig7851.15522.1prot_H-elongata_contig7851.15522.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig7851 7917..9360 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931190.306608-CDS-H-elongata_contig7851:7916..80361622931190.306608-CDS-H-elongata_contig7851:7916..8036Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7851 7917..8036 -
1691679734.8832033-CDS-H-elongata_contig7851:7916..80361691679734.8832033-CDS-H-elongata_contig7851:7916..8036Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7851 7917..8036 -
1622931190.3197405-CDS-H-elongata_contig7851:8387..85351622931190.3197405-CDS-H-elongata_contig7851:8387..8535Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7851 8388..8535 -
1691679734.892878-CDS-H-elongata_contig7851:8387..85351691679734.892878-CDS-H-elongata_contig7851:8387..8535Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7851 8388..8535 -
1622931190.3384874-CDS-H-elongata_contig7851:8775..89761622931190.3384874-CDS-H-elongata_contig7851:8775..8976Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7851 8776..8976 -
1691679734.9009883-CDS-H-elongata_contig7851:8775..89761691679734.9009883-CDS-H-elongata_contig7851:8775..8976Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7851 8776..8976 -
1622931190.356979-CDS-H-elongata_contig7851:9256..93601622931190.356979-CDS-H-elongata_contig7851:9256..9360Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7851 9257..9360 -
1691679734.90944-CDS-H-elongata_contig7851:9256..93601691679734.90944-CDS-H-elongata_contig7851:9256..9360Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7851 9257..9360 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig7851.15522.1

>prot_H-elongata_contig7851.15522.1 ID=prot_H-elongata_contig7851.15522.1|Name=mRNA_H-elongata_contig7851.15522.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=191bp
ENAELDRRRRRCPVVVVDKYANGAEAKEGEDTNQRSRSVGRMVMEEDVAG
LLSLAQDGLRILEADVHGWTALHWACSRGSAVLTHVVLQEIKRLEREISE
VFEGTVQCVGPIDAAESINGWTPLHLAAIGGHLDVVYLLMEAGCDVNVKD
RVGDRPINCVKRVFNNKAGRGRRATRLRNALLDLSDHDDES
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mRNA from alignment at H-elongata_contig7851:7917..9360-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig7851.15522.1 ID=mRNA_H-elongata_contig7851.15522.1|Name=mRNA_H-elongata_contig7851.15522.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1444bp|location=Sequence derived from alignment at H-elongata_contig7851:7917..9360- (Himanthalia elongata Himel1 dioecious)
GAAAATGCCGAGCTCGATCGTCGACGCCGCCGTTGCCCAGTGGTGGTTGT
CGACAAATACGCCAATGGCGCAGAGGCGAAAGAAGGAGAAGACACCAATC
AGAGGTAACAAGAATACTAAAAGTTAAAGTACGAAAGTGGTACATCTACA
GCTATACAAATCCTCGCCAGCTCTACTGGTAGTAATGACATTTTTATCTT
GGGGATAACCAGTACATCTCGGATTAGGCTAGGTCTTCAAATATCAATTG
CCCCCCTTGCCCACCCCACTGCGGAAATGTTTGTTTCCTTGATGATGGCT
TGCGCATCGCACGCTGGTGGTATTTCCGTCGAACGGGAAATCTCATGTCA
CACAATACCTCCCCTATCGTGAAAACTGAGGCAGGTCACGGTCAGTTGGA
AGGATGGTCATGGAGGAAGACGTCGCCGGGTTGTTGAGTCTCGCGCAAGA
CGGCTTGAGAATCTTGGAGGCAGATGTACACGGGTGGACTGCTCTGCATT
GGGCTTGCTCGCGCGGCAGCGCCGTTCTGACGCACGTCGTCCTACAAGAG
ATAAAGAGGCTAGAGAGAGAAATCAGTGAGGTTTTGTTATTATAGTGTAG
CGGAACCTTCTACTGTAGTTCTGACATAACTCATGCTACAATTCGATACT
GTACCGCAAAGTACTACAAAACCGTTTAAGATAATCGTGCGCAGAACTGT
TAACGGGATATGAGCTTGACATATGGAGACACAGTGAAATTAAATCTTGG
AGCCCAATATCGCCGCAAGTGGCTCTTGGGATTGGTGCGGCCGCGCCGCT
TGGGAACAGGCATCGATTACGCCAGCGAAGGTACCGTACAGTGCGTCGGT
CCTATTGATGCGGCTGAGAGTATCAACGGGTGGACACCATTGCACCTGGC
CGCGATCGGCGGACACCTCGACGTGGTATATCTGCTCATGGAAGCTGGAT
GTGATGTCAACGTCAAGGATAGGGTGAGTAAGCAACGGTCGTAAGTACGC
ATAATACATTACATGCCGCAACGACGGGGCTTGACACGGAAGTGCTGTAT
GCATCTCTAACCTTGTCTTTGGTCGTGTGTGTAGTCAGAAACACAACCTG
ATCGACTACTGTGGCGAGGGGAGCGTCTGAAATCTTTAGACCCTATGATA
TTTATTTTGTTACGGAGCGAAACAATTTTAGCAAAGCACTACACTGCACT
GTACTGGAGGAATAGCCTACTATTTCGTAAAATTGAGGCTCTCGACGCTT
CTTTTATACTGGACTGTACACACGTTATGTCATGCACAAAACTTGTCCCC
GCCAATTATCCGGACTCGCGACAGGTTGGGGATCGGCCCATCAACTGCGT
GAAGCGCGTGTTCAATAATAAAGCCGGAAGAGGGCGGCGGGCAACGCGAC
TGCGCAACGCGTTGCTTGATCTGTCGGACCACGACGACGAGAGC
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Coding sequence (CDS) from alignment at H-elongata_contig7851:7917..9360-

>mRNA_H-elongata_contig7851.15522.1 ID=mRNA_H-elongata_contig7851.15522.1|Name=mRNA_H-elongata_contig7851.15522.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1146bp|location=Sequence derived from alignment at H-elongata_contig7851:7917..9360- (Himanthalia elongata Himel1 dioecious)
GAAAATGCCGAGCTCGATCGTCGACGCCGCCGTTGCCCAGTGGTGGTTGT
CGACAAATACGCCAATGGCGCAGAGGCGAAAGAAGGAGAAGACACCAATC
AGAGGAAAATGCCGAGCTCGATCGTCGACGCCGCCGTTGCCCAGTGGTGG
TTGTCGACAAATACGCCAATGGCGCAGAGGCGAAAGAAGGAGAAGACACC
AATCAGAGGTCACGGTCAGTTGGAAGGATGGTCATGGAGGAAGACGTCGC
CGGGTTGTTGAGTCTCGCGCAAGACGGCTTGAGAATCTTGGAGGCAGATG
TACACGGGTGGACTGCTCTGCATTGGGCTTGCTCGCGCGGCAGCGCCGTT
CTGACGCACGTCGTCCTACAAGAGATAAAGAGGCTAGAGAGAGAAATCAG
TGAGGTTTTGTCACGGTCAGTTGGAAGGATGGTCATGGAGGAAGACGTCG
CCGGGTTGTTGAGTCTCGCGCAAGACGGCTTGAGAATCTTGGAGGCAGAT
GTACACGGGTGGACTGCTCTGCATTGGGCTTGCTCGCGCGGCAGCGCCGT
TCTGACGCACGTCGTCCTACAAGAGATAAAGAGGCTAGAGAGAGAAATCA
GTGAGGTTTTCGAAGGTACCGTACAGTGCGTCGGTCCTATTGATGCGGCT
GAGAGTATCAACGGGTGGACACCATTGCACCTGGCCGCGATCGGCGGACA
CCTCGACGTGGTATATCTGCTCATGGAAGCTGGATGTGATGTCAACGTCA
AGGATAGGCGAAGGTACCGTACAGTGCGTCGGTCCTATTGATGCGGCTGA
GAGTATCAACGGGTGGACACCATTGCACCTGGCCGCGATCGGCGGACACC
TCGACGTGGTATATCTGCTCATGGAAGCTGGATGTGATGTCAACGTCAAG
GATAGGGTTGGGGATCGGCCCATCAACTGCGTGAAGCGCGTGTTCAATAA
TAAAGCCGGAAGAGGGCGGCGGGCAACGCGACTGCGCAACGCGTTGCTTG
ATCTGTCGGACCACGACGACGAGAGCGTTGGGGATCGGCCCATCAACTGC
GTGAAGCGCGTGTTCAATAATAAAGCCGGAAGAGGGCGGCGGGCAACGCG
ACTGCGCAACGCGTTGCTTGATCTGTCGGACCACGACGACGAGAGC
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