mRNA_H-elongata_contig78482.15518.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig78482.15518.1
Unique NamemRNA_H-elongata_contig78482.15518.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig78482.15518.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig78482contigH-elongata_contig78482:2..2863 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-08_003480.1
Exons3
Model size2073
Cds size1119
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig78482.15518.1prot_H-elongata_contig78482.15518.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig78482 230..2137 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931189.612669-UTR-H-elongata_contig78482:1..2291622931189.612669-UTR-H-elongata_contig78482:1..229Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig78482 2..229 +
1691679734.5889337-UTR-H-elongata_contig78482:1..2291691679734.5889337-UTR-H-elongata_contig78482:1..229Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig78482 2..229 +
1622931189.6671062-UTR-H-elongata_contig78482:2137..28631622931189.6671062-UTR-H-elongata_contig78482:2137..2863Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig78482 2138..2863 +
1691679734.6247349-UTR-H-elongata_contig78482:2137..28631691679734.6247349-UTR-H-elongata_contig78482:2137..2863Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig78482 2138..2863 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931189.6250172-CDS-H-elongata_contig78482:229..2771622931189.6250172-CDS-H-elongata_contig78482:229..277Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78482 230..277 +
1691679734.5993059-CDS-H-elongata_contig78482:229..2771691679734.5993059-CDS-H-elongata_contig78482:229..277Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78482 230..277 +
1622931189.6380599-CDS-H-elongata_contig78482:491..10701622931189.6380599-CDS-H-elongata_contig78482:491..1070Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78482 492..1070 +
1691679734.6081107-CDS-H-elongata_contig78482:491..10701691679734.6081107-CDS-H-elongata_contig78482:491..1070Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78482 492..1070 +
1622931189.6514215-CDS-H-elongata_contig78482:1645..21371622931189.6514215-CDS-H-elongata_contig78482:1645..2137Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78482 1646..2137 +
1691679734.6165655-CDS-H-elongata_contig78482:1645..21371691679734.6165655-CDS-H-elongata_contig78482:1645..2137Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78482 1646..2137 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig78482.15518.1

>prot_H-elongata_contig78482.15518.1 ID=prot_H-elongata_contig78482.15518.1|Name=mRNA_H-elongata_contig78482.15518.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=373bp
MLELLDVPRDDALLLQSLQTLRNLLLAVPLWALDRVEGGAHPEDDGAGPT
ADVGEGSGDVPPTVEESVERAEQERTVAVTGVAEQTAPRNVLPSAGDGGH
VDWRGWRDRIPGQGGRNAVDRQFWGELETSPPRDTLNGSTLIGRSESMGD
DFQPGQRFHRGVMERGRGSWTVRGRDEEADWGLAKLVEAVLCTLEGSPTG
EDCDETSCAALRLLYTLAAADDCQRAALRTPRVLQVIIPHLLPDDAHERR
SRPNPTFSEDWRIHPGIRGSRWRGNFEVSDPVTLPPPPSLDPPPVVADNA
ARRVLAQLLPERASSNMATVFAAFAAANLFPSSSEEPPRGGRDGTRAAVD
AAAALCGGTEFDQSGRGRPGRE*
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mRNA from alignment at H-elongata_contig78482:2..2863+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig78482.15518.1 ID=mRNA_H-elongata_contig78482.15518.1|Name=mRNA_H-elongata_contig78482.15518.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2862bp|location=Sequence derived from alignment at H-elongata_contig78482:2..2863+ (Himanthalia elongata Himel1 dioecious)
TGATGAGCCTCTGGCACTCATGAGCCAACCAATCCACAAGCGCCAAATAT
ATCCCGCGTCAACCAATTGACGAACGCTGGTACTCCTGCGCCGACCAAAT
AACCATCCCTTCCCTATTGTGTATGTCAGGTTCGAACATCGTGTGTGGCG
CTGCTCAGCAGCACGTGCTTCTTCGCCCCGTTGCACGTGCGAGTGGGGGT
TTCCTTTTCCCTGGGAGGCGTTGAGGGGATGCTCGAGCTGCTGGACGTTC
CCCGCGACGATGCCCTCCTCCTGCAGGTATTTAATCGATTCCTTGGGTTA
AATTTCAGTCTTCTGGTGTTCTGTTCCAACAAATTCCTTGTGTTGATGTA
CCTTAAGGCATACCTGATGTAGTATTAAACATGGCGATAATTGGTGCTGG
TTTAAGCGGGCCTAATTTTGGCGTGTCCCGGTTGACCGTTCATGTCCTTC
CCCTTCCTCTCCCTCCTTTCGCCTTCTCGATGAAAACTAGAGTCTCCAGA
CCCTGCGAAACCTTTTGCTCGCGGTTCCTCTGTGGGCGCTCGATCGTGTC
GAGGGAGGAGCCCATCCAGAGGATGATGGAGCAGGACCCACGGCAGACGT
AGGCGAAGGGTCAGGAGACGTTCCTCCCACCGTCGAAGAAAGCGTAGAGC
GTGCCGAGCAAGAACGAACCGTCGCCGTGACGGGCGTTGCGGAGCAGACG
GCTCCGAGGAACGTTCTGCCTTCCGCAGGGGATGGAGGGCATGTAGACTG
GAGGGGGTGGAGGGATCGGATTCCCGGGCAAGGAGGAAGAAACGCTGTCG
ACCGGCAATTCTGGGGTGAGCTGGAAACGTCCCCCCCAAGAGATACCCTT
AACGGGAGTACATTAATCGGTCGGTCAGAATCAATGGGAGATGATTTTCA
ACCTGGGCAGCGTTTCCACCGAGGCGTGATGGAACGGGGGAGGGGGTCAT
GGACGGTAAGGGGGAGGGACGAAGAGGCGGACTGGGGTTTGGCGAAGCTG
GTGGAAGCGGTGCTGTGCACGCTAGAAGGGTCTCCGACGGGAGAGGATTG
CGACGAAACGAGCTGTGCGGTGAGTTGGTCAGCTCTGCTTTGCTGCTCCG
TACCTCCATATATATGTATGGCATCCTGTTTTCGTAGATACGGTAGAAGC
GTCCTGGTATCCTGTCTTAGTAGATACGGTAGAAGCGTATCGAAGTTGAA
CGAGGCGAACAAGATTTGTGCCTGATCACAAGTAGCGCTTGGGGGCCTGT
CGGGCCTGTTGTTCGATAGAGCCCGTCCCAAGAGTAAAATGCAAGGGTAC
GAGGCATATCGAGGGCCAGTCGAGGTGCCTCTAAAGGTACTGGCTGTACC
ATTAAAAATAGTTCGAGGCAGTTTTGTGATTTCGAAGTCGTGTTTATCTT
CCAATCGGACTCGGGCAGTGCCAGTATAAGCCGACATTGCGATGACACAT
TTTAGTAAGTCTTACTACGAGTAATTCCAGGAATATGAAGCTATTACGGT
TTGTAGGGTAGGGTATACCTATTAATAGTATATTTCTCTTCAGTGCGCTA
GGGTTACTCTAGTGCTGTCGTAGCCCCGCTGCTCTGAAACAGATATCTCC
GTCTAATCCCCCCCCCCCTCAATCCCCGTTGTACTTGACACCAGGCCTTG
CGTCTACTCTATACCTTGGCTGCCGCGGATGACTGCCAGCGAGCCGCACT
CCGAACGCCCCGAGTGCTTCAGGTGATTATACCACACCTGCTGCCGGACG
ACGCCCATGAGCGGCGATCTCGCCCGAACCCTACCTTTTCTGAGGACTGG
AGGATTCACCCTGGAATCCGAGGTTCTAGGTGGCGCGGCAACTTCGAAGT
CTCCGACCCCGTTACCCTCCCCCCACCACCGAGCCTCGACCCTCCTCCGG
TGGTCGCAGACAACGCCGCCCGTCGGGTCCTGGCACAGCTGCTGCCAGAG
CGGGCCAGCAGCAATATGGCGACAGTGTTCGCGGCTTTTGCCGCGGCAAA
TCTGTTTCCTTCCTCCTCGGAAGAACCTCCAAGAGGGGGGCGGGACGGGA
CACGAGCGGCGGTGGATGCAGCGGCAGCGTTGTGCGGCGGGACAGAGTTC
GACCAATCTGGAAGGGGGAGACCAGGAAGGGAGTAGCCGGGGATCTACTC
ATCGGTGCCTGGACAATAGGTCCTCTACTCCTTTTGACTCGTGCGACGTT
GATCTGCGTGTGATCGGTCTTCTGCCAGTTTCTCTGCAGCAAATTAGTAA
TTTATCCTGACGATGTCCGCGGGCTGTATGACTTTCGATGCATGAAAAAC
ATATTTTTGGAGTGTGCGTTGTGGCTGCCATCTGCGGCAACGAAAAAATG
GCGGGAACCAGGTGATGGGCTCACTCCAGCCCTTGTAGACGGTATCATAG
TTGACTTGGTAAAATATTTCGTTAGGGTTTTTGTGCGGGGGGAAATATGA
GGATATAATGTACCGTCGTTCCAGCTTTTGCCCTGCAGCAACCAAATTTT
GCATATTTGCTGTATACCATTTTATTGAGCTAATTTTTTCGTGGTGTGTT
ATTGGTGTTGGGGTTCTGTACAATACAGTACTATACAGTACTATAATTGT
GTAATATAAATCAGGCGGTACTAGCGATGGGGGGGGGGGGGCTTGCTTGA
TTTTTCAGTTCGCTTGGGCGAATTTCGTATTTTGCCGGAGGAATTGTTTC
GCGACTCCTTTTAGAGATTTTTCTTGATCGAGCGGCTCGAGCGGCTTTTC
GACCTTAAACTAAGTGTGAAATAAACGACTGTATATTGGAGCAAACATGT
GTCATCGTGTCATGATAATATCTATCGTATTTTGCCTGTAAGGGTCACAA
CAAACACCTCTA
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Coding sequence (CDS) from alignment at H-elongata_contig78482:2..2863+

>mRNA_H-elongata_contig78482.15518.1 ID=mRNA_H-elongata_contig78482.15518.1|Name=mRNA_H-elongata_contig78482.15518.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2238bp|location=Sequence derived from alignment at H-elongata_contig78482:2..2863+ (Himanthalia elongata Himel1 dioecious)
ATGCTCGAGCTGCTGGACGTTCCCCGCGACGATGCCCTCCTCCTGCAGAT
GCTCGAGCTGCTGGACGTTCCCCGCGACGATGCCCTCCTCCTGCAGAGTC
TCCAGACCCTGCGAAACCTTTTGCTCGCGGTTCCTCTGTGGGCGCTCGAT
CGTGTCGAGGGAGGAGCCCATCCAGAGGATGATGGAGCAGGACCCACGGC
AGACGTAGGCGAAGGGTCAGGAGACGTTCCTCCCACCGTCGAAGAAAGCG
TAGAGCGTGCCGAGCAAGAACGAACCGTCGCCGTGACGGGCGTTGCGGAG
CAGACGGCTCCGAGGAACGTTCTGCCTTCCGCAGGGGATGGAGGGCATGT
AGACTGGAGGGGGTGGAGGGATCGGATTCCCGGGCAAGGAGGAAGAAACG
CTGTCGACCGGCAATTCTGGGGTGAGCTGGAAACGTCCCCCCCAAGAGAT
ACCCTTAACGGGAGTACATTAATCGGTCGGTCAGAATCAATGGGAGATGA
TTTTCAACCTGGGCAGCGTTTCCACCGAGGCGTGATGGAACGGGGGAGGG
GGTCATGGACGGTAAGGGGGAGGGACGAAGAGGCGGACTGGGGTTTGGCG
AAGCTGGTGGAAGCGGTGCTGTGCACGCTAGAAGGGTCTCCGACGGGAGA
GGATTGCGACGAAACGAGCTGTGCGAGTCTCCAGACCCTGCGAAACCTTT
TGCTCGCGGTTCCTCTGTGGGCGCTCGATCGTGTCGAGGGAGGAGCCCAT
CCAGAGGATGATGGAGCAGGACCCACGGCAGACGTAGGCGAAGGGTCAGG
AGACGTTCCTCCCACCGTCGAAGAAAGCGTAGAGCGTGCCGAGCAAGAAC
GAACCGTCGCCGTGACGGGCGTTGCGGAGCAGACGGCTCCGAGGAACGTT
CTGCCTTCCGCAGGGGATGGAGGGCATGTAGACTGGAGGGGGTGGAGGGA
TCGGATTCCCGGGCAAGGAGGAAGAAACGCTGTCGACCGGCAATTCTGGG
GTGAGCTGGAAACGTCCCCCCCAAGAGATACCCTTAACGGGAGTACATTA
ATCGGTCGGTCAGAATCAATGGGAGATGATTTTCAACCTGGGCAGCGTTT
CCACCGAGGCGTGATGGAACGGGGGAGGGGGTCATGGACGGTAAGGGGGA
GGGACGAAGAGGCGGACTGGGGTTTGGCGAAGCTGGTGGAAGCGGTGCTG
TGCACGCTAGAAGGGTCTCCGACGGGAGAGGATTGCGACGAAACGAGCTG
TGCGGCCTTGCGTCTACTCTATACCTTGGCTGCCGCGGATGACTGCCAGC
GAGCCGCACTCCGAACGCCCCGAGTGCTTCAGGTGATTATACCACACCTG
CTGCCGGACGACGCCCATGAGCGGCGATCTCGCCCGAACCCTACCTTTTC
TGAGGACTGGAGGATTCACCCTGGAATCCGAGGTTCTAGGTGGCGCGGCA
ACTTCGAAGTCTCCGACCCCGTTACCCTCCCCCCACCACCGAGCCTCGAC
CCTCCTCCGGTGGTCGCAGACAACGCCGCCCGTCGGGTCCTGGCACAGCT
GCTGCCAGAGCGGGCCAGCAGCAATATGGCGACAGTGTTCGCGGCTTTTG
CCGCGGCAAATCTGTTTCCTTCCTCCTCGGAAGAACCTCCAAGAGGGGGG
CGGGACGGGACACGAGCGGCGGTGGATGCAGCGGCAGCGTTGTGCGGCGG
GACAGAGTTCGACCAATCTGGAAGGGGGAGACCAGGAAGGGAGTAGGCCT
TGCGTCTACTCTATACCTTGGCTGCCGCGGATGACTGCCAGCGAGCCGCA
CTCCGAACGCCCCGAGTGCTTCAGGTGATTATACCACACCTGCTGCCGGA
CGACGCCCATGAGCGGCGATCTCGCCCGAACCCTACCTTTTCTGAGGACT
GGAGGATTCACCCTGGAATCCGAGGTTCTAGGTGGCGCGGCAACTTCGAA
GTCTCCGACCCCGTTACCCTCCCCCCACCACCGAGCCTCGACCCTCCTCC
GGTGGTCGCAGACAACGCCGCCCGTCGGGTCCTGGCACAGCTGCTGCCAG
AGCGGGCCAGCAGCAATATGGCGACAGTGTTCGCGGCTTTTGCCGCGGCA
AATCTGTTTCCTTCCTCCTCGGAAGAACCTCCAAGAGGGGGGCGGGACGG
GACACGAGCGGCGGTGGATGCAGCGGCAGCGTTGTGCGGCGGGACAGAGT
TCGACCAATCTGGAAGGGGGAGACCAGGAAGGGAGTAG
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