mRNA_H-elongata_contig7845.15515.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig7845.15515.1
Unique NamemRNA_H-elongata_contig7845.15515.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7845.15515.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig7845contigH-elongata_contig7845:4080..5059 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size870
Cds size450
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig7845.15515.1prot_H-elongata_contig7845.15515.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig7845 4128..4687 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931189.3125482-UTR-H-elongata_contig7845:4079..41271622931189.3125482-UTR-H-elongata_contig7845:4079..4127Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7845 4080..4127 -
1691679734.4384642-UTR-H-elongata_contig7845:4079..41271691679734.4384642-UTR-H-elongata_contig7845:4079..4127Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7845 4080..4127 -
1622931189.3701513-UTR-H-elongata_contig7845:4687..50591622931189.3701513-UTR-H-elongata_contig7845:4687..5059Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7845 4688..5059 -
1691679734.4795702-UTR-H-elongata_contig7845:4687..50591691679734.4795702-UTR-H-elongata_contig7845:4687..5059Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7845 4688..5059 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931189.333253-CDS-H-elongata_contig7845:4127..45071622931189.333253-CDS-H-elongata_contig7845:4127..4507Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7845 4128..4507 -
1691679734.4507627-CDS-H-elongata_contig7845:4127..45071691679734.4507627-CDS-H-elongata_contig7845:4127..4507Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7845 4128..4507 -
1622931189.3519154-CDS-H-elongata_contig7845:4617..46871622931189.3519154-CDS-H-elongata_contig7845:4617..4687Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7845 4618..4687 -
1691679734.4647853-CDS-H-elongata_contig7845:4617..46871691679734.4647853-CDS-H-elongata_contig7845:4617..4687Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7845 4618..4687 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig7845.15515.1

>prot_H-elongata_contig7845.15515.1 ID=prot_H-elongata_contig7845.15515.1|Name=mRNA_H-elongata_contig7845.15515.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=150bp
MILSKLHRCHSPRTGHRRFLNWRPQIAVLSFRYRAPPLLELATFLEKTVL
PDHSTLLPLLTLNAPPLDSAVFEMNCDSESQIAVLSSRYRAPPFPALAVF
LEKVVFAAHDTLLLYIKYKAPPSYALLARNVDADVQMALIPPTMYSAPP*
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mRNA from alignment at H-elongata_contig7845:4080..5059-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig7845.15515.1 ID=mRNA_H-elongata_contig7845.15515.1|Name=mRNA_H-elongata_contig7845.15515.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=980bp|location=Sequence derived from alignment at H-elongata_contig7845:4080..5059- (Himanthalia elongata Himel1 dioecious)
TGTTCGTAAAGCTCGTGGTGCCCTTTATATCGATAATCGATTCTTCGTCA
CTCACCTCCGAGTCGAGTACGCTCGACCCCACCGCACCACCGTTAAATAG
AGCACTATTAGAGGTGAAGTTGGTTTCTTCGCGAAATTCTACACTTACGC
CATATGTGGCAAAGAGGGCTCCTCCGTTCTGAGCGGTGTTGTTAACGAAT
TGCGCATTGCTGCTCCATAGAAGATATCCGTTATTACTGGAATACACCGC
ACCCCCATCAAATTGAGCGATATTTGCCGAAAACCGTGATGGTGCTTTCC
ACGTAGCAGTGCTGTTATACACCACGTACATCGCCCCTCCGTGGGATGAA
GCAAAATTGGTGAGGAATTGTGATGATCCTGTCCAAACTGCACCGCTGCC
ACTCGCCACGCACAGGGCACCGCCGCTTCTTGAACTGGCGACGTTCTTAG
AAAAAACCGTTTCACCAGCCCATAGCACTTTGCTGCCACTCCTAACGCTT
AACGCCCCACCTTCGGATTTAGCAGTATTTGAGATGAATTGTGATTCCGA
AGCCCAAATTGCAGTGCTATCTTTCAGATACAGGGCACCGCCGCTTCTTG
AACTGGCGACGTTCTTAGAAAAAACTGTTTTACCAGACCATAGCACGTTG
CTGCCACTCTTAACGCTTAACGCCCCACCTTTGGATTCAGCAGTATTTGA
GATGAATTGTGATTCCGAATCCCAGATTGCAGTGCTATCTTCGAGATACA
GGGCACCGCCGTTTCCTGCTTTGGCAGTATTCTTAGAAAAGGTCGTATTT
GCTGCCCACGATACATTACTGTTGTACATCAAATACAAGGCCCCTCCTTC
GTATGCGCTATTAGCGAGGAATGTTGATGCCGACGTCCAGATGGCCTTGA
TACCACCGACCATGTACAGCGCCCCCCCATAATATGCACTATTGGCGACG
AATTGTGATACCGCGTTCCAAGAGGCACTA
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Coding sequence (CDS) from alignment at H-elongata_contig7845:4080..5059-

>mRNA_H-elongata_contig7845.15515.1 ID=mRNA_H-elongata_contig7845.15515.1|Name=mRNA_H-elongata_contig7845.15515.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=900bp|location=Sequence derived from alignment at H-elongata_contig7845:4080..5059- (Himanthalia elongata Himel1 dioecious)
ATGATCCTGTCCAAACTGCACCGCTGCCACTCGCCACGCACAGGGCACCG
CCGCTTCTTGAACTGGCGACATGATCCTGTCCAAACTGCACCGCTGCCAC
TCGCCACGCACAGGGCACCGCCGCTTCTTGAACTGGCGACCCCAAATTGC
AGTGCTATCTTTCAGATACAGGGCACCGCCGCTTCTTGAACTGGCGACGT
TCTTAGAAAAAACTGTTTTACCAGACCATAGCACGTTGCTGCCACTCTTA
ACGCTTAACGCCCCACCTTTGGATTCAGCAGTATTTGAGATGAATTGTGA
TTCCGAATCCCAGATTGCAGTGCTATCTTCGAGATACAGGGCACCGCCGT
TTCCTGCTTTGGCAGTATTCTTAGAAAAGGTCGTATTTGCTGCCCACGAT
ACATTACTGTTGTACATCAAATACAAGGCCCCTCCTTCGTATGCGCTATT
AGCGAGGAATGTTGATGCCGACGTCCAGATGGCCTTGATACCACCGACCA
TGTACAGCGCCCCCCCATAACCCAAATTGCAGTGCTATCTTTCAGATACA
GGGCACCGCCGCTTCTTGAACTGGCGACGTTCTTAGAAAAAACTGTTTTA
CCAGACCATAGCACGTTGCTGCCACTCTTAACGCTTAACGCCCCACCTTT
GGATTCAGCAGTATTTGAGATGAATTGTGATTCCGAATCCCAGATTGCAG
TGCTATCTTCGAGATACAGGGCACCGCCGTTTCCTGCTTTGGCAGTATTC
TTAGAAAAGGTCGTATTTGCTGCCCACGATACATTACTGTTGTACATCAA
ATACAAGGCCCCTCCTTCGTATGCGCTATTAGCGAGGAATGTTGATGCCG
ACGTCCAGATGGCCTTGATACCACCGACCATGTACAGCGCCCCCCCATAA
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