mRNA_H-elongata_contig78401.15509.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig78401.15509.1
Unique NamemRNA_H-elongata_contig78401.15509.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig78401.15509.1 vs. uniprot
Match: D7G1Z7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1Z7_ECTSI)

HSP 1 Score: 87.0 bits (214), Expect = 5.840e-21
Identity = 42/51 (82.35%), Postives = 46/51 (90.20%), Query Frame = 1 
Query:    1 HKFTVTVKYVRREIRSLTDRDREKFFNAVSVLQRVPSAVGQQVYGKKYYSK 153
            H+  VTVKYVRREIR LTDRDRE FFNAVSVLQRVPSAVG+++YG KYYSK
Sbjct:   45 HELEVTVKYVRREIRDLTDRDRETFFNAVSVLQRVPSAVGREIYGDKYYSK 95
[Close]
BLAST of mRNA_H-elongata_contig78401.15509.1 vs. uniprot
Match: A0A6H5JNJ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNJ2_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 2.170e-20
Identity = 43/51 (84.31%), Postives = 47/51 (92.16%), Query Frame = 1 
Query:    1 HKFTVTVKYVRREIRSLTDRDREKFFNAVSVLQRVPSAVGQQVYGKKYYSK 153
            ++F VTVKYVRREIR+LTDRDRE FFNAVSVLQRVPSAVG+ VYG KYYSK
Sbjct:   70 YEFAVTVKYVRREIRALTDRDRETFFNAVSVLQRVPSAVGRAVYGDKYYSK 120
[Close]
BLAST of mRNA_H-elongata_contig78401.15509.1 vs. uniprot
Match: D7FSN5_ECTSI (Putative scytonemin-related tyrosinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSN5_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 4.450e-20
Identity = 44/51 (86.27%), Postives = 47/51 (92.16%), Query Frame = 1 
Query:    1 HKFTVTVKYVRREIRSLTDRDREKFFNAVSVLQRVPSAVGQQVYGKKYYSK 153
            HKF VTVKYVRREIR LTDRDRE FFNAVSVLQRVPSAVG+++YG KYYSK
Sbjct:   95 HKFEVTVKYVRREIRDLTDRDRETFFNAVSVLQRVPSAVGREIYGDKYYSK 145
[Close]
BLAST of mRNA_H-elongata_contig78401.15509.1 vs. uniprot
Match: A0A6H5K5A2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A2_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 2.360e-19
Identity = 43/51 (84.31%), Postives = 47/51 (92.16%), Query Frame = 1 
Query:    1 HKFTVTVKYVRREIRSLTDRDREKFFNAVSVLQRVPSAVGQQVYGKKYYSK 153
            ++F VTVKYVRREIR+LTDRDRE FFNAVSVLQRVPSAVG+ VYG KYYSK
Sbjct:   81 YEFAVTVKYVRREIRALTDRDRETFFNAVSVLQRVPSAVGRAVYGDKYYSK 131
[Close]
BLAST of mRNA_H-elongata_contig78401.15509.1 vs. uniprot
Match: A0A6H5KKI9_9PHAE (TYR protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKI9_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 7.400e-19
Identity = 42/49 (85.71%), Postives = 45/49 (91.84%), Query Frame = 1 
Query:    7 FTVTVKYVRREIRSLTDRDREKFFNAVSVLQRVPSAVGQQVYGKKYYSK 153
            F V VKYVRREIR+LTDRDRE FFNAVS++QRVPSAVGQQVYG KYYSK
Sbjct:  286 FVVVVKYVRREIRTLTDRDRETFFNAVSIMQRVPSAVGQQVYGSKYYSK 334
[Close]
BLAST of mRNA_H-elongata_contig78401.15509.1 vs. uniprot
Match: D7G1K2_ECTSI (Hypothetical tyrosinase-like protein F21C3.2 in chromosome I, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1K2_ECTSI)

HSP 1 Score: 87.0 bits (214), Expect = 1.000e-18
Identity = 41/49 (83.67%), Postives = 45/49 (91.84%), Query Frame = 1 
Query:    7 FTVTVKYVRREIRSLTDRDREKFFNAVSVLQRVPSAVGQQVYGKKYYSK 153
            F V VKY+RREIR+LTDRDRE FFNAVS++QRVPSAVGQQVYG KYYSK
Sbjct:   93 FVVVVKYIRREIRTLTDRDRETFFNAVSIMQRVPSAVGQQVYGSKYYSK 141
[Close]
BLAST of mRNA_H-elongata_contig78401.15509.1 vs. uniprot
Match: D8LAY9_ECTSI (Putative scytonemin-related tyrosinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAY9_ECTSI)

HSP 1 Score: 87.0 bits (214), Expect = 1.010e-18
Identity = 43/51 (84.31%), Postives = 47/51 (92.16%), Query Frame = 1 
Query:    1 HKFTVTVKYVRREIRSLTDRDREKFFNAVSVLQRVPSAVGQQVYGKKYYSK 153
            ++F VTVKYVRREIRSLTDRDRE FFNAV+VLQRVPSAVG+ VYG KYYSK
Sbjct:  198 YEFAVTVKYVRREIRSLTDRDRETFFNAVAVLQRVPSAVGRAVYGDKYYSK 248
[Close]
BLAST of mRNA_H-elongata_contig78401.15509.1 vs. uniprot
Match: A0A6H5JTC5_9PHAE (TYR protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTC5_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 1.010e-18
Identity = 43/51 (84.31%), Postives = 47/51 (92.16%), Query Frame = 1 
Query:    1 HKFTVTVKYVRREIRSLTDRDREKFFNAVSVLQRVPSAVGQQVYGKKYYSK 153
            ++F VTVKYVRREIR+LTDRDRE FFNAVSVLQRVPSAVG+ VYG KYYSK
Sbjct:  269 YEFAVTVKYVRREIRALTDRDRETFFNAVSVLQRVPSAVGRAVYGDKYYSK 319
[Close]
BLAST of mRNA_H-elongata_contig78401.15509.1 vs. uniprot
Match: A0A6H5K0F0_9PHAE (Tyrosinase_Cu-bd domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0F0_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 1.460e-18
Identity = 42/51 (82.35%), Postives = 47/51 (92.16%), Query Frame = 1 
Query:    1 HKFTVTVKYVRREIRSLTDRDREKFFNAVSVLQRVPSAVGQQVYGKKYYSK 153
            ++F VTVKYVRREIR+LTDRDRE FFNAVSVLQRVPSAVG+ +YG KYYSK
Sbjct:   68 YEFVVTVKYVRREIRALTDRDRETFFNAVSVLQRVPSAVGRALYGDKYYSK 118
[Close]
BLAST of mRNA_H-elongata_contig78401.15509.1 vs. uniprot
Match: A0A6H5JFW1_9PHAE (TYR protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFW1_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 1.850e-18
Identity = 41/50 (82.00%), Postives = 46/50 (92.00%), Query Frame = 1 
Query:    1 HKFTVTVKYVRREIRSLTDRDREKFFNAVSVLQRVPSAVGQQVYGKKYYS 150
            H+F VTVKYVRREIR LTDRDRE FFNA+SVLQRVPSAVG+++YG KYYS
Sbjct:   41 HEFEVTVKYVRREIRDLTDRDRETFFNAMSVLQRVPSAVGREIYGDKYYS 90
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig78401.15509.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G1Z7_ECTSI5.840e-2182.35Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JNJ2_9PHAE2.170e-2084.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FSN5_ECTSI4.450e-2086.27Putative scytonemin-related tyrosinase n=1 Tax=Ect... [more]
A0A6H5K5A2_9PHAE2.360e-1984.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KKI9_9PHAE7.400e-1985.71TYR protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D7G1K2_ECTSI1.000e-1883.67Hypothetical tyrosinase-like protein F21C3.2 in ch... [more]
D8LAY9_ECTSI1.010e-1884.31Putative scytonemin-related tyrosinase n=1 Tax=Ect... [more]
A0A6H5JTC5_9PHAE1.010e-1884.31TYR protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
A0A6H5K0F0_9PHAE1.460e-1882.35Tyrosinase_Cu-bd domain-containing protein n=1 Tax... [more]
A0A6H5JFW1_9PHAE1.850e-1882.00TYR protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig78401contigH-elongata_contig78401:5..157 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score87.0
Seed ortholog evalue2.7e-15
Seed eggNOG ortholog2880.D7FSM9
EggNOG free text desc.Common central domain of tyrosinase
EggNOG OGs2CZRH@1,2SBDH@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size153
Cds size153
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931188.819014-CDS-H-elongata_contig78401:4..1571622931188.819014-CDS-H-elongata_contig78401:4..157Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78401 5..157 -
1691679734.2338743-CDS-H-elongata_contig78401:4..1571691679734.2338743-CDS-H-elongata_contig78401:4..157Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78401 5..157 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig78401.15509.1prot_H-elongata_contig78401.15509.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig78401 5..157 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig78401.15509.1

>prot_H-elongata_contig78401.15509.1 ID=prot_H-elongata_contig78401.15509.1|Name=mRNA_H-elongata_contig78401.15509.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=51bp
HKFTVTVKYVRREIRSLTDRDREKFFNAVSVLQRVPSAVGQQVYGKKYYS
K
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mRNA from alignment at H-elongata_contig78401:5..157-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig78401.15509.1 ID=mRNA_H-elongata_contig78401.15509.1|Name=mRNA_H-elongata_contig78401.15509.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=153bp|location=Sequence derived from alignment at H-elongata_contig78401:5..157- (Himanthalia elongata Himel1 dioecious)
CACAAGTTTACCGTGACGGTCAAGTACGTTCGGCGAGAGATTCGGTCGCT
GACGGACCGCGATCGTGAGAAGTTCTTCAACGCCGTGTCGGTGCTGCAAC
GCGTGCCCAGTGCCGTGGGGCAGCAGGTCTACGGGAAGAAGTACTACAGC
AAG
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Coding sequence (CDS) from alignment at H-elongata_contig78401:5..157-

>mRNA_H-elongata_contig78401.15509.1 ID=mRNA_H-elongata_contig78401.15509.1|Name=mRNA_H-elongata_contig78401.15509.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=306bp|location=Sequence derived from alignment at H-elongata_contig78401:5..157- (Himanthalia elongata Himel1 dioecious)
CACAAGTTTACCGTGACGGTCAAGTACGTTCGGCGAGAGATTCGGTCGCT
GACGGACCGCGATCGTGAGAAGTTCTTCAACGCCGTGTCGGTGCTGCAAC
GCGTGCCCAGTGCCGTGGGGCAGCAGGTCTACGGGAAGAAGTACTACAGC
AAGCACAAGTTTACCGTGACGGTCAAGTACGTTCGGCGAGAGATTCGGTC
GCTGACGGACCGCGATCGTGAGAAGTTCTTCAACGCCGTGTCGGTGCTGC
AACGCGTGCCCAGTGCCGTGGGGCAGCAGGTCTACGGGAAGAAGTACTAC
AGCAAG
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