mRNA_H-elongata_contig7835.15504.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig7835.15504.1 vs. uniprot
Match: A0A6H5JUS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUS2_9PHAE) HSP 1 Score: 183 bits (465), Expect = 7.120e-55 Identity = 89/161 (55.28%), Postives = 119/161 (73.91%), Query Frame = 1
Query: 4 KVSSGDSSPAARRISADNAQDLERTLFLIKGAKVVVTRNL*QEAGLVNGRQGDVQDIVYDEGKTAPEQPRYVVVKLDGYTRPQWSDEDWYRDCIPIAPVETSWSVLDQDHEGGTMTRIQFLLKLCWAITMYKSQGQTLSKAVIDLGKKEACTGLTFVCLSH 486
+VS+ + ARR +AD A+ LER L+L KGAKV++++NL Q+ GLVNG +G+V ++V + P+ P YVVVK +GY+ +WS ++ YR C+PI+PV+T+W +GGT R Q L+LCWAITM+KSQGQTL+KAVIDLG KEACTGLTFVCLS
Sbjct: 76 RVSAVHTGANARRATADTAEGLERDLYLAKGAKVMLSKNLYQQVGLVNGIRGEVVELVCADDAPPPKLPLYVVVKFEGYSGGEWSSQERYRRCVPISPVDTTWQ------DGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSR 230
BLAST of mRNA_H-elongata_contig7835.15504.1 vs. uniprot
Match: A0A6H5L976_9PHAE (ATP-dependent DNA helicase n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L976_9PHAE) HSP 1 Score: 183 bits (465), Expect = 1.320e-50 Identity = 89/161 (55.28%), Postives = 119/161 (73.91%), Query Frame = 1
Query: 4 KVSSGDSSPAARRISADNAQDLERTLFLIKGAKVVVTRNL*QEAGLVNGRQGDVQDIVYDEGKTAPEQPRYVVVKLDGYTRPQWSDEDWYRDCIPIAPVETSWSVLDQDHEGGTMTRIQFLLKLCWAITMYKSQGQTLSKAVIDLGKKEACTGLTFVCLSH 486
+VS+ + ARR +AD A+ LER L+L KGAKV++++NL Q+ GLVNG +G+V ++V + P+ P YVVVK +GY+ +WS ++ YR C+PI+PV+T+W +GGT R Q L+LCWAITM+KSQGQTL+KAVIDLG KEACTGLTFVCLS
Sbjct: 1381 RVSAVHTGANARRATADTAEGLERDLYLAKGAKVMLSKNLYQQVGLVNGIRGEVVELVCADDAPPPKLPLYVVVKFEGYSGGEWSSQERYRRCVPISPVDTTWQ------DGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSR 1535
BLAST of mRNA_H-elongata_contig7835.15504.1 vs. uniprot
Match: A0A6H5JFG8_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFG8_9PHAE) HSP 1 Score: 176 bits (445), Expect = 4.660e-50 Identity = 83/145 (57.24%), Postives = 109/145 (75.17%), Query Frame = 1
Query: 52 DNAQDLERTLFLIKGAKVVVTRNL*QEAGLVNGRQGDVQDIVYDEGKTAPEQPRYVVVKLDGYTRPQWSDEDWYRDCIPIAPVETSWSVLDQDHEGGTMTRIQFLLKLCWAITMYKSQGQTLSKAVIDLGKKEACTGLTFVCLSH 486
D A+ LER L+L KGAKV++++NL Q+ GLVNG +G+V ++V + P+ P YVVVK +GY+ +WS ++ YR C+PI+PV+T+W +GGT R Q L+LCWAITM+KSQGQTL+KAVIDLG KEACTGLTFVCLS
Sbjct: 266 DTAEGLERDLYLAKGAKVMLSKNLYQQVGLVNGIRGEVVELVCADDAPPPKLPLYVVVKFEGYSGGEWSSQERYRRCVPISPVDTTWQ------DGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSR 404
BLAST of mRNA_H-elongata_contig7835.15504.1 vs. uniprot
Match: A0A6H5K4U7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4U7_9PHAE) HSP 1 Score: 153 bits (386), Expect = 2.940e-41 Identity = 71/127 (55.91%), Postives = 95/127 (74.80%), Query Frame = 1
Query: 106 VVTRNL*QEAGLVNGRQGDVQDIVYDEGKTAPEQPRYVVVKLDGYTRPQWSDEDWYRDCIPIAPVETSWSVLDQDHEGGTMTRIQFLLKLCWAITMYKSQGQTLSKAVIDLGKKEACTGLTFVCLSH 486
++++NL Q+ GLVNG +G+V ++V + P+ P YVVVK +GY+ +WS ++ YR C+PI+PV+T+W +GGT R Q L+LCWAITM+KSQGQTL+KAVIDLG KEACTGLTFVCLS
Sbjct: 1 MLSKNLYQQVGLVNGIRGEVVELVCADDAPPPKLPLYVVVKFEGYSGGEWSSQERYRRCVPISPVDTTWQ------DGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSR 121
BLAST of mRNA_H-elongata_contig7835.15504.1 vs. uniprot
Match: UPI0010697BE7 (ATP-dependent DNA helicase PIF1-like n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI0010697BE7) HSP 1 Score: 120 bits (301), Expect = 3.690e-30 Identity = 67/159 (42.14%), Postives = 93/159 (58.49%), Query Frame = 1
Query: 4 KVSSGDSSPAARRISADNAQDLERTLFLIKGAKVVVTRNL*QEAGLVNGRQGDVQDIVYDEGKTAPEQPRYVVVKLDGYTRPQWSDEDWYRDCIPIAPVETSWSVLDQDHEGGTMTRIQFLLKLCWAITMYKSQGQTLSKAVIDLGKKEACTGLTFVCL 480
++++ SS AR+I AD L+ L+L KGAK+++T NL GL NG G V+ +Y+ P+ P VVVK D Y P + +PI P+ + LD HE R Q L+L WAIT++KSQG TLSKA I++GKKE+C G+T+V L
Sbjct: 149 QINARHSSATARKIPADEFSGLQPVLYLAKGAKIMLTMNLWPTVGLCNGATGTVEYFIYENNHHPPDLPIAVVVKFDNYRGPSLCQT--LSNYVPICPINVTTQSLDGFHE-----RQQLPLRLAWAITIHKSQGLTLSKAWINIGKKESCPGMTYVAL 300
BLAST of mRNA_H-elongata_contig7835.15504.1 vs. uniprot
Match: UPI00077A236B (ATP-dependent DNA helicase PIF1-like n=1 Tax=Acropora digitifera TaxID=70779 RepID=UPI00077A236B) HSP 1 Score: 120 bits (301), Expect = 9.830e-30 Identity = 66/160 (41.25%), Postives = 95/160 (59.38%), Query Frame = 1
Query: 7 VSSGDSSPAARRISADNAQDLERTLFLIKGAKVVVTRNL*QEAGLVNGRQGDVQDIVYDEGKTAPEQPRYVVVKLDGYTRPQWSDEDWYRDCIPIAPVETSWSVLDQDHEGGTMTRIQFLLKLCWAITMYKSQGQTLSKAVIDLGKKEACTGLTFVCLSH 486
+++ SS A+ IS++ +LE T+FL KGAKV++T NL GL NG G + D++Y+ P+ P V+V + Y+ P SD C+PI PV S LD HE R Q LKL +A+T++KSQG T+SKA ID+GK E G+++V +S
Sbjct: 154 INARHSSAIAKNISSEEMSNLEPTVFLAKGAKVMLTMNLWSSVGLCNGATGTILDLIYESNHQPPDLPIAVIVHFNDYSGPSISDT--LPSCVPICPVTVSIQSLDGHHE-----RQQLPLKLAYALTIHKSQGLTMSKAWIDIGKSEKTPGVSYVAISR 306
BLAST of mRNA_H-elongata_contig7835.15504.1 vs. uniprot
Match: A0A2Z6QFX4_9GLOM (ATP-dependent DNA helicase n=2 Tax=Rhizophagus clarus TaxID=94130 RepID=A0A2Z6QFX4_9GLOM) HSP 1 Score: 120 bits (301), Expect = 1.510e-28 Identity = 62/151 (41.06%), Postives = 94/151 (62.25%), Query Frame = 1
Query: 34 ARRISADNAQDLERTLFLIKGAKVVVTRNL*QEAGLVNGRQGDVQDIVYDEGKTAPEQPRYVVVKLDGYTRPQWSDEDWYRDCIPIAPVETSWSVLDQDHEGGTMTRIQFLLKLCWAITMYKSQGQTLSKAVIDLGKKEACTGLTFVCLSH 486
A++ +D A LE + L +GA+V++T NL + GLVNG G VQDI+++E + P P V++ D Y P + R +PIAP++ +W+ G + +R+Q ++L WAIT++KSQG TL KA+IDLG+KE GL+FV +S
Sbjct: 1360 AKKADSDTAHGLEAYILLARGARVMLTANLQTDIGLVNGSMGTVQDIIFNEDQGPPCLPIAVLISFDNYKGPTITSLKGER-VVPIAPIQRTWT----GKSGVSCSRLQIPIRLAWAITVHKSQGLTLQKAIIDLGEKEFTAGLSFVAVSR 1505
BLAST of mRNA_H-elongata_contig7835.15504.1 vs. uniprot
Match: A0A6S7KC61_PARCT (ATP-dependent DNA helicase PIF1 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7KC61_PARCT) HSP 1 Score: 113 bits (282), Expect = 1.870e-28 Identity = 60/146 (41.10%), Postives = 84/146 (57.53%), Query Frame = 1
Query: 49 ADNAQDLERTLFLIKGAKVVVTRNL*QEAGLVNGRQGDVQDIVYDEGKTAPEQPRYVVVKLDGYTRPQWSDEDWYRDCIPIAPVETSWSVLDQDHEGGTMTRIQFLLKLCWAITMYKSQGQTLSKAVIDLGKKEACTGLTFVCLSH 486
+D LE +FL KGA+V++T NL GL NG G + DIV+ + P+ P V+V + Y P +S+E C+PI P+ S EGG R Q L+L WA+T++KSQG TLSKA ID+GK E G+++V +S
Sbjct: 3 SDEMSGLEPVVFLPKGARVMLTMNLWSSVGLCNGATGTIVDIVFQNNQNPPDLPIAVIVNFENYRGPHFSEERPM--CVPICPITVS-----SQTEGGFHERQQLPLRLAWALTIHKSQGLTLSKAWIDVGKSERTAGVSYVAISR 141
BLAST of mRNA_H-elongata_contig7835.15504.1 vs. uniprot
Match: UPI000C71C813 (uncharacterized protein LOC111694302 n=1 Tax=Trichogramma pretiosum TaxID=7493 RepID=UPI000C71C813) HSP 1 Score: 119 bits (299), Expect = 2.370e-28 Identity = 66/153 (43.14%), Postives = 91/153 (59.48%), Query Frame = 1
Query: 28 PAARRISADNAQDLERTLFLIKGAKVVVTRNL*QEAGLVNGRQGDVQDIVYDEGKTAPEQPRYVVVKLDGYTRPQWSDEDWYRDCIPIAPVETSWSVLDQDHEGGTMTRIQFLLKLCWAITMYKSQGQTLSKAVIDLGKKEACTGLTFVCLSH 486
P R I D+ L+ L+L G+++++ N+ GLVNG G V+ IVYDE P PRY++VK + YT P D D PI P+ SW D +G T +R QF + L +A+T++KSQG TL+ AVID+G KE C+GLT+V LS
Sbjct: 493 PNVRSIDGDSC-GLDAQLYLAIGSRIILRHNVWVAGGLVNGSVGTVKAIVYDENVEPPNLPRYILVKFESYTGPCVID-----DLFPIVPIVRSW-----DCKGVTFSRKQFPISLGYAVTIHKSQGLTLASAVIDIGTKEFCSGLTYVALSR 634
BLAST of mRNA_H-elongata_contig7835.15504.1 vs. uniprot
Match: A0A015JB11_RHIIW (Pif1p n=1 Tax=Rhizophagus irregularis (strain DAOM 197198w) TaxID=1432141 RepID=A0A015JB11_RHIIW) HSP 1 Score: 114 bits (285), Expect = 2.990e-28 Identity = 61/151 (40.40%), Postives = 92/151 (60.93%), Query Frame = 1
Query: 34 ARRISADNAQDLERTLFLIKGAKVVVTRNL*QEAGLVNGRQGDVQDIVYDEGKTAPEQPRYVVVKLDGYTRPQWSDEDWYRDCIPIAPVETSWSVLDQDHEGGTMTRIQFLLKLCWAITMYKSQGQTLSKAVIDLGKKEACTGLTFVCLSH 486
A + + A+ LE L L +GA+V++ NL E GLVNG G VQ+I+++E ++ P P V+++ D Y P E+ R +P++P+ SW + + T +R+Q + L WAIT++KSQG TL KAVID+GKKE G +FV +S
Sbjct: 70 ASKADPELAKGLEAQLLLARGARVMLRINLWTEVGLVNGSLGTVQEIIFEENQSPPSLPIAVLIEFDNYYGPAIVTEEGKR-LVPVSPIRYSW-----EGKKVTCSRLQVPICLAWAITIHKSQGLTLQKAVIDIGKKEYAAGQSFVAISR 214 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7835.15504.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig7835.15504.1 >prot_H-elongata_contig7835.15504.1 ID=prot_H-elongata_contig7835.15504.1|Name=mRNA_H-elongata_contig7835.15504.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=47bp MTRIQFLLKLCWAITMYKSQGQTLSKAVIDLGKKEACTGLTFVCLSHback to top mRNA from alignment at H-elongata_contig7835:9011..9496+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig7835.15504.1 ID=mRNA_H-elongata_contig7835.15504.1|Name=mRNA_H-elongata_contig7835.15504.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=486bp|location=Sequence derived from alignment at H-elongata_contig7835:9011..9496+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig7835:9011..9496+ >mRNA_H-elongata_contig7835.15504.1 ID=mRNA_H-elongata_contig7835.15504.1|Name=mRNA_H-elongata_contig7835.15504.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=282bp|location=Sequence derived from alignment at H-elongata_contig7835:9011..9496+ (Himanthalia elongata Himel1 dioecious)back to top |