mRNA_H-elongata_contig78265.15496.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig78265.15496.1
Unique NamemRNA_H-elongata_contig78265.15496.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig78265.15496.1 vs. uniprot
Match: D7FIK1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIK1_ECTSI)

HSP 1 Score: 85.5 bits (210), Expect = 6.070e-18
Identity = 60/88 (68.18%), Postives = 66/88 (75.00%), Query Frame = 1 
Query:    1 YVLGCLGFIPGTVAYVFIGTTASNLLGDXXXXXXXXXXXXXXXXXXXXX--GAIATVIAVVLISIYSKRALNKVLEEQNGEEEAEDAG 258
            Y +GC+GFIPGTVA+VFIGTTAS LLGD    XXXXXXXXX          G IATVIAVVLISIY+KRALNKVLEE   E+EA + G
Sbjct:  210 YAIGCVGFIPGTVAFVFIGTTASGLLGDDSEEXXXXXXXXXGTVQLIVGIVGGIATVIAVVLISIYAKRALNKVLEEDRVEQEALEMG 297
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BLAST of mRNA_H-elongata_contig78265.15496.1 vs. uniprot
Match: A0A7S3YEX9_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YEX9_HETAK)

HSP 1 Score: 62.0 bits (149), Expect = 2.150e-9
Identity = 50/86 (58.14%), Postives = 59/86 (68.60%), Query Frame = 1 
Query:    1 YVLGCLGFIPGTVAYVFIGTTASNLLGDXXXXXXXXXXXXXXXXXXXXX-------------GAIATVIAVVLISIYSKRALNKVL 219
            YVLGC+G +PGTVAYVFIGT+A+ LLGD         XXXXXXXXXXXX             GA ATV+AVVLI++ S+RAL +VL
Sbjct:  216 YVLGCVGMLPGTVAYVFIGTSAAGLLGDADDGSQESEXXXXXXXXXXXXXXXRLVNIVVLVVGAAATVLAVVLITVASRRALRRVL 301
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BLAST of mRNA_H-elongata_contig78265.15496.1 vs. uniprot
Match: A0A7S2Y1P9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y1P9_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 1.090e-8
Identity = 41/93 (44.09%), Postives = 49/93 (52.69%), Query Frame = 1 
Query:    1 YVLGCLGFIPGTVAYVFIGTTASNLLGDXXXXXXXXXXXXXXXXXXXXX-------------GAIATVIAVVLISIYSKRALNKVLEEQNGEE 240
            Y +GCLG IPGTVAYVFIG++AS + GD                                  GAIATVIAV LIS Y+K+ALN++L E   EE
Sbjct:  192 YTIGCLGIIPGTVAYVFIGSSASGI-GDMKGNDEEQNDNTKDADGEESSSDNDTVFLIVIIVGAIATVIAVFLISWYAKKALNRILNEVELEE 283
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BLAST of mRNA_H-elongata_contig78265.15496.1 vs. uniprot
Match: A0A448ZNF0_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZNF0_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 3.430e-6
Identity = 48/78 (61.54%), Postives = 58/78 (74.36%), Query Frame = 1 
Query:    1 YVLGCLGFIPGTVAYVFIGTTASNL--LGDXXXXXXXXXXXXXXXXXXXXXGAIATVIAVVLISIYSKRALNKVLEEQ 228
            YVL CLG +PGT+ YVF+G +A +L  LG    XXXXXXXXXXXXXXXXX G +   +AV L S Y+K+ LNKVLEE+
Sbjct:  258 YVLACLGMLPGTIVYVFLGASAGSLAELGGDEDXXXXXXXXXXXXXXXXXVGVVFGFLAVGLTSYYAKQELNKVLEEE 335
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig78265.15496.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FIK1_ECTSI6.070e-1868.18Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S3YEX9_HETAK2.150e-958.14Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2Y1P9_9STRA1.090e-844.09Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A448ZNF0_9STRA3.430e-661.54Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig78265contigH-elongata_contig78265:3..260 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score85.9
Seed ortholog evalue1e-14
Seed eggNOG ortholog2880.D7FIK1
KEGG rclassRC00046
KEGG koko:K00486
KEGG ReactionR01960
KEGG Pathwayko00380,ko01100,map00380,map01100
KEGG ModuleM00038
EggNOG free text desc.canonical Wnt signaling pathway involved in osteoblast differentiation
EggNOG OGsCOG0398@1,KOG3140@2759
EC1.14.13.9
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionMajor facilitator superfamily domain
Ec32 orthologEc-27_000060.1
Exons1
Model size258
Cds size258
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931187.6190703-CDS-H-elongata_contig78265:2..2601622931187.6190703-CDS-H-elongata_contig78265:2..260Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78265 3..260 +
1691679733.763131-CDS-H-elongata_contig78265:2..2601691679733.763131-CDS-H-elongata_contig78265:2..260Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78265 3..260 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig78265.15496.1prot_H-elongata_contig78265.15496.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig78265 3..260 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig78265.15496.1

>prot_H-elongata_contig78265.15496.1 ID=prot_H-elongata_contig78265.15496.1|Name=mRNA_H-elongata_contig78265.15496.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=86bp
YVLGCLGFIPGTVAYVFIGTTASNLLGDDDEEEEDDGGSSTVQLIVIIVG
AIATVIAVVLISIYSKRALNKVLEEQNGEEEAEDAG
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mRNA from alignment at H-elongata_contig78265:3..260+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig78265.15496.1 ID=mRNA_H-elongata_contig78265.15496.1|Name=mRNA_H-elongata_contig78265.15496.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=258bp|location=Sequence derived from alignment at H-elongata_contig78265:3..260+ (Himanthalia elongata Himel1 dioecious)
TACGTCCTCGGCTGCCTCGGCTTTATCCCTGGTACTGTGGCATACGTTTT
CATCGGCACCACGGCGTCGAACCTGCTGGGAGACGACGATGAGGAGGAAG
AAGACGACGGTGGAAGCTCTACCGTCCAGCTGATCGTGATTATCGTAGGC
GCGATTGCTACGGTAATCGCGGTGGTTCTAATCAGCATCTATTCGAAGCG
CGCGCTGAACAAGGTGCTAGAGGAGCAAAATGGAGAGGAAGAGGCCGAGG
ATGCCGGC
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Coding sequence (CDS) from alignment at H-elongata_contig78265:3..260+

>mRNA_H-elongata_contig78265.15496.1 ID=mRNA_H-elongata_contig78265.15496.1|Name=mRNA_H-elongata_contig78265.15496.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=516bp|location=Sequence derived from alignment at H-elongata_contig78265:3..260+ (Himanthalia elongata Himel1 dioecious)
TACGTCCTCGGCTGCCTCGGCTTTATCCCTGGTACTGTGGCATACGTTTT
CATCGGCACCACGGCGTCGAACCTGCTGGGAGACGACGATGAGGAGGAAG
AAGACGACGGTGGAAGCTCTACCGTCCAGCTGATCGTGATTATCGTAGGC
GCGATTGCTACGGTAATCGCGGTGGTTCTAATCAGCATCTATTCGAAGCG
CGCGCTGAACAAGGTGCTAGAGGAGCAAAATGGAGAGGAAGAGGCCGAGG
ATGCCGGCTACGTCCTCGGCTGCCTCGGCTTTATCCCTGGTACTGTGGCA
TACGTTTTCATCGGCACCACGGCGTCGAACCTGCTGGGAGACGACGATGA
GGAGGAAGAAGACGACGGTGGAAGCTCTACCGTCCAGCTGATCGTGATTA
TCGTAGGCGCGATTGCTACGGTAATCGCGGTGGTTCTAATCAGCATCTAT
TCGAAGCGCGCGCTGAACAAGGTGCTAGAGGAGCAAAATGGAGAGGAAGA
GGCCGAGGATGCCGGC
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