mRNA_H-elongata_contig7813.15483.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig7813.15483.1
Unique NamemRNA_H-elongata_contig7813.15483.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig7813.15483.1 vs. uniprot
Match: A0A6H5K1H2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1H2_9PHAE)

HSP 1 Score: 372 bits (954), Expect = 5.060e-111
Identity = 244/499 (48.90%), Postives = 286/499 (57.31%), Query Frame = 1 
Query:    1 GTKDGLPARGAGLPRTEACPVGCNGAAAVEVERKRLNLWTDMEKCIFLDKFIQHPKNFMRIAAFLPRKSPEDAVQFYYDSKTSIDYKVLLKEAVNRSKGYLGQWDTTLKAIRSVGASVSFDEYGQPRFEVPEGDDTFLTADMHPPSRSRPMSDLRREVLSLVLRGEIAGDAADAAKKCVAKVLQLRRNAAVGADDEEPPSDGAFESLLLSDDQLAYACAPLPPMAINIAAYRLCMRERSLAEASADGGYDNGGS-AAQDVVAATGADADGV--VNNETIIPFRFASTRINGVPQDLTAPSGNSSSGKNGIG--SGISINVGNKYSAANGGG----RDGXXXXXXXXAM--PGCSSSFRGGAAERAGLDPEADGASPEENDISGLQGADTGVIANAGEGAGDVGGIGAALXXXXXXXXXXXXGPEEGGTVXXXXXXGKDGAGPLRAPSAKWSKWTGEEREHFFAIHDARPESRDWAMYSDRVGSKTPTQVKTFYSNAKAK 1464
            GT D LPAR  GLP   ACP GCN  AAVE ERK LNLWTD+EKCIFLDKF+ HPKNFMRIA+FLPRKSPED VQFYYDSKTSIDYK LLKEAVNR+KGY GQW+ T KAIRSVGA VS DE GQP F VP+ DD+F TADMHPPSR+RP+ D++RE LSL   GEI G AA AAK  V++ L  R  AA G   +   S       LLS  ++  A A LPP AIN+AAYRLCMR         DG  D G   AA DV AA G    G    N   I+P+RF+  R+ GVP +L  P   S++     G  +G  ++   +    +GGG     DG      XX M  PG  S                            L GA  G+    G   G+ GG G A         XXXX              G       R PS K +KWT EERE FF+IHDARP +++W  Y++ + +KTPTQVKTFY+N+K K
Sbjct: 2063 GTTDALPARCRGLPADAACPAGCNCPAAVEAERKLLNLWTDVEKCIFLDKFLHHPKNFMRIASFLPRKSPEDVVQFYYDSKTSIDYKTLLKEAVNRNKGYAGQWNATFKAIRSVGAKVSIDEDGQPFFPVPQRDDSFATADMHPPSRTRPLLDIQREALSLACSGEIVGAAAAAAKTQVSEALLRRAVAAAGIPQQHQESLATEGLDLLSPAEVQAAAARLPPPAINVAAYRLCMRSFP-PPGDCDGDGDGGIIYAALDVAAAAGGAGSGAGRFNEGAIMPYRFSDARVTGVPDELAPPRSASAAXXXAAGDVTGDDVDAPYEPDRLSGGGVRALHDGGRGGRGXXRMGGPGSQSXXXXXXXXXXXXXXXXXXXXXXXEFGDALGGAGRGLGRRGGMSPGEEGGGGRAGKGKRGLSRXXXXXXXXXXXXAGGSTPGSAAGAQQRPPSTKGAKWTVEEREAFFSIHDARPGNKEWERYAELIHTKTPTQVKTFYTNSKNK 2560
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BLAST of mRNA_H-elongata_contig7813.15483.1 vs. uniprot
Match: D8LGU8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGU8_ECTSI)

HSP 1 Score: 349 bits (896), Expect = 2.620e-103
Identity = 249/510 (48.82%), Postives = 294/510 (57.65%), Query Frame = 1 
Query:    1 GTKDGLPARGAGLPRTEACPVGCNGAAAVEVERKRLNLWTDMEKCIFLDKFIQHPKNFMRIAAFLPRKSPEDAVQFYYDSKTSIDYKVLLKEAVNRSKGYLGQWDTTLKAIRSVGASVSFDEYGQPRFEVPEGDDTFLTADMHPPSRSRPMSDLRREVLSLVLRGEIAGDAADAAKKCVAKVLQLRRNAAVGADDEEPPSDGAFESLLLSDDQLAYACAPLPPMAINIAAYRLCMRERSLAEASADGGYDNGGS-AAQDVVAATGADADGV--VNNETIIPFRFASTRINGVPQDLTAPSGNSSSGKNGIGSGISINVGNKYSA-------ANGGG----RDGXXXXXXXXAMPGCSSSFRGGAAERAGLDPEADGASPEENDISGLQGADTGVIANAGEGAGDVGGIGAALXXXXXXXXXXXXG-PEEGGTVXXXXXXGKDGAGPLRA-------PSAKWSKWTGEEREHFFAIHDARPESRDWAMYSDRVGSKTPTQVKTFYSNAKAK 1464
            GT DGLPAR  GLP   ACP GCN  AAVE ERK  NLWTD+EKCIFLDKF+ HPKNFMRIA+FLPRKSPED VQFYYDSKTSIDYK LLKEAVNR+KGY GQW+ T KAIRSVGA VS DE GQP F VP+ DD+F TADMHPPSR+RP+ D++RE LSL    EI G  A AAK  V++ L+ R  AA G   +   S       LLS  ++  A A LPP AIN+AAYRLCMR     + + DG  D G   AA+DV  A G    G    +   I+P+RF+  R+ GVP +L  P   S               G+   A         GGG     DG  XXXXXX                       + A+  ++D  G        +  AG G G  GG+    XXXXXXXX    G P      XXXXXX                 PS K +KWT EERE FF+IHDARP +++W  Y++ + +KTPTQVKTFY+N+K K
Sbjct: 1847 GTTDGLPARCRGLPADAACPAGCNCPAAVEAERKLSNLWTDVEKCIFLDKFLHHPKNFMRIASFLPRKSPEDVVQFYYDSKTSIDYKTLLKEAVNRNKGYAGQWNATFKAIRSVGAKVSIDEDGQPFFPVPQRDDSFATADMHPPSRTRPLLDIQREALSLACSEEIVGATAAAAKTQVSETLRRRTAAAAGIPQQHHESPTTESLDLLSPAEVQAAAARLPPAAINVAAYRLCMRSFPPPD-NGDGDGDRGVIYAARDVATAAGGAGSGAGRFDEGAIMPYRFSDARVTGVPDELAPPRSASXXXXXXXXXXXXXVAGDDVDAPYEPDRFGGGGGVRALHDGGRXXXXXXXXXXXXXXXXXXXXXXXXXXXVGEEANDNDDDEYGD------ALGGAGRGLGRRGGMSPGXXXXXXXXXKGKRGLPRRKSAXXXXXXXXXXXXXXXXXXXXXXXPPSTKGAKWTVEEREAFFSIHDARPGNKEWERYAELIHTKTPTQVKTFYTNSKNK 2349
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BLAST of mRNA_H-elongata_contig7813.15483.1 vs. uniprot
Match: A0A7S2RFX8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RFX8_9STRA)

HSP 1 Score: 115 bits (288), Expect = 2.890e-26
Identity = 59/121 (48.76%), Postives = 79/121 (65.29%), Query Frame = 1 
Query:   94 ERKRLN--LWTDMEKCIFLDKFIQHPKNFMRIAAFLPRKSPEDAVQFYYDSKTSIDYKVLLKEAVNRSKGYLGQWDTTLKAIRSVGASVSFDEYGQP-RFEVPEGDDTFLTADMHPPSRSR 447
            ERKR+N   W+D+EKCIFLDKF+Q+PKNF +IA+FL +K  +D V+FYYDSK  +DYK LL+E   R +G    W  T KA+   GA ++F E  Q   FE+P    T+ T + HP  + R
Sbjct:   50 ERKRMNDRPWSDLEKCIFLDKFLQYPKNFGKIASFLRQKDAKDCVKFYYDSKKDVDYKALLREYQQRRRGLRLLWTETAKAVERFGAKLTFHEETQEVDFELPASHRTYKTFNRHPKRKRR 170
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BLAST of mRNA_H-elongata_contig7813.15483.1 vs. uniprot
Match: A0A4D9CZ43_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CZ43_9STRA)

HSP 1 Score: 119 bits (299), Expect = 6.800e-25
Identity = 69/150 (46.00%), Postives = 84/150 (56.00%), Query Frame = 1 
Query:    4 TKDGLPARGAGLPRTEACPVGCNGAAAVEVERKRLNLWTDMEKCIFLDKFIQHPKNFMRIAAFLPRKSPEDAVQFYYDSKTSIDYKVLLKEAVNRSKGYLGQWDTTLKAIRSVGASVSF----DEYGQPRFEVPEGDDTFLTADMHPPSR 441
            T DG P R A    TE C   CN   AVE   + +N W+DMEKCIFLDKF+Q+PKNF +IA+FL RKS  D ++FYYDSK  I YK LLKE   R +G          A R VGA++      D +   R   P  D  + T + HP SR
Sbjct:  703 TSDGGPMRCASRTLTEKCTADCNCPRAVERRSRYVNPWSDMEKCIFLDKFLQYPKNFRKIASFLRRKSTHDVIEFYYDSKQCIHYKALLKENEARRRGADQNLVWLKHAARQVGATIDLRCDNDGHEVLRLYPPGNDYLYTTFNKHPGSR 852
[Close]
BLAST of mRNA_H-elongata_contig7813.15483.1 vs. uniprot
Match: W7U1T9_9STRA (Nuclear receptor corepressor 1-like protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U1T9_9STRA)

HSP 1 Score: 119 bits (299), Expect = 7.440e-25
Identity = 69/150 (46.00%), Postives = 84/150 (56.00%), Query Frame = 1 
Query:    4 TKDGLPARGAGLPRTEACPVGCNGAAAVEVERKRLNLWTDMEKCIFLDKFIQHPKNFMRIAAFLPRKSPEDAVQFYYDSKTSIDYKVLLKEAVNRSKGYLGQWDTTLKAIRSVGASVSF----DEYGQPRFEVPEGDDTFLTADMHPPSR 441
            T DG P R A    TE C   CN   AVE   + +N W+DMEKCIFLDKF+Q+PKNF +IA+FL RKS  D ++FYYDSK  I YK LLKE   R +G          A R VGA++      D +   R   P  D  + T + HP SR
Sbjct: 1006 TSDGGPMRCASRTLTEKCTADCNCPRAVERRSRYVNPWSDMEKCIFLDKFLQYPKNFRKIASFLRRKSTHDVIEFYYDSKQCIHYKALLKENEARRRGADQNLVWLKHAARQVGATIDLRCDNDGHEVLRLYPPGNDYLYTTFNKHPGSR 1155
[Close]
BLAST of mRNA_H-elongata_contig7813.15483.1 vs. uniprot
Match: K0SA93_THAOC (SANT domain-containing protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SA93_THAOC)

HSP 1 Score: 115 bits (287), Expect = 4.610e-24
Identity = 64/141 (45.39%), Postives = 88/141 (62.41%), Query Frame = 1 
Query:   34 GLPRTEACPVGCNG----AAAVEVERKRLNLWTDMEKCIFLDKFIQHPKNFMRIAAFLPRKSPEDAVQFYYDSKTSIDYKVLLKEAVNRSK--GYLGQWDTTLKAIRSVGASVSFDEYGQP--RFEVPEGDDTFLTADMHP 432
            G  R+ A   G +G    A A E ERK +N+W+DMEKCIFLD+F+ HPK+F +I++FL  KS +D V+FYYDSK ++ YK  LKE + R K  G +  WD T++A  +VGA V+     +   R  +P GD T+ T   HP
Sbjct:  228 GGARSRARSGGSSGLVDDAQAEEDERKHVNVWSDMEKCIFLDRFLHHPKDFRKISSFLVNKSTKDCVRFYYDSKKTVPYKHALKEFLQRKKRRGDVVSWDATVQAALAVGAVVTEGTGPEDPVRISLPPGDYTYRTRSFHP 368
[Close]
BLAST of mRNA_H-elongata_contig7813.15483.1 vs. uniprot
Match: A0A6U3TBG9_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3TBG9_9STRA)

HSP 1 Score: 115 bits (288), Expect = 1.910e-23
Identity = 59/122 (48.36%), Postives = 83/122 (68.03%), Query Frame = 1 
Query:   88 EVERKRLNLWTDMEKCIFLDKFIQHPKNFMRIAAFLPRKSPEDAVQFYYDSKTSIDYKVLLKEAVNRSK--GYLGQWDTTLKAIRSVGASVSFDEYGQPR--FEVPEGDDTFLTADMHPPSR 441
            E ER+ ++ W+DMEKCIFLD+F+QHPK+F +IA+FL  K+ +D V FYYDSK SI YK  LKE + R K  G +  W+ T++A  SVGA ++     +    F++P+GD+TF T + HP  R
Sbjct: 1086 EEERRNVSAWSDMEKCIFLDRFLQHPKDFRKIASFLRNKTTKDCVSFYYDSKQSIPYKAALKEHLQRKKRRGDVS-WEATIQAALSVGAVITAGTSPEKPLVFKLPQGDNTFYTRNFHPMKR 1206
[Close]
BLAST of mRNA_H-elongata_contig7813.15483.1 vs. uniprot
Match: A0A7S3M6N9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M6N9_9STRA)

HSP 1 Score: 115 bits (287), Expect = 2.670e-23
Identity = 53/117 (45.30%), Postives = 77/117 (65.81%), Query Frame = 1 
Query:    4 TKDGLPARGAGLPRTEACPVGCNGAAAVEVERKRLNLWTDMEKCIFLDKFIQHPKNFMRIAAFLPRKSPEDAVQFYYDSKTSIDYKVLLKEAVNRSKGYLGQWDTTLKAIRSVGASV 354
            T DG     + +P  +ACP+ CN A  V+  +K   +W+D EKCIF+DKF+Q PKNF RI+ FL  +S +D ++FYYD+K +I++K LLKE  +R K +   W+ T KA   VGA++
Sbjct: 1242 TTDGKKQACSMIPLAKACPINCNCALQVDKLQKLERIWSDTEKCIFIDKFLQFPKNFHRISTFLTNRSTKDCIKFYYDAKGTIEFKFLLKEFDSRRKTFKSTWNYTTKAAHMVGATI 1358
[Close]
BLAST of mRNA_H-elongata_contig7813.15483.1 vs. uniprot
Match: A0A7S2PKC0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PKC0_9STRA)

HSP 1 Score: 109 bits (272), Expect = 3.800e-23
Identity = 54/119 (45.38%), Postives = 78/119 (65.55%), Query Frame = 1 
Query:  106 LNLWTDMEKCIFLDKFIQHPKNFMRIAAFLPRKSPEDAVQFYYDSKTSIDYKVLLKEAVNRSKGYLGQWDTTLKAIRSVGASV-------SFDEYGQPRFEVPEGDDTFLTADMHPPSR 441
            +N W+D+EKCIFLD+F Q+PKNF +IA+FL  KS  D V++YYDSK SI YK  LKE   R K    +W+ T++A++SVGA V       S +  G P F +P  ++++ T  +HP ++
Sbjct:    1 VNPWSDVEKCIFLDRFFQYPKNFKKIASFLRNKSTSDCVRYYYDSKQSIPYKKALKEHWLRRKKRADEWEHTMEAVQSVGAQVVSSSSGDSSESGGPPEFILPTDENSYHTRHLHPKTK 119
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BLAST of mRNA_H-elongata_contig7813.15483.1 vs. uniprot
Match: A0A1Z5JC82_FISSO (Nuclear receptor co-repressor 1 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JC82_FISSO)

HSP 1 Score: 112 bits (279), Expect = 2.530e-22
Identity = 59/122 (48.36%), Postives = 80/122 (65.57%), Query Frame = 1 
Query:   91 VERKRL----NLWTDMEKCIFLDKFIQHPKNFMRIAAFLPRKSPEDAVQFYYDSKTSIDYKVLLKEAVNRSK--GYLGQWDTTLKAIRSVGASVSF--DEYGQPRFEVPEGDDTFLTADMHP 432
            VE+++L    N+WTD EKCIFLD+F+QHPK+F +IA+FL  K+  D ++FYYDSK ++ YK  LKE + R K  G    W+ T++A  SVGA V    DE     F +PE D T+ T D+HP
Sbjct: 1032 VEQEKLCAMENMWTDTEKCIFLDRFLQHPKDFRKIASFLRNKTTRDCIKFYYDSKQTVSYKGALKEHIMRRKRRGEYHVWEATIQAALSVGAVVKAGTDEENPLVFTLPENDCTYNTRDLHP 1153
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7813.15483.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K1H2_9PHAE5.060e-11148.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LGU8_ECTSI2.620e-10348.82Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2RFX8_9STRA2.890e-2648.76Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A4D9CZ43_9STRA6.800e-2546.00Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
W7U1T9_9STRA7.440e-2546.00Nuclear receptor corepressor 1-like protein n=1 Ta... [more]
K0SA93_THAOC4.610e-2445.39SANT domain-containing protein (Fragment) n=1 Tax=... [more]
A0A6U3TBG9_9STRA1.910e-2348.36Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A7S3M6N9_9STRA2.670e-2345.30Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A7S2PKC0_9STRA3.800e-2345.38Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
A0A1Z5JC82_FISSO2.530e-2248.36Nuclear receptor co-repressor 1 n=2 Tax=Fistulifer... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig7813contigH-elongata_contig7813:2908..10230 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score356.7
Seed ortholog evalue1.7e-95
Seed eggNOG ortholog2880.D8LGU8
KEGG koko:K04650
KEGG Pathwayko01522,ko04919,ko05202,map01522,map04919,map05202
EggNOG free text desc.regulation of glycolytic process by negative regulation of transcription from RNA polymerase II promoter
EggNOG OGsKOG1878@1,KOG1878@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01009
Hectar predicted targeting categoryother localisation
Exons4
Model size1468
Cds size1467
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig7813.15483.1prot_H-elongata_contig7813.15483.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig7813 2908..10230 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931186.084005-CDS-H-elongata_contig7813:2907..29911622931186.084005-CDS-H-elongata_contig7813:2907..2991Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7813 2908..2991 -
1691679733.3097694-CDS-H-elongata_contig7813:2907..29911691679733.3097694-CDS-H-elongata_contig7813:2907..2991Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7813 2908..2991 -
1622931186.1030085-CDS-H-elongata_contig7813:5910..60571622931186.1030085-CDS-H-elongata_contig7813:5910..6057Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7813 5911..6057 -
1691679733.321461-CDS-H-elongata_contig7813:5910..60571691679733.321461-CDS-H-elongata_contig7813:5910..6057Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7813 5911..6057 -
1622931186.1189797-CDS-H-elongata_contig7813:8045..89871622931186.1189797-CDS-H-elongata_contig7813:8045..8987Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7813 8046..8987 -
1691679733.3367226-CDS-H-elongata_contig7813:8045..89871691679733.3367226-CDS-H-elongata_contig7813:8045..8987Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7813 8046..8987 -
1622931186.1305897-CDS-H-elongata_contig7813:9936..102301622931186.1305897-CDS-H-elongata_contig7813:9936..10230Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7813 9937..10230 -
1691679733.3521435-CDS-H-elongata_contig7813:9936..102301691679733.3521435-CDS-H-elongata_contig7813:9936..10230Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7813 9937..10230 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig7813.15483.1

>prot_H-elongata_contig7813.15483.1 ID=prot_H-elongata_contig7813.15483.1|Name=mRNA_H-elongata_contig7813.15483.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=489bp
GTKDGLPARGAGLPRTEACPVGCNGAAAVEVERKRLNLWTDMEKCIFLDK
FIQHPKNFMRIAAFLPRKSPEDAVQFYYDSKTSIDYKVLLKEAVNRSKGY
LGQWDTTLKAIRSVGASVSFDEYGQPRFEVPEGDDTFLTADMHPPSRSRP
MSDLRREVLSLVLRGEIAGDAADAAKKCVAKVLQLRRNAAVGADDEEPPS
DGAFESLLLSDDQLAYACAPLPPMAINIAAYRLCMRERSLAEASADGGYD
NGGSAAQDVVAATGADADGVVNNETIIPFRFASTRINGVPQDLTAPSGNS
SSGKNGIGSGISINVGNKYSAANGGGRDGGGGEDGGGAMPGCSSSFRGGA
AERAGLDPEADGASPEENDISGLQGADTGVIANAGEGAGDVGGIGAALAA
VEAAIPAAATGPEEGGTVKGGTAGGKDGAGPLRAPSAKWSKWTGEEREHF
FAIHDARPESRDWAMYSDRVGSKTPTQVKTFYSNAKAK*
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mRNA from alignment at H-elongata_contig7813:2908..10230-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig7813.15483.1 ID=mRNA_H-elongata_contig7813.15483.1|Name=mRNA_H-elongata_contig7813.15483.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=7323bp|location=Sequence derived from alignment at H-elongata_contig7813:2908..10230- (Himanthalia elongata Himel1 dioecious)
GGTACTAAGGATGGCCTGCCTGCCCGCGGCGCGGGTTTGCCCCGGACCGA
GGCATGTCCTGTCGGGTGCAACGGCGCCGCGGCGGTGGAGGTCGAGCGGA
AGCGGCTGAACCTGTGGACGGACATGGAGAAGTGCATCTTCTTGGATAAG
TTTATACAGCACCCGAAAAACTTTATGCGGATCGCCGCGTTTTTGCCGCG
GAAGTCTCCGGAGGACGCGGTGCAGTTCTACTACGACAGCAAGACCTCGA
TAGACTACAAGGTGCTGCTGAAGGAGGCCGTCAACCGGAGCAAGGTGTGT
GTGTGTGTGCACAAGCTGGACCGACCAAGAAACACTTAAAATTATCTGCT
TATTATATTTTTAAACGGTAACGAATCAGGGCAAGCTGGCCATATCGTCG
TGATCGGGTAGTAGTCAAGGCGCTCATGCAAATCTCTTCAGCGTAGAATT
CCGCCAGGTTAGTATCTTGAAAGCCGCGTTTCAGTTTTTACGATTTTTTC
GAAGCTAGTTTTTGTGTGGCGCAATCTGAATTTTAGGATTTTTTTCACCC
AGAATTAAAGCCCACCAATTTCGCTCAAATTTGGTGTGCGTGTAAGTAAA
AATGCGAGAAAAAGAACTATTGATGTCCTATCCCATATGTTATTGCCGTT
CGCTAGTTATGGCCGAATTCCTTTATTATATACCGGTATAAGTTTTGAAA
TTATAGCGACCTTGGTACAAATATCTCGATGCGCGGCCAAGTGTTTTCAT
TTTTTTACTAAAATTTTGACCCGTGTTGAAAGACTACTCACCAAGACACT
CAAATAACGACCCCGTCGATGTTTTGCTTTTTCGCCGAGCTACGGCCGAC
TGAAAATCCATGGGCATGGTGGGGGCGCTTAATTTGGGAATAACTCAGTA
AACCCCCTCCAAAAAAACTCGATGGGTGAGCGTCTTGGCAAAAAAACTCG
ATGGGTGAGCGTCTTGGCAGTTGTGCTCCAAATCGCGTATCACAATTCCA
GGACAAAATTCGATAAATTTAGCCGCGCATCCCGAAATTACGGTATTATG
TGGTTTTCTTGGTCGGCCCAGCTTGCATGTATGTTTTTGTGTGCTTCTGT
TTATTTATGCCATATACACCCGAAGTTACCGTTGGCGGTACCACCTCGTT
GCCGACGTACGTGGCATTTGGTAATTTGAAGGGAATCTACCCTAGGGTGT
ACCACAATCCCCTCGTCTCACCGACCCCTGTATTCACACGCAGGGTTACC
TCGGTCAGTGGGATACCACGCTCAAGGCGATCCGCAGTGTCGGCGCCAGT
GTTTCCTTCGATGAGTACGGACAGCCGCGGTTCGAGGTTCCCGAGGGGGA
TGACACTTTCCTAACCGCGGATATGCACCCGCCGTCCAGGAGCCGTCCGA
TGTCCGATCTCCGTCGAGAGGTGCTGTCGCTAGTGCTAAGGGGAGAGATC
GCCGGCGACGCGGCCGATGCGGCGAAGAAATGCGTCGCGAAGGTTTTGCA
ACTCCGTAGAAACGCCGCCGTCGGGGCCGACGATGAGGAACCGCCCAGCG
ATGGCGCGTTTGAGAGCCTGCTACTAAGCGACGATCAGCTGGCCTACGCG
TGCGCGCCCCTTCCGCCGATGGCGATCAACATCGCCGCGTACCGCCTCTG
TATGAGGGAGCGCTCCCTCGCCGAGGCTTCCGCGGACGGGGGCTACGATA
ACGGTGGCAGCGCGGCCCAGGACGTGGTCGCGGCGACTGGGGCGGACGCG
GACGGGGTGGTGAACAACGAAACGATCATCCCATTTAGGTTCGCGTCAAC
GAGGATAAACGGGGTACCGCAAGACCTGACGGCGCCCTCCGGTAACAGCA
GCAGCGGTAAAAACGGTATCGGCAGCGGCATCAGCATCAACGTCGGGAAC
AAGTACTCTGCTGCAAACGGCGGAGGTAGAGATGGAGGTGGTGGGGAGGA
TGGTGGTGGTGCCATGCCGGGGTGTTCCTCTTCATTCCGCGGTGGCGCTG
CCGAACGCGCAGGCCTCGACCCGGAGGCTGATGGAGCATCGCCCGAGGAA
AATGATATTTCGGGCCTTCAAGGAGCTGACACGGGGGTTATCGCAAATGC
AGGGGAGGGTGCAGGAGATGTCGGCGGTATTGGCGCGGCACTAGCAGCGG
TGGAAGCGGCGATACCAGCAGCCGCGACAGGGCCGGTGGAAACTGCAGCA
GAGTCAGCTACTGGAGCCGGAGCAACAGCGGTGGCAGCAGGGACAGGGGC
AGGAGGAAAAGGTAGAGGGAGGAGGATAGGACACGGCGTGGTGACAACTT
CTTCTCCGCATCTTGGTGCCGCTGCCACCACCGGGCACGGGAGGCGGAAG
ATCGCTGCTCAGGTAGGCGGCGTTCTCATGTTTTGCAAGCCTTTCAGCTG
TTAAAACAGTTGACCACGCCTCCTCGGGAGGACGGAGAAAAGCGACAGGT
TGTGTCACCCCCCTCGACGGAGTGAGCAGGCCTGGTTTTGCTGTACCGTA
GACGTATGATGGCCCTAACCCTAGGGTATAAACAGTATAAACACACCTCG
GGGTCGAATGGAACGCCCCCCCCCCCCCCTCACCCCCCCCGGCTGTTTCC
TTAGGGGTGGTGGTGCTTAACACCCTTTTGCCGCGCCTGGGGGGGGGGGG
TGGCTNNNNNNNNNNAGACGAAGTAGGGCCCTAACCCCGGGGTATAAAGC
AGAAAAACACACCGCGGGGTGGAATGGAACGCCCCCCCCCCCCCTCTCGC
CCCCGGGTTGTTTCTTGAGGCGTGGTGCTGTTAAACAGCTTTTTGCAGGG
CATGGGGGGAGTTCGTGCATTGCGTCCTGCAAGCCCAGAGACGTCGACCG
AAGAGTTTTTCTTGTCTCTTGCCAAACGGGGTGAAACACACATCACATTC
TCTATAGAATGCCTGCTGAATAATAGATTGTTAGGAAGCCCTAGAGCAAC
TGTCAACTTAGGAAGAGTACTCCGCCAAGAGTATCCATGAGCATATTTGG
AATACCGGTGGTGTTTGTGGTGTGCGTGTGCGTGTGAAGGCGCCTTTGCG
CTTTCAAGTGGAGATGAAACTCCCTTTGCGGTACTTAGAATATAGCCGGT
AACGCCCACTAAGAAAGTGCAACATTAGATGACTCGGTATTTCCAATAAT
AAACCCATGGTATATATGTCATGTCCGGTTTAGCGTAGCAAAACCAAGGG
TGACGATGACATGACTAAACGATGACATGACTAAACGCTGGTACCGTGCC
ATCTTTGTGTGAAACGCAGTCTGGCCGTCGAAAACCCGTGTTATCGTATC
GCTCCGGCCCGGTATCATATATTGGGATGCGTGGTCTACGTCCGTTAGGA
TAGAATATGCCTTTAACAGTAGGAACTCCCCCCCCCCCCCCTCACCGGTG
AAAACCCGGCATCATGGTATCATATCGCTCCGTCCTCGCATTGTTGGGAT
ACAACTACAATGTACCCACAAACATGCCTCTGTAGAACACTGGTTATCAT
GGTATCATATCGCTCCGTCTCCGCATTGTTGGGATGCGTGGTCTATCTCT
CCCAGTTAGACAACGAAATGGTGTTGAATAGAAGTACCCCTCTTGTATTC
TAGAGAACACTGACAGCACCTCCGACGCCGCAAGCTGCCCTAGGTTCTAT
TTTTTGGGAGATTTCTTTCAGATTCGCCTCGGTTATTGTCACAGCTGCCT
TATCTCTGAGTGGTTACGGAGAAATCCCTTTATCCCTGGTATTGTGAGAC
TATATGGCAGGAAAACCTTTCAATGACGGGACTACGCGAGAAGTTCGTTG
GTGCGCCTTCCCACTCACGACCCGGTAACCCTCTCCCCCCAGGCTGTAAC
GAGGTTAATCACCCGCCACGCCTCGCTGTATCGATTTTTAATTGTGGTCG
TGTCAAACTACCGCCGTCGCCGCCCCAAAGTAAAACCTTCTCGATTCATA
GTAAAACCTTCTCAAGAAGGTGATGTCCCCATGCCAAGGGGGGGGGGAGT
TCCCTCCCCCCGCCGCCTTATGTTTGAAAAATTACGCACGGGTTTACACA
AACACCTTTTGGAAAAGAGGGAAAGGGAGATTTCAGCGAGATCTCTTTAA
TAATAATGTCGCCCGTGTTTTATTTTGATAATTAATTGAGTTGCTAAACG
CTACCGGCGACGGGTTTCAACAGGAAGAAGGCGGGACCGTGAAAGGGGGG
ACTGCAGGGGGAAAGGATGGAGCTGGGCCCTTGAGAGCCCCGTCGGCGAA
GTGGTCGAAATGGACCGGGGAAGAGCGGGAGCATTTCTTCGCCATTCATG
ACGCCCGTCCGGAGAGCAGGGTGCGTCATCTATTAATAGCCTAATTTTTC
ACCCTTTTGGGTTAGGTACCCGATATGTTTCTCTATACAAGATCCGAGTG
AGAGCCCTTGAAGAGAGTTAGTAATTGCGTAGGAGGGGAGGCGTGGAGTT
AGTTCTTCGCCTCTTAATAGTATCCGTCGATGATTGAACCGAATCTATCC
ATCCATGCCAAACTAACTCACCGCACCCGGCGCGATGGCTATCCCCCCCC
CCCCTGTCTTATGTTTTTTTAGAAAAAGTATAATAATAATAATAATAATA
ATATTGATAACAATAGCGATGTACGCACTCAAACCTGACGATGGTTGGTC
CCATGGAGTTGATGGTTGGTTCCCTGGACTTCACACAATATTTGGTGTAA
AGAATGTGTGTATGTTCGAAGGGTTTGAATTATTTCATACTACTATGTTT
TAAAATAATAATAATAATAATAATAACGAGGGCGCACAGAAAACGTTTTT
TTTCCGCATACCTAGCCCCCCGCCCCCCCGGAGGACCGAATTTCAACAAG
AAATATACTATATTTTTCCCGTATTTTGTTATGCTTTACTACTACATCAT
AGTGAACATCAAACCTGTTTGACCTGGCGTACGGATAAAACAGTGGCGCT
AAAATATGCCTTCTTGTAGTGCTTGCTATTGCCTTTCAAAAGAACACTGG
TTGGTGAAATCATACGATCATCATCACACCCTCGAATCAATCTTTGTAAT
GAAACAAAAGGCCCGGAGTAGCATCACGCCTCTGCGGGCGTGAAAGAAGA
ACCCCAATGCCCGATGCCCGATGCAAACCGCGGAATAGTAGGAACTCGCT
ATTAACTATTGACTATTAAATAGGTAGCCTTTTGCACGCGGTGGGTGCTT
GTTATTTGTTGAGTGTTCCGTTCCGCCTGTACTCCGACAAAAATACCACA
CTTCAAAATCAACGGCTGCTGTTGTACCCCTACTCCAAGTTCTTAAGTTG
CCTCTTCCGGGTACGGGTACGTACCCTCGACCTTACGTCCGGCTCCTCCT
CCTCCCCGACCCCCTCCCCGACCCCCTCCTCTTCTTCCGAGTCCACAGCA
TGAAGAGAAATGCGCCCTGCATTTATCCCGGCCTCGCACGACACCCCCTG
GCTGCCGACGCCATGCAGAGTCGACGGGTAGTGCCGGTAGAGTACAGGCT
CCCGGACCTCCGGAGCTAGCCCCCCACGTAATACTTGCGGGTTTGGGCAT
GCGTCTCAGGCGGTATGTCGGTGGGTGCATTCTCGTGTGTCTACATCAGA
GGCCCGCCTACACTGCCCTCAGGTCCGACCGTAGCTCCCTCGGCAAGCAA
CCCAATCTCACTGCCCGCGCCCCCACCACCCTCAGGCCCGCCTGAAGGGT
GTAGCACCTCAACCTCACAGTCCCGCGCCCTTATCACTACTAGCCTCCAT
CGCCACCGGCGACTCCCTCGCGACCTTTGTGATGCTTGAATTTGGCAACC
ATTGGGAAAAGGACGTCATTTTTTTACTGCCCTTCGCCGCTTCCTCGATG
CTAGCCTGCCGATGCAAACAACACGCCAATATTTCATACCTGGCATGTCA
ATATTTCGACCACGTATGATATAAGTATAGTATTGTACCACTTATAATAA
CTACGGCGGGGTTCGAGTCTTGTGTCGGCGAGCATTTTTTTTGTTTTTTT
TGCACGGAAACCCGACACCTGTACTCACTTGTGTTCTTTTTGAATCCTTG
CGCGCCTTGCACGTGCATTCGACCCCACATGTCTATATCGGATCCGAGAT
CCTTCCCGCACGTGCAAGTCCATTTGCCACTCCTCCCTTTCGTGCCGATG
CTTGATATAGGTAGCGTTGCTTCATAGCTGATCATGCCATAGGGTCATTG
GAGGGAACAGGGGGGACAGGGGTGGGGGGACAGGGGTGCGACCAGCGGCA
GCACAGCTCAGCCTCTTGCATGCAACTTCCAGCTGTGGTGTGGACGTCGA
CCAATTGCATCAGTCAAGCGGAATGTTCGCGCATTGTTTTCGCGCAAAAT
ACCTGCTGTTGCTGCTGCTGCCGGTGGCTACGCCAATACAACCCTCGGGT
CGAGCTTAAACTTTGGCAGCGCCCATCAACCCCTTCTCGCCATAATTACT
GCATACCACTACATAGGAGACTCGCAAGAACTACTGCCACTGGTACAGTG
CCGCTGTGTGTGTGTGTGTGTGTGTCTATTTATTAAATTGTACATAACCG
CGCAATCCGACCCTGTCGTCCTAGTCATTCTATGCCACTCGTATTGATCC
TCCTAGGGGGGATCAATGATACTTATTCCGAAAACCTAGTGTGTGTGTGT
GTGTGTGTGTTCATATTTGCTTCTGAGGCAATTTCTCACAAGCCATGGAA
TACGAGGCAGCGTTAACCCTTAACAATACACCTAACTCTTACACTTGTCA
CTCTTTGTGCCGTTGCGAGAGCTCATGCTGTTCAGACGTCGCCGCGTCTA
CTTCTGAATCGTCGCCGAAGCCTTTTGCCCACAGGAACAAATCCATTCCG
CGCCACCTTCGCGGTTGCTTCTCTTTTTACACAGTCGCTACAGCCAATCC
TCCAACCCCCAAAAGCCCGACAACCGCGCGTAGATATTTGTCACCGGAAT
ATGACACTTATCTCTCTCTCTCTTTTCTGATATTTTCCCTCTTTTTTTCC
CCTCTCTCGCTTCTGTTTATATCTTTTTCCTTTGTACAAAATATTATTTA
CGTTTGAGACTTATTTTTCCTTCCTTTTTTTTTTCTAAAAACATACCTGG
TATAAATTCATTCAAACCCTCCGAGCATCCACGCCTTATTTCTTTTTTTA
AAAGCCTATGAACTCATTCAAACCCTTTGCTCATTTTGTTTTGCTTTGTA
TTGCTTTGTTTTGCTGTGCTGTCGCCCCATATATCAAAGGACTGGGCGAT
GTACTCCGACCGGGTGGGCAGCAAAACACCAACTCAGGTCAAGACCTTCT
ACTCCAACGCCAAGGCAAAGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig7813:2908..10230-

>mRNA_H-elongata_contig7813.15483.1 ID=mRNA_H-elongata_contig7813.15483.1|Name=mRNA_H-elongata_contig7813.15483.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2934bp|location=Sequence derived from alignment at H-elongata_contig7813:2908..10230- (Himanthalia elongata Himel1 dioecious)
GGTACTAAGGATGGCCTGCCTGCCCGCGGCGCGGGTTTGCCCCGGACCGA
GGCATGTCCTGTCGGGTGCAACGGCGCCGCGGCGGTGGAGGTCGAGCGGA
AGCGGCTGAACCTGTGGACGGACATGGAGAAGTGCATCTTCTTGGATAAG
TTTATACAGCACCCGAAAAACTTTATGCGGATCGCCGCGTTTTTGCCGCG
GAAGTCTCCGGAGGACGCGGTGCAGTTCTACTACGACAGCAAGACCTCGA
TAGACTACAAGGTGCTGCTGAAGGAGGCCGTCAACCGGAGCAAGGGTACT
AAGGATGGCCTGCCTGCCCGCGGCGCGGGTTTGCCCCGGACCGAGGCATG
TCCTGTCGGGTGCAACGGCGCCGCGGCGGTGGAGGTCGAGCGGAAGCGGC
TGAACCTGTGGACGGACATGGAGAAGTGCATCTTCTTGGATAAGTTTATA
CAGCACCCGAAAAACTTTATGCGGATCGCCGCGTTTTTGCCGCGGAAGTC
TCCGGAGGACGCGGTGCAGTTCTACTACGACAGCAAGACCTCGATAGACT
ACAAGGTGCTGCTGAAGGAGGCCGTCAACCGGAGCAAGGGTTACCTCGGT
CAGTGGGATACCACGCTCAAGGCGATCCGCAGTGTCGGCGCCAGTGTTTC
CTTCGATGAGTACGGACAGCCGCGGTTCGAGGTTCCCGAGGGGGATGACA
CTTTCCTAACCGCGGATATGCACCCGCCGTCCAGGAGCCGTCCGATGTCC
GATCTCCGTCGAGAGGTGCTGTCGCTAGTGCTAAGGGGAGAGATCGCCGG
CGACGCGGCCGATGCGGCGAAGAAATGCGTCGCGAAGGTTTTGCAACTCC
GTAGAAACGCCGCCGTCGGGGCCGACGATGAGGAACCGCCCAGCGATGGC
GCGTTTGAGAGCCTGCTACTAAGCGACGATCAGCTGGCCTACGCGTGCGC
GCCCCTTCCGCCGATGGCGATCAACATCGCCGCGTACCGCCTCTGTATGA
GGGAGCGCTCCCTCGCCGAGGCTTCCGCGGACGGGGGCTACGATAACGGT
GGCAGCGCGGCCCAGGACGTGGTCGCGGCGACTGGGGCGGACGCGGACGG
GGTGGTGAACAACGAAACGATCATCCCATTTAGGTTCGCGTCAACGAGGA
TAAACGGGGTACCGCAAGACCTGACGGCGCCCTCCGGTAACAGCAGCAGC
GGTAAAAACGGTATCGGCAGCGGCATCAGCATCAACGTCGGGAACAAGTA
CTCTGCTGCAAACGGCGGAGGTAGAGATGGAGGTGGTGGGGAGGATGGTG
GTGGTGCCATGCCGGGGTGTTCCTCTTCATTCCGCGGTGGCGCTGCCGAA
CGCGCAGGCCTCGACCCGGAGGCTGATGGAGCATCGCCCGAGGAAAATGA
TATTTCGGGCCTTCAAGGAGCTGACACGGGGGTTATCGCAAATGCAGGGG
AGGGTGCAGGAGATGTCGGCGGTATTGGCGCGGCACTAGCAGCGGTGGAA
GCGGCGATACCAGCAGCCGCGACAGGGCCGGGTTACCTCGGTCAGTGGGA
TACCACGCTCAAGGCGATCCGCAGTGTCGGCGCCAGTGTTTCCTTCGATG
AGTACGGACAGCCGCGGTTCGAGGTTCCCGAGGGGGATGACACTTTCCTA
ACCGCGGATATGCACCCGCCGTCCAGGAGCCGTCCGATGTCCGATCTCCG
TCGAGAGGTGCTGTCGCTAGTGCTAAGGGGAGAGATCGCCGGCGACGCGG
CCGATGCGGCGAAGAAATGCGTCGCGAAGGTTTTGCAACTCCGTAGAAAC
GCCGCCGTCGGGGCCGACGATGAGGAACCGCCCAGCGATGGCGCGTTTGA
GAGCCTGCTACTAAGCGACGATCAGCTGGCCTACGCGTGCGCGCCCCTTC
CGCCGATGGCGATCAACATCGCCGCGTACCGCCTCTGTATGAGGGAGCGC
TCCCTCGCCGAGGCTTCCGCGGACGGGGGCTACGATAACGGTGGCAGCGC
GGCCCAGGACGTGGTCGCGGCGACTGGGGCGGACGCGGACGGGGTGGTGA
ACAACGAAACGATCATCCCATTTAGGTTCGCGTCAACGAGGATAAACGGG
GTACCGCAAGACCTGACGGCGCCCTCCGGTAACAGCAGCAGCGGTAAAAA
CGGTATCGGCAGCGGCATCAGCATCAACGTCGGGAACAAGTACTCTGCTG
CAAACGGCGGAGGTAGAGATGGAGGTGGTGGGGAGGATGGTGGTGGTGCC
ATGCCGGGGTGTTCCTCTTCATTCCGCGGTGGCGCTGCCGAACGCGCAGG
CCTCGACCCGGAGGCTGATGGAGCATCGCCCGAGGAAAATGATATTTCGG
GCCTTCAAGGAGCTGACACGGGGGTTATCGCAAATGCAGGGGAGGGTGCA
GGAGATGTCGGCGGTATTGGCGCGGCACTAGCAGCGGTGGAAGCGGCGAT
ACCAGCAGCCGCGACAGGGCCGGAAGAAGGCGGGACCGTGAAAGGGGGGA
CTGCAGGGGGAAAGGATGGAGCTGGGCCCTTGAGAGCCCCGTCGGCGAAG
TGGTCGAAATGGACCGGGGAAGAGCGGGAGCATTTCTTCGCCATTCATGA
CGCCCGTCCGGAGAGCAGGGAAGAAGGCGGGACCGTGAAAGGGGGGACTG
CAGGGGGAAAGGATGGAGCTGGGCCCTTGAGAGCCCCGTCGGCGAAGTGG
TCGAAATGGACCGGGGAAGAGCGGGAGCATTTCTTCGCCATTCATGACGC
CCGTCCGGAGAGCAGGGACTGGGCGATGTACTCCGACCGGGTGGGCAGCA
AAACACCAACTCAGGTCAAGACCTTCTACTCCAACGCCAAGGCAAAGTGA
GACTGGGCGATGTACTCCGACCGGGTGGGCAGCAAAACACCAACTCAGGT
CAAGACCTTCTACTCCAACGCCAAGGCAAAGTGA
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