mRNA_H-elongata_contig78113.15481.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig78113.15481.1
Unique NamemRNA_H-elongata_contig78113.15481.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig78113.15481.1 vs. uniprot
Match: D8LP29_ECTSI (Glycosyltransferase, family GT49 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP29_ECTSI)

HSP 1 Score: 103 bits (258), Expect = 6.950e-25
Identity = 47/55 (85.45%), Postives = 52/55 (94.55%), Query Frame = 1
Query:  160 MLISSTRAQTPEELDPVWYPVNRLRNVAVRAVTTTHFLMTDIDIWPDVNAYQALH 324
            M+IS+T AQ+PEELDPVWYPVNRLRNVAV+AV T+HFLMTDIDIWPDVNAY ALH
Sbjct:    1 MVISATAAQSPEELDPVWYPVNRLRNVAVKAVKTSHFLMTDIDIWPDVNAYSALH 55          
BLAST of mRNA_H-elongata_contig78113.15481.1 vs. uniprot
Match: B7G485_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G485_PHATC)

HSP 1 Score: 85.9 bits (211), Expect = 2.480e-17
Identity = 45/109 (41.28%), Postives = 59/109 (54.13%), Query Frame = 1
Query:    1 IAQTSQNRFWMLPFLCKRW--PGPISIAILEEDREVRVVKWLVACGTLPEELCSRMLISSTRAQTPEELDPVWYPVNRLRNVAVRAVTTTHFLMTDIDIWPDVNAYQAL 321
            + Q SQ+R WM+   C+RW    P+SIA+        V   LVA G  PE+L S   + ST A   +      YPVN LRN+A RAVTTTH +  D+D WP  + +  L
Sbjct:  158 VTQLSQDRLWMMEHHCQRWGPSHPMSIAVFTNQTVAEVRSQLVALGCAPEQLASVQTLPSTAAAVSD------YPVNVLRNLAFRAVTTTHIVYVDVDFWPSADLHATL 260          
BLAST of mRNA_H-elongata_contig78113.15481.1 vs. uniprot
Match: A0A7S3K145_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K145_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 1.230e-16
Identity = 42/109 (38.53%), Postives = 63/109 (57.80%), Query Frame = 1
Query:    1 IAQTSQNRFWMLPFLCKRWPGPISIAIL-EEDREVRVVKWLVACGTLPEELCSRMLISSTRAQTPEELDPVWYPVNRLRNVAVRAVTTTHFLMTDIDIWPDVNAYQALH 324
            + Q +  R WML F+C+RW GPI IA+  ++ +E+  ++     G +  ++ S        A      D   YPVNRLRN+A++ V T+HFL+ DID+WPD   Y+ LH
Sbjct:  151 VTQATTERLWMLKFICRRWSGPIVIAVYSQQGKEIPNLEKFCPGGQVHYQIIS--------AAKEIFSDATKYPVNRLRNLALKHVQTSHFLLHDIDLWPDSTLYKRLH 251          
BLAST of mRNA_H-elongata_contig78113.15481.1 vs. uniprot
Match: A0A8J5XX44_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XX44_DIALT)

HSP 1 Score: 83.2 bits (204), Expect = 2.210e-16
Identity = 42/113 (37.17%), Postives = 62/113 (54.87%), Query Frame = 1
Query:    1 IAQTSQNRFWMLPFLCKRWPGPISIAILEEDREVRVVKW------LVACGTLPEELCSRMLISSTRAQTPEELDPVWYPVNRLRNVAVRAVTTTHFLMTDIDIWPDVNAYQAL 321
            ++QTS+ R WM+  LC RW GP++I++       +V+        L ACG+   E   R+ +   R +  E      YP+N+LRN+A+  VTTTH L+ DID+WP    Y  L
Sbjct:  208 VSQTSEERIWMIEHLCDRWAGPLAISVHVRGSPHKVMAVHQRADRLAACGSTSGE--PRLTLEVLRGKKEEA-----YPINKLRNLAISRVTTTHMLLVDIDLWPSAELYAVL 313          
BLAST of mRNA_H-elongata_contig78113.15481.1 vs. uniprot
Match: A0A1Z5JVV1_FISSO (Glycosyltransferase-like protein LARGE n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JVV1_FISSO)

HSP 1 Score: 82.8 bits (203), Expect = 2.790e-16
Identity = 44/108 (40.74%), Postives = 59/108 (54.63%), Query Frame = 1
Query:    1 IAQTSQNRFWMLPFLCKRWPGPISIAILEEDREVRVVKWLVACGTLPEELCSRMLISSTRAQTPEELDPVWYPVNRLRNVAVRAVTTTHFLMTDIDIWPDVNAYQALH 324
            + QTS++R WML + C+RWPGPIS+A+      +  VK  + C        SR+ I      + EE     YPVN LRN A+RAV T+H +  DID W   + Y  LH
Sbjct:  136 VTQTSEDRLWMLQYHCQRWPGPISLAVFT-PLPLSEVKEQIHCSN-----SSRLTIQLVSGYSEEE-----YPVNVLRNTALRAVQTSHVVYVDIDFWAATDLYDLLH 232          
BLAST of mRNA_H-elongata_contig78113.15481.1 vs. uniprot
Match: A0A1Z5KR38_FISSO (Glycosyltransferase-like protein LARGE n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KR38_FISSO)

HSP 1 Score: 80.9 bits (198), Expect = 1.380e-15
Identity = 42/107 (39.25%), Postives = 60/107 (56.07%), Query Frame = 1
Query:    1 IAQTSQNRFWMLPFLCKRWPGPISIAILEEDREVRVVKWLVACGTLPEELCSRMLISSTRAQTPEELDPVWYPVNRLRNVAVRAVTTTHFLMTDIDIWPDVNAYQAL 321
            + QTS++R WML + C+RWPGPISIAI  +   +++   +    +      SR+ +      + EE     YPVN LRN A+RAV TTH +  DID W   + Y +L
Sbjct:  149 VTQTSEDRLWMLQYHCQRWPGPISIAIYTQLPLLQIQDQIHCANS------SRLTLQLVSGYSEEE-----YPVNVLRNTALRAVQTTHVVYVDIDFWTATDLYDSL 244          
BLAST of mRNA_H-elongata_contig78113.15481.1 vs. uniprot
Match: A0A196SG44_BLAHN (Glycosyltransferase-like protein LARGE1 n=1 Tax=Blastocystis sp. subtype 1 (strain ATCC 50177 / NandII) TaxID=478820 RepID=A0A196SG44_BLAHN)

HSP 1 Score: 79.3 bits (194), Expect = 3.180e-15
Identity = 44/108 (40.74%), Postives = 61/108 (56.48%), Query Frame = 1
Query:    1 IAQTSQNRFWMLPFLCKRWPGPISIA-ILEEDREVRVVKWLVACGTLPEELCSRMLISSTRAQTPEELDPVWYPVNRLRNVAVRAVTTTHFLMTDIDIWPDVNAYQAL 321
            ++ TS  R + LPFL  RW GP+S+A IL    E   +   +A   LP    SR+ I       P E     YP NRLRN+A++ +T++HF + D+D+WP  NAY AL
Sbjct:   55 LSHTSVQRLFFLPFLLDRWGGPLSLAVILASSEEESFLDQFLAEHPLP----SRLTICRFLTSKPSE-----YPYNRLRNIAMKHITSSHFWVMDMDMWPSDNAYNAL 153          
BLAST of mRNA_H-elongata_contig78113.15481.1 vs. uniprot
Match: A0A7S0J5T3_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0J5T3_9EUKA)

HSP 1 Score: 79.0 bits (193), Expect = 6.350e-15
Identity = 43/109 (39.45%), Postives = 67/109 (61.47%), Query Frame = 1
Query:    1 IAQTSQNRFWMLPFLCKRWPGPISIAI-LEEDREVRVV-KWLVACGTLPEELCSRMLISSTRAQTPEELDPVWYPVNRLRNVAVRAVTTTHFLMTDIDIWPDVNAYQAL 321
            ++QTS++R WM+  L KRW G ISIA+ +  ++E+++  K L   G  P        I   R +  +      YP+N LRNVA++AV T+HFL++DID+WP V++Y  +
Sbjct:  157 VSQTSEDRVWMVEHLVKRWGGAISIAVYVVTEKEIKLHRKRLAKIGRQPGSS-----IIEVRGRLSDG-----YPINALRNVALKAVRTSHFLLSDIDLWPSVDSYNEI 255          
BLAST of mRNA_H-elongata_contig78113.15481.1 vs. uniprot
Match: A0A196SE66_BLAHN (Glycosyltransferase-like protein LARGE1 n=1 Tax=Blastocystis sp. subtype 1 (strain ATCC 50177 / NandII) TaxID=478820 RepID=A0A196SE66_BLAHN)

HSP 1 Score: 79.0 bits (193), Expect = 6.740e-15
Identity = 40/116 (34.48%), Postives = 61/116 (52.59%), Query Frame = 1
Query:    4 AQTSQNRFWMLPFLCKRWPGPISIAILEEDREVRVVKWLVACGTLPEELCSRMLISSTRAQTPEEL----DPVW------YPVNRLRNVAVRAVTTTHFLMTDIDIWPDVNAYQAL 321
            +QTS  R + L +L KRWPGP+SIA+     E+R  +  +     P  L   + I   +++            W      YP+NRLRN+A+  V T+HF++ D+D+WP  + Y AL
Sbjct:  196 SQTSTQRLFYLEYLLKRWPGPMSIAVFVHQHELRQTEKFIRRSHFPARLHLLLYIVDVKSEGDRVCRNNGKQSWCYAQSVYPINRLRNIAIADVATSHFILFDMDVWPSHDTYAAL 311          
BLAST of mRNA_H-elongata_contig78113.15481.1 vs. uniprot
Match: A0A4D9CQX5_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CQX5_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 1.430e-14
Identity = 45/115 (39.13%), Postives = 61/115 (53.04%), Query Frame = 1
Query:    1 IAQTSQNRFWMLPFLCKRWPGPISIAIL------EEDREVRVVKW--LVACGTLPEELCSRMLISSTRAQTPEELDPVWYPVNRLRNVAVRAVTTTHFLMTDIDIWPDVNAYQAL 321
            ++Q+S +R WMLP +C+RW GPI +AI       E D  +  +K   L      P    S  + +S  A       P  YPVN LRN+A+  V TTHFL+TD+D+WP    Y  L
Sbjct:  166 VSQSSPDRIWMLPHICERWEGPIIVAIFMHGFTAEHDAFMANLKCPQLQCLPVHPSVPASSSIPASVWAA------PNLYPVNALRNLAISEVRTTHFLLTDMDLWPSRRLYPLL 274          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig78113.15481.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LP29_ECTSI6.950e-2585.45Glycosyltransferase, family GT49 n=1 Tax=Ectocarpu... [more]
B7G485_PHATC2.480e-1741.28Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
A0A7S3K145_9STRA1.230e-1638.53Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A8J5XX44_DIALT2.210e-1637.17Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]
A0A1Z5JVV1_FISSO2.790e-1640.74Glycosyltransferase-like protein LARGE n=1 Tax=Fis... [more]
A0A1Z5KR38_FISSO1.380e-1539.25Glycosyltransferase-like protein LARGE n=1 Tax=Fis... [more]
A0A196SG44_BLAHN3.180e-1540.74Glycosyltransferase-like protein LARGE1 n=1 Tax=Bl... [more]
A0A7S0J5T3_9EUKA6.350e-1539.45Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]
A0A196SE66_BLAHN6.740e-1534.48Glycosyltransferase-like protein LARGE1 n=1 Tax=Bl... [more]
A0A4D9CQX5_9STRA1.430e-1439.13Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig78113contigH-elongata_contig78113:419..1559 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score105.1
Seed ortholog evalue1.8e-20
Seed eggNOG ortholog2880.D8LP29
KEGG koko:K09668
KEGG Pathwayko00515,ko01100,map00515,map01100
EggNOG free text desc.protein O-linked glycosylation
EggNOG OGsKOG3765@1,KOG3765@2759
COG Functional cat.A
CAZyGT49,GT8
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01003
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionGlycosyltransferase, family GT49
Ec32 orthologEc-06_006800.1
Exons3
Model size324
Cds size294
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig78113.15481.1prot_H-elongata_contig78113.15481.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig78113 449..1559 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931185.929103-UTR-H-elongata_contig78113:418..4481622931185.929103-UTR-H-elongata_contig78113:418..448Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig78113 419..448 +
1691679733.2502823-UTR-H-elongata_contig78113:418..4481691679733.2502823-UTR-H-elongata_contig78113:418..448Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig78113 419..448 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931185.952162-CDS-H-elongata_contig78113:448..5261622931185.952162-CDS-H-elongata_contig78113:448..526Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78113 449..526 +
1691679733.2731464-CDS-H-elongata_contig78113:448..5261691679733.2731464-CDS-H-elongata_contig78113:448..526Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78113 449..526 +
1622931185.9709542-CDS-H-elongata_contig78113:546..5701622931185.9709542-CDS-H-elongata_contig78113:546..570Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78113 547..570 +
1691679733.281266-CDS-H-elongata_contig78113:546..5701691679733.281266-CDS-H-elongata_contig78113:546..570Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78113 547..570 +
1622931185.9873178-CDS-H-elongata_contig78113:1367..15591622931185.9873178-CDS-H-elongata_contig78113:1367..1559Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78113 1368..1559 +
1691679733.2894428-CDS-H-elongata_contig78113:1367..15591691679733.2894428-CDS-H-elongata_contig78113:1367..1559Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78113 1368..1559 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig78113.15481.1

>prot_H-elongata_contig78113.15481.1 ID=prot_H-elongata_contig78113.15481.1|Name=mRNA_H-elongata_contig78113.15481.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=98bp
MLPFLCKRWPGPISIAILEEDREVRVVKWLVACGTLPEELCSRMLISSTR
AQTPEELDPVWYPVNRLRNVAVRAVTTTHFLMTDIDIWPDVNAYQALH
back to top

mRNA from alignment at H-elongata_contig78113:419..1559+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig78113.15481.1 ID=mRNA_H-elongata_contig78113.15481.1|Name=mRNA_H-elongata_contig78113.15481.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1141bp|location=Sequence derived from alignment at H-elongata_contig78113:419..1559+ (Himanthalia elongata Himel1 dioecious)
ATCGCGCAGACATCCCAGAATCGTTTCTGGATGCTTCCGTTCTTGTGCAA GCGATGGCCCGGTCCCATCTCGATCGCGATCCTGGAAGAAGATAGAGAGG TGAGGGTGGTTGGGTTTTGGAGGGAGAGGTGAAGTGGCTCGTTGCTTGCG GGGTGTGTAAAATAACTCGTCTCCTACTGTGTGTGCACAGTTGATGGTTT TCGGTAGGGAGGCAGACATGCAGACAAATGCTGACAAGGGGCATGCATAC CGGTATATCAATACAGCCTAAAAAATAAATTATATAGTAGTAATAGTCTG TAAGGTCAACGGCGAACAGCAGAATTTAGAAAGGCCCACTGAGAAAAAGC GCCGTCTATATTATATATATATATATATATTAAGTCGTGGGTTTCCGGAA AAAATAGGGTGGGCCCTGGAAACCCAAGTGCTGGGAAGCCGCCGTCGAAC ACGCACGAATATACCGGGGTTGGCGTGACCGTTGTCACTCTACTCGTGGT CTTGTTGTAGCTCCTCCTCCTGCTCTGCAGCGTTTGGCTTTGTTCGGGTG CTAGGTCGGAGACGTGGTCATAGTCGACACAGCCACAGCAGTATGAGTAT CTTCCGCTCGAGCGACTCTAGCACGTGGAACAGGGGGGCTCGAGTGGGGT GGGGGCGGGGGGTTATCGGGTTACCTTTGCGCACGGACCCCTTTTTGCGC TTCGTCCTTAAAAACACTCACGCTATCATCATGAAGTATGTGGTACAGTA GACGATGTGGGCACGTTATAGGACAGTGTGATGCCTATCCCAGCCAAAAC TTCACCGCCGTGCGGATGTATGCGTAGGCTCAGTCACGCGGCCGCAGCAA AACGAAACGCACTACGCTCGCTTGACTAACCTTGTCTGACTCCGGGTAAT GGTCCGACGAATGGTCCCTCTCTCTCTCTTTATCTCCCTTTCTCTCCAGA CCCTGCCGGAAGAGCTATGCAGCCGAATGCTTATAAGCTCTACGAGGGCG CAAACCCCGGAGGAGCTTGACCCTGTATGGTACCCGGTGAACCGCCTCAG GAACGTGGCCGTGAGGGCGGTGACCACCACCCACTTCTTGATGACCGATA TCGACATCTGGCCCGACGTGAACGCCTACCAAGCGCTGCAC
back to top

Coding sequence (CDS) from alignment at H-elongata_contig78113:419..1559+

>mRNA_H-elongata_contig78113.15481.1 ID=mRNA_H-elongata_contig78113.15481.1|Name=mRNA_H-elongata_contig78113.15481.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=588bp|location=Sequence derived from alignment at H-elongata_contig78113:419..1559+ (Himanthalia elongata Himel1 dioecious)
ATGCTTCCGTTCTTGTGCAAGCGATGGCCCGGTCCCATCTCGATCGCGAT
CCTGGAAGAAGATAGAGAGGTGAGGGTGATGCTTCCGTTCTTGTGCAAGC
GATGGCCCGGTCCCATCTCGATCGCGATCCTGGAAGAAGATAGAGAGGTG
AGGGTGGTGAAGTGGCTCGTTGCTTGCGGGGTGAAGTGGCTCGTTGCTTG
CGGGACCCTGCCGGAAGAGCTATGCAGCCGAATGCTTATAAGCTCTACGA
GGGCGCAAACCCCGGAGGAGCTTGACCCTGTATGGTACCCGGTGAACCGC
CTCAGGAACGTGGCCGTGAGGGCGGTGACCACCACCCACTTCTTGATGAC
CGATATCGACATCTGGCCCGACGTGAACGCCTACCAAGCGCTGCACACCC
TGCCGGAAGAGCTATGCAGCCGAATGCTTATAAGCTCTACGAGGGCGCAA
ACCCCGGAGGAGCTTGACCCTGTATGGTACCCGGTGAACCGCCTCAGGAA
CGTGGCCGTGAGGGCGGTGACCACCACCCACTTCTTGATGACCGATATCG
ACATCTGGCCCGACGTGAACGCCTACCAAGCGCTGCAC
back to top