mRNA_H-elongata_contig7810.15480.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig7810.15480.1 vs. uniprot
Match: D7FUP1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUP1_ECTSI) HSP 1 Score: 304 bits (779), Expect = 1.210e-96 Identity = 219/423 (51.77%), Postives = 265/423 (62.65%), Query Frame = 1
Query: 1 WDWADPWGQEAAWGASAWDVGTTQETRLYRDSDAVPTPGTPPKRA------IYTPPDPERGGGVRGS-WGT----GTDQTGAGFHSAGTATVGVDGDA-AVATVAAARRKEQ--EELARALTETREELENAREVEEGLRN---RMLNTSACVFH--------SSALRAQEEAKASTAAAASAAGERAKRAEALVKQREEEARENATAVGQWLVTLGLEQQSLRGQLVAEQSNSTLLTKELVDLRETAKKAELRGSSSEAKLKVALEDVAVLDEGLKQYMDGDGQRRTPRPSHG--IWRRVSEAYLHPLLPSKLKTPSLEEREVDKLNRTLGRALENNTALAEAVKSKDELVSNLNSRIKQFQLQAVRRKKGYRALKLGLADLTREASTGNLVQSKESMAIILVVAMVRTASILDQTSAVIFAQ 1188
WDWADPWGQ A+WGA W G + P P K I + PD G GV GS WG G ++ G A A +G G+A A A A R E ELARA LE AR+V+ LR R L S + +AL+ +EE KA+ AAA+AA E+ ++AEA ++ E A+ENATA GQWLV+LGLE++ L+GQL A Q+NST L +EL L+E+A +AELR +SSEAKL++A+ED+ VLDEGLK +MDGDGQ R G WRRVSEAYL PLLPSKLK P+ EE E KLNR+LGRALENNTALAEAV SKD+LV LNSRIKQFQL AVRRKKGYRALKLGLA+LT E VQ+KE+M IL V M+ T+SIL+ A + AQ
Sbjct: 8 WDWADPWGQGASWGAPGWAPGAERTPESQPGGSPPPAPSHTSKEELDGGHPIGSVPD---GAGVAGSGWGRHHSGGGERPGVAPTVAAGAALGAGGEATADAAEKGATRNEGGVTELARAXXXXXXXLEEARKVQAELRQPTRRALPASRAPWFVRSVVPGKRTALKEEEEGKAAALAAATAAEEKTEKAEAFALRQAESAKENATAAGQWLVSLGLEREELKGQLAAAQTNSTSLLEELSALKESAVEAELRANSSEAKLRMAMEDIEVLDEGLKLFMDGDGQPRQQSSRAGPLSWRRVSEAYLRPLLPSKLKAPTPEELEALKLNRSLGRALENNTALAEAVSSKDDLVKELNSRIKQFQLHAVRRKKGYRALKLGLAELTNE------VQAKETMMTILTVCMLGTSSILEGMDATLDAQ 421
BLAST of mRNA_H-elongata_contig7810.15480.1 vs. uniprot
Match: A0A6H5K749_9PHAE (WW domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K749_9PHAE) HSP 1 Score: 269 bits (688), Expect = 1.160e-77 Identity = 196/422 (46.45%), Postives = 240/422 (56.87%), Query Frame = 1
Query: 1 WDWADPWGQEAAWGASAWDVGTTQETRLYRDSDAVPTPGTPPKRAIYTPPDPERGGGVRGSWGTGTDQTGAGF---HSAGTATVGVDGDAAVATVAAARRKEQEELARALTETREELEN---------------------AREVEEGLRNRMLNTSACVFHSSALRAQEEAKASTAAAASAAGERAKRAEALVKQREEEARENATAVGQWLVTLGLEQQSLRGQLVAEQSNSTLLTKELVDLRETAKKAELRGSSSEAKLKVALEDVAVLDEGLKQYMDGDGQRRTPRPSHG--IWRRVSEAYLHPLLPSKLKTPSLEEREVDKLNRTLGRALENNTALAEAVKSKDELVSNLNSRIKQFQLQAVRRKKGYRALKLGLADLTREASTGNLVQSKESMAIILVVAMVRTASILDQTSAVIFAQ 1188
WDWADPWGQ A+WGA W G + + P P K + GG GS GT G+G+ HS G GV A AR+V+ LR +AL+ +EE KA+ AAA+ ++AEA ++ E A+ENATA GQWLV+LGLE++ L+GQL A Q+NST L +EL L+E+A +AELR +SSE KL++A+ED+ VLDEGLK +MDGDGQ R G WRRVS+AYL PLLPSKLK P+ EE E KLNR+LGRALENNTALAEAV SKD+LV LNSRIKQFQL AVRRKKGYRALKLGLA+LT E VQ+KE+M IL V M+ T+SIL+ A + AQ
Sbjct: 533 WDWADPWGQGASWGAPGWAPGAERTQEIQPGGSPPPAPSPIFKEELD-------GGHPIGSVPDGTGVAGSGWGRHHSGGGERPGVASKVAAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARQVQAELR-------------AALKKEEEGKAAALAAATXXXXXTEKAEAFALRQAESAKENATAAGQWLVSLGLEREELKGQLAAAQTNSTSLLEELSALKESAVEAELRANSSETKLRMAMEDIEVLDEGLKLFMDGDGQPRQQSSRAGPLSWRRVSDAYLRPLLPSKLKAPTPEELEALKLNRSLGRALENNTALAEAVSSKDDLVKELNSRIKQFQLHAVRRKKGYRALKLGLAELTNE------VQAKETMMTILTVCMLGTSSILEGMYASLEAQ 928 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7810.15480.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig7810.15480.1 >prot_H-elongata_contig7810.15480.1 ID=prot_H-elongata_contig7810.15480.1|Name=mRNA_H-elongata_contig7810.15480.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=399bp WDWADPWGQEAAWGASAWDVGTTQETRLYRDSDAVPTPGTPPKRAIYTPPback to top mRNA from alignment at H-elongata_contig7810:3447..7663+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig7810.15480.1 ID=mRNA_H-elongata_contig7810.15480.1|Name=mRNA_H-elongata_contig7810.15480.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4217bp|location=Sequence derived from alignment at H-elongata_contig7810:3447..7663+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig7810:3447..7663+ >mRNA_H-elongata_contig7810.15480.1 ID=mRNA_H-elongata_contig7810.15480.1|Name=mRNA_H-elongata_contig7810.15480.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2394bp|location=Sequence derived from alignment at H-elongata_contig7810:3447..7663+ (Himanthalia elongata Himel1 dioecious)back to top |