mRNA_H-elongata_contig78082.15478.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig78082.15478.1
Unique NamemRNA_H-elongata_contig78082.15478.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig78082.15478.1 vs. uniprot
Match: D8LKK9_ECTSI (Kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKK9_ECTSI)

HSP 1 Score: 121 bits (304), Expect = 1.110e-30
Identity = 54/89 (60.67%), Postives = 69/89 (77.53%), Query Frame = 1 
Query:    1 KLAGFLCPYFGVVKVANYAHIGGNGDKVAETSSYFLVLQDMCSGFESPCAIDMKMGTTTVEPGEREEKKLRVLRKYPSQRIVGFRYVGM 267
            +LA FLCPYFG VKV    H   +G+ +  T  +FL+L+D+CSG ++PCA+D+KMG  TVEPGEREEKK+  LRKYP+Q +VGFRYVGM
Sbjct:  214 ELASFLCPYFGAVKVRTDGHTEDDGEVIEPTCMHFLILEDLCSGLDNPCALDVKMGRVTVEPGEREEKKIGQLRKYPNQPMVGFRYVGM 302
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BLAST of mRNA_H-elongata_contig78082.15478.1 vs. uniprot
Match: A0A0L0FST4_9EUKA (Kinase n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0FST4_9EUKA)

HSP 1 Score: 55.1 bits (131), Expect = 3.590e-7
Identity = 26/60 (43.33%), Postives = 37/60 (61.67%), Query Frame = 1 
Query:   88 ETSSYFLVLQDMCSGFESPCAIDMKMGTTTVEPGEREEKKLRVLRKYPSQRIVGFRYVGM 267
            E  + +LV+++   GF  PC +D+KMGT T       EK  R  +KYP Q+ +GFR+VGM
Sbjct:    8 EGDTDYLVMENSVYGFVRPCVMDLKMGTKTYGEDATPEKIAREEKKYPPQKTLGFRFVGM 67
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BLAST of mRNA_H-elongata_contig78082.15478.1 vs. uniprot
Match: A0A196SC64_BLAHN (Kinase n=1 Tax=Blastocystis sp. subtype 1 (strain ATCC 50177 / NandII) TaxID=478820 RepID=A0A196SC64_BLAHN)

HSP 1 Score: 54.7 bits (130), Expect = 8.590e-7
Identity = 26/55 (47.27%), Postives = 34/55 (61.82%), Query Frame = 1 
Query:  103 FLVLQDMCSGFESPCAIDMKMGTTTVEPGEREEKKLRVLRKYPSQRIVGFRYVGM 267
            F+ L D+  G+  P  ID+K+GT T E    +EK  R  +KYP QRI+GFR  GM
Sbjct:   81 FMALDDLTFGYNKPSVIDLKIGTKTWEEDAPKEKIERESKKYPLQRIIGFRLTGM 135
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BLAST of mRNA_H-elongata_contig78082.15478.1 vs. uniprot
Match: R4UMM4_COPFO (Kinase n=1 Tax=Coptotermes formosanus TaxID=36987 RepID=R4UMM4_COPFO)

HSP 1 Score: 52.0 bits (123), Expect = 5.510e-6
Identity = 25/57 (43.86%), Postives = 39/57 (68.42%), Query Frame = 1 
Query:  103 FLVLQDMCSGFESPCAIDMKMGTTTVEPGEREEKKLRVLRKY--PSQRIVGFRYVGM 267
            F++++D+ SGF SPC  D+K+GTT+ +P   EEKK R+ +K    + + +G R VGM
Sbjct:   21 FVIIEDLTSGFSSPCIADIKIGTTSWDPDAPEEKKSRMKKKRIGTTTQSLGVRIVGM 77
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig78082.15478.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LKK9_ECTSI1.110e-3060.67Kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 R... [more]
A0A0L0FST4_9EUKA3.590e-743.33Kinase n=1 Tax=Sphaeroforma arctica JP610 TaxID=66... [more]
A0A196SC64_BLAHN8.590e-747.27Kinase n=1 Tax=Blastocystis sp. subtype 1 (strain ... [more]
R4UMM4_COPFO5.510e-643.86Kinase n=1 Tax=Coptotermes formosanus TaxID=36987 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig78082contigH-elongata_contig78082:149..992 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score122.9
Seed ortholog evalue7.7e-26
Seed eggNOG ortholog2880.D8LKK9
Preferred nameIPMK
KEGG rclassRC00002,RC00078,RC01938
KEGG koko:K00915
KEGG ReactionR03478,R05800,R05801,R10065,R10953
KEGG Pathwayko00562,ko01100,ko04070,ko04138,map00562,map01100,map04070,map04138
KEGG ModuleM00132
GOsGO:0000823,GO:0000824,GO:0000825,GO:0001838,GO:0001841,GO:0002009,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0006066,GO:0006793,GO:0006796,GO:0007275,GO:0007399,GO:0007444,GO:0008150,GO:0008152,GO:0008440,GO:0009058,GO:0009653,GO:0009790,GO:0009792,GO:0009888,GO:0009987,GO:0016301,GO:0016310,GO:0016331,GO:0016740,GO:0016772,GO:0016773,GO:0019637,GO:0019751,GO:0021915,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032958,GO:0035148,GO:0035239,GO:0035295,GO:0043009,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043647,GO:0044237,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046165,GO:0046173,GO:0047326,GO:0048513,GO:0048598,GO:0048646,GO:0048729,GO:0048731,GO:0048856,GO:0051765,GO:0051766,GO:0060429,GO:0060562,GO:0070013,GO:0071704,GO:0072175,GO:0090407,GO:1901576,GO:1901615,GO:1901617
EggNOG free text desc.inositol phosphate biosynthetic process
EggNOG OGsKOG1620@1,KOG1620@2759
EC2.7.1.140,2.7.1.151
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Exons2
Model size267
Cds size267
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931185.6644323-CDS-H-elongata_contig78082:148..2171622931185.6644323-CDS-H-elongata_contig78082:148..217Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78082 149..217 -
1691679733.0847156-CDS-H-elongata_contig78082:148..2171691679733.0847156-CDS-H-elongata_contig78082:148..217Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78082 149..217 -
1622931185.679866-CDS-H-elongata_contig78082:794..9921622931185.679866-CDS-H-elongata_contig78082:794..992Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78082 795..992 -
1691679733.1080592-CDS-H-elongata_contig78082:794..9921691679733.1080592-CDS-H-elongata_contig78082:794..992Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78082 795..992 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig78082.15478.1prot_H-elongata_contig78082.15478.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig78082 149..992 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig78082.15478.1

>prot_H-elongata_contig78082.15478.1 ID=prot_H-elongata_contig78082.15478.1|Name=mRNA_H-elongata_contig78082.15478.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=89bp
KLAGFLCPYFGVVKVANYAHIGGNGDKVAETSSYFLVLQDMCSGFESPCA
IDMKMGTTTVEPGEREEKKLRVLRKYPSQRIVGFRYVGM
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mRNA from alignment at H-elongata_contig78082:149..992-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig78082.15478.1 ID=mRNA_H-elongata_contig78082.15478.1|Name=mRNA_H-elongata_contig78082.15478.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=844bp|location=Sequence derived from alignment at H-elongata_contig78082:149..992- (Himanthalia elongata Himel1 dioecious)
AAGCTCGCGGGCTTCCTGTGTCCCTACTTTGGAGTAGTGAAGGTTGCGAA
CTACGCCCACATTGGTGGTAATGGCGACAAGGTGGCGGAAACGTCCTCGT
ACTTCCTCGTGCTTCAGGATATGTGCAGCGGATTCGAAAGTCCCTGCGCC
ATAGACATGAAGATGGGCACGACCACGGTGGAGCCCGGGGAGCGGGAGGT
GATTCGAGACTTTTCGGTGTTTTTTTTGCTGGTGAACAAAATATGTCGAG
GAGTGAGATGTGCTGTATCGCAAAATTGATCGGTCGTCGTAGTGTTGATG
GGGACAGCGGTGGTGCGTAACACGTATGTGCTGCGGTTGTTCGTTGATGA
GTGGCTTGGGGATGATGGCGGTAGAAAATTCAGTCGATGCTGATAGCAAT
GTGCTACAGTACATGTTTCTTCATGCTATGCAGCGCTCTTGGAAACAGTT
TATCCATTTCCTCTTTTTCTTAAAATCCCCCATATGAACTCATTCTAACC
CTCCGAACATCCACGCCTTCTTAGCACCATGAGAGGTGCAGTCCGGGGGA
CCAACTATCTTCGGGTTCAAATGTGTACATTACTACCTTTGAGCAAAAAA
TCGTCACGTGTGATTAATCGTGTTCCCCAATAGTAAACTCATAAGGTCGA
CGGTATAATATTGGGGATCCCATTCTTTTCCATTATTTCTTTTCTCACGG
CTTGATGATACCACGGCACTGTCAGCTTTCCGGATCTTGTTACCCCATGC
CCCCGCGCGTTTTGACTTTTTACAGGAAAAGAAACTGAGAGTGCTGCGGA
AGTATCCCAGCCAGCGTATCGTGGGCTTCCGATACGTCGGTATG
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Coding sequence (CDS) from alignment at H-elongata_contig78082:149..992-

>mRNA_H-elongata_contig78082.15478.1 ID=mRNA_H-elongata_contig78082.15478.1|Name=mRNA_H-elongata_contig78082.15478.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=534bp|location=Sequence derived from alignment at H-elongata_contig78082:149..992- (Himanthalia elongata Himel1 dioecious)
AAGCTCGCGGGCTTCCTGTGTCCCTACTTTGGAGTAGTGAAGGTTGCGAA
CTACGCCCACATTGGTGGTAATGGCGACAAGGTGGCGGAAACGTCCTCGT
ACTTCCTCGTGCTTCAGGATATGTGCAGCGGATTCGAAAGTCCCTGCGCC
ATAGACATGAAGATGGGCACGACCACGGTGGAGCCCGGGGAGCGGGAGAA
GCTCGCGGGCTTCCTGTGTCCCTACTTTGGAGTAGTGAAGGTTGCGAACT
ACGCCCACATTGGTGGTAATGGCGACAAGGTGGCGGAAACGTCCTCGTAC
TTCCTCGTGCTTCAGGATATGTGCAGCGGATTCGAAAGTCCCTGCGCCAT
AGACATGAAGATGGGCACGACCACGGTGGAGCCCGGGGAGCGGGAGGAAA
AGAAACTGAGAGTGCTGCGGAAGTATCCCAGCCAGCGTATCGTGGGCTTC
CGATACGTCGGTATGGAAAAGAAACTGAGAGTGCTGCGGAAGTATCCCAG
CCAGCGTATCGTGGGCTTCCGATACGTCGGTATG
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