mRNA_H-elongata_contig78040.15476.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig78040.15476.1 vs. uniprot
Match: A0A6H5J5G9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J5G9_9PHAE) HSP 1 Score: 167 bits (424), Expect = 4.480e-49 Identity = 86/108 (79.63%), Postives = 94/108 (87.04%), Query Frame = 1
Query: 1 QSLETTLEESAARVMEVHLGTDDLVVGAALTGHAFQGGKTVQLDGVTTPWNTLALWDVGKLAKVGFLGVAEGLILGVAAGVEEVTAIATLQTILGAEHARAKLVRLPQ 324
QSLETT+ + A ME H+G DLVVGAALTGHAFQGG+TV+L GVTTPWNTLALWDV KLAK+GFLGVAEGL+ GV AGVEEVTAIA LQ +LGAEHARAKLVRLPQ
Sbjct: 170 QSLETTVGKDAVSGMEAHMGPADLVVGAALTGHAFQGGETVELTGVTTPWNTLALWDVAKLAKLGFLGVAEGLLPGVPAGVEEVTAIAALQALLGAEHARAKLVRLPQ 277
BLAST of mRNA_H-elongata_contig78040.15476.1 vs. uniprot
Match: D7FN87_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN87_ECTSI) HSP 1 Score: 167 bits (422), Expect = 8.940e-49 Identity = 85/111 (76.58%), Postives = 97/111 (87.39%), Query Frame = 1
Query: 1 QSLETTLEESAARVMEVHLGTDDLVVGAALTGHAFQGGKTVQLDGVTTPWNTLALWDVGKLAKVGFLGVAEGLILGVAAGVEEVTAIATLQTILGAEHARAKLVRLPQVKF 333
QSLETT+ + A ME ++G DLVVGAALTGHAF+GG+TV+L GVTTPWNTLALWDV KLAK+GFLGVAEGL+ GV AGVEEVTAIA LQ +LGAEHARAKLVRLPQV++
Sbjct: 181 QSLETTVGKDAVSGMEAYMGPADLVVGAALTGHAFRGGETVELTGVTTPWNTLALWDVAKLAKLGFLGVAEGLLPGVPAGVEEVTAIAALQVLLGAEHARAKLVRLPQVRW 291
BLAST of mRNA_H-elongata_contig78040.15476.1 vs. uniprot
Match: A0A7S2V0C8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V0C8_9STRA) HSP 1 Score: 95.5 bits (236), Expect = 3.740e-22 Identity = 52/111 (46.85%), Postives = 73/111 (65.77%), Query Frame = 1
Query: 1 QSLETTLEESAARVMEVHLGTDDLVVGAALTGHAFQGGKTVQLDGVTTPWNTLALWDVGKLAKVGFLGVAEGLILGVAAGVEEVTAIATLQTILGAEHARAKLVRLPQVKF 333
QSLE + ++ + D++VGAAL GH F G++V+ G T PWNTLALWD +L+ GF+ ++EGL+ GV+AGVEE TA+ LQ L E + AKLVRL Q+++
Sbjct: 54 QSLEMAVCREDYEELKAQMEPGDVLVGAALPGHIFSPGESVEAGGRTCPWNTLALWDTARLSLTGFIPLSEGLLPGVSAGVEEATALTLLQH-LKPETSGAKLVRLSQIEW 163
BLAST of mRNA_H-elongata_contig78040.15476.1 vs. uniprot
Match: A0A7S2TZH8_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TZH8_9EUKA) HSP 1 Score: 94.4 bits (233), Expect = 5.280e-22 Identity = 53/107 (49.53%), Postives = 73/107 (68.22%), Query Frame = 1
Query: 1 QSLETTLEESAARVMEVHLGTDDLVVGAALTGHAFQGGKTVQLDGVTTPWNTLALWDVGKLAKVGFLGVAEGLILGVAAGVEEVTAIATLQTILGAEHARAKLVRLP 321
QS+E +RV+ +L + LVVGAALT H F+ G +L+G+T+PWNTLA+WDV KLA FLG+++G++ GV GVEEV AI TL+ L + + AKL+ LP
Sbjct: 5 QSVEVMASPRISRVLVEYLQENTLVVGAALTDHLFKPGLQ-ELNGLTSPWNTLAVWDVSKLAHTNFLGISDGVVPGVQGGVEEVAAI-TLRQALHPKTSMAKLILLP 109
BLAST of mRNA_H-elongata_contig78040.15476.1 vs. uniprot
Match: A0A1Z5K272_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K272_FISSO) HSP 1 Score: 93.2 bits (230), Expect = 1.150e-20 Identity = 53/114 (46.49%), Postives = 70/114 (61.40%), Query Frame = 1
Query: 4 SLETTLEESAARVMEVHLGTDDLVVGAALTGHAFQGGKTVQLDGVTTPWNTLALWDVGKLAKVGFLGVAEGLILG----VAAGVEEVTAIATLQTILGAEHARAKLVRLPQVKF 333
S ET ++ + + HL D LVVGA L GH +G L G T+PWNTLA+WD+ KL+ GF V++GL+ + GVEEV AIA LQ +LG E+A+AKLV L V +
Sbjct: 133 SAETVVDRDGIQELLAHLTPDTLVVGARLPGHVVRGECVTLLSGTTSPWNTLAVWDLHKLSLTGFQLVSDGLLTDDKEEPSFGVEEVVAIALLQKLLGTENAKAKLVTLKHVDW 246
BLAST of mRNA_H-elongata_contig78040.15476.1 vs. uniprot
Match: F4NXG8_BATDJ (Uncharacterized protein n=2 Tax=Batrachochytrium dendrobatidis TaxID=109871 RepID=F4NXG8_BATDJ) HSP 1 Score: 91.7 bits (226), Expect = 2.360e-20 Identity = 55/108 (50.93%), Postives = 69/108 (63.89%), Query Frame = 1
Query: 1 QSLETTLEESAARVMEVHLGTDDLVVGAALTGHAFQGGKTVQLDGVTTPWNTLALWDVGKLAKVGFLGVAEGLILGVAAGVEEVTAIATLQTILGAEHARAKLVRLPQ 324
QS+E + + M D LVVG AL+GHAF GK +L+GVTTPWNTLALW V KL +GFL VAEG V GVEEV+AIA Q ++ HA+A L+R+ +
Sbjct: 111 QSVEAVVSANEIHTMISWFDQDTLVVGKALSGHAFTVGKQ-RLNGVTTPWNTLALWAVSKLKCLGFLMVAEGS-EDVQGGVEEVSAIAVFQKLVSPNHAKAILLRMSE 216
BLAST of mRNA_H-elongata_contig78040.15476.1 vs. uniprot
Match: A0A835Z311_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z311_9STRA) HSP 1 Score: 92.4 bits (228), Expect = 3.420e-20 Identity = 51/94 (54.26%), Postives = 64/94 (68.09%), Query Frame = 1
Query: 1 QSLETTLEESAARVMEVHLG-TDDLVVGAALTGHAFQGGKTVQLDGVTTPWNTLALWDVGKLAKVGFLGVAEGLILGVAAGVEEVTAIATLQTI 279
QSLET + +E L DLVVGAAL GH F G+ ++ G TTPWNTLALW V +LA++GFL V++G + GVAAGVEEV AI+ LQ +
Sbjct: 111 QSLETAATPALVSALEAELDPAQDLVVGAALPGHDFSPGEH-EITGTTTPWNTLALWSVPQLARLGFLTVSDGAVAGVAAGVEEVAAISLLQQL 203
BLAST of mRNA_H-elongata_contig78040.15476.1 vs. uniprot
Match: A0A507BTI1_9FUNG (Uncharacterized protein n=1 Tax=Synchytrium microbalum TaxID=1806994 RepID=A0A507BTI1_9FUNG) HSP 1 Score: 89.0 bits (219), Expect = 2.680e-19 Identity = 56/108 (51.85%), Postives = 66/108 (61.11%), Query Frame = 1
Query: 1 QSLETTLEESAARVMEVHLGTDDLVVGAALTGHAFQGGKTVQLDGVTTPWNTLALWDVGKLAKVGFLGVAEGLILGVAAGVEEVTAIATLQTILGAEHARAKLVRLPQ 324
QS+E V+ HL D LVVG H FQ + LDGVT PWNTLA+W V KLA GFL VAEG VA GVEEV+ IA LQTIL + ++AKL+R+ Q
Sbjct: 98 QSVEAVATREIVDVLISHLSEDTLVVGKCFKDHRFQP-PSQPLDGVTAPWNTLAIWSVKKLALTGFLLVAEGF-HDVAGGVEEVSVIALLQTILP-DSSKAKLIRMKQ 202
BLAST of mRNA_H-elongata_contig78040.15476.1 vs. uniprot
Match: A0A507DRK0_9FUNG (Uncharacterized protein n=1 Tax=Synchytrium endobioticum TaxID=286115 RepID=A0A507DRK0_9FUNG) HSP 1 Score: 88.2 bits (217), Expect = 2.740e-19 Identity = 55/106 (51.89%), Postives = 68/106 (64.15%), Query Frame = 1
Query: 1 QSLETTLEESAARVMEVHLGTDDLVVGAALTGHAFQGGKTVQLDGVTTPWNTLALWDVGKLAKVGFLGVAEGLILGVAAGVEEVTAIATLQTILGAEHARAKLVRL 318
QS+E + ++ V++ +L D LVVG H FQ G V L+GVT PWNTLALW V KLA GFL VAEGL GVA GVEEV+ IA QTI +AKL+++
Sbjct: 64 QSVEASASKALLDVLQSYLDEDTLVVGKCFKDHQFQCGPRV-LNGVTAPWNTLALWSVKKLALTGFLLVAEGL-YGVAGGVEEVSVIALHQTIRPTSS-KAKLIKI 166
BLAST of mRNA_H-elongata_contig78040.15476.1 vs. uniprot
Match: A0A1Z5KL79_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KL79_FISSO) HSP 1 Score: 89.4 bits (220), Expect = 3.460e-19 Identity = 52/114 (45.61%), Postives = 70/114 (61.40%), Query Frame = 1
Query: 4 SLETTLEESAARVMEVHLGTDDLVVGAALTGHAFQGGKTVQLDGVTTPWNTLALWDVGKLAKVGFLGVAEGLILG----VAAGVEEVTAIATLQTILGAEHARAKLVRLPQVKF 333
S ET + + + + HL D LVVG L GHA +G L G T+PWNTLA+W++ KL+ GF V++GL+ + GVEEV AIA LQ +LG E+A+AKLV L V +
Sbjct: 136 SAETVADHNDIQELLSHLTPDTLVVGGRLPGHAVRGECVTLLSGTTSPWNTLAVWNLHKLSLTGFQLVSDGLLTDDKEEPSFGVEEVVAIALLQKLLGTENAKAKLVSLKHVDW 249 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig78040.15476.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig78040.15476.1 >prot_H-elongata_contig78040.15476.1 ID=prot_H-elongata_contig78040.15476.1|Name=mRNA_H-elongata_contig78040.15476.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=111bp QSLETTLEESAARVMEVHLGTDDLVVGAALTGHAFQGGKTVQLDGVTTPWback to top mRNA from alignment at H-elongata_contig78040:128..1154- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig78040.15476.1 ID=mRNA_H-elongata_contig78040.15476.1|Name=mRNA_H-elongata_contig78040.15476.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1027bp|location=Sequence derived from alignment at H-elongata_contig78040:128..1154- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig78040:128..1154- >mRNA_H-elongata_contig78040.15476.1 ID=mRNA_H-elongata_contig78040.15476.1|Name=mRNA_H-elongata_contig78040.15476.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=666bp|location=Sequence derived from alignment at H-elongata_contig78040:128..1154- (Himanthalia elongata Himel1 dioecious)back to top |