mRNA_H-elongata_contig120028.1548.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig120028.1548.1
Unique NamemRNA_H-elongata_contig120028.1548.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig120028.1548.1 vs. uniprot
Match: D8LDU2_ECTSI (DNA topoisomerase (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDU2_ECTSI)

HSP 1 Score: 200 bits (508), Expect = 5.440e-57
Identity = 99/124 (79.84%), Postives = 111/124 (89.52%), Query Frame = 1
Query:   28 RYSEASFVKELEAQGVGRPSTYATILETLRNRAYVNMQGRSLTPSLTGFVVTDLLRQHFPDFTDTGFTAQMENKLDEIARGRKGRVEYLRDYYLGDEGLKATVERKRRAIDPLEAKRARLPGLE 399
            R+SEASF+KELEA+GVGRPSTYA+I+ TLR R YVN+QGRSLTPSLTGFVV DLLR+HFPDFTDTGFTA+ME+KLD IARG K RVEYL +YYLG++GLKA V  KR  IDPLEAKRARLPGLE
Sbjct:  651 RFSEASFIKELEAKGVGRPSTYASIIGTLRTRTYVNLQGRSLTPSLTGFVVADLLREHFPDFTDTGFTAKMEDKLDAIARGEKERVEYLSEYYLGEDGLKAKVASKRATIDPLEAKRARLPGLE 774          
BLAST of mRNA_H-elongata_contig120028.1548.1 vs. uniprot
Match: A0A6H5KCV2_9PHAE (TOP1Ac domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCV2_9PHAE)

HSP 1 Score: 192 bits (489), Expect = 5.310e-55
Identity = 94/119 (78.99%), Postives = 106/119 (89.08%), Query Frame = 1
Query:   43 SFVKELEAQGVGRPSTYATILETLRNRAYVNMQGRSLTPSLTGFVVTDLLRQHFPDFTDTGFTAQMENKLDEIARGRKGRVEYLRDYYLGDEGLKATVERKRRAIDPLEAKRARLPGLE 399
            SF+KELEA+GVGRPSTYA+I+ TLR R YVN+QGRSLTPSLTGFVV DLLR+HFPDFTDTGFTA+ME+KLD IARG K RVEYL +YYLG++GLKA V  KR  +DPLEAKRARLPGLE
Sbjct:  358 SFIKELEAKGVGRPSTYASIIGTLRTRTYVNLQGRSLTPSLTGFVVADLLREHFPDFTDTGFTAKMEDKLDAIARGEKERVEYLSEYYLGEDGLKAKVASKRATVDPLEAKRARLPGLE 476          
BLAST of mRNA_H-elongata_contig120028.1548.1 vs. uniprot
Match: A0A7S1DGF7_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1DGF7_HEMAN)

HSP 1 Score: 146 bits (369), Expect = 9.160e-43
Identity = 72/123 (58.54%), Postives = 95/123 (77.24%), Query Frame = 1
Query:   28 RYSEASFVKELEAQGVGRPSTYATILETLRNRAYVNMQGRSLTPSLTGFVVTDLLRQHFPDFTDTGFTAQMENKLDEIARGRKGRVEYLRDYYLGDEGLKATVERKRRAIDPLEAKRARLPGL 396
            RY+EASFVK+LEA+G+GRPSTYA+ILETL++R YV + G++L PSLTGFVVT LL  HF DF D  FTA+ME +LD+IA+G+  +  YL +YYLG+ GL+  V+R    I+  E +RA+LP L
Sbjct:    8 RYTEASFVKDLEAEGIGRPSTYASILETLKDREYVALDGKALMPSLTGFVVTSLLEDHFSDFVDITFTAKMEERLDKIAKGQGSKEGYLAEYYLGEAGLREKVKRGESGIEGDEGRRAKLPML 130          
BLAST of mRNA_H-elongata_contig120028.1548.1 vs. uniprot
Match: A0A2T4XF30_9BACT (DNA topoisomerase 1 n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A2T4XF30_9BACT)

HSP 1 Score: 140 bits (354), Expect = 3.470e-36
Identity = 67/121 (55.37%), Postives = 88/121 (72.73%), Query Frame = 1
Query:   28 RYSEASFVKELEAQGVGRPSTYATILETLRNRAYVNMQGRSLTPSLTGFVVTDLLRQHFPDFTDTGFTAQMENKLDEIARGRKGRVEYLRDYYLGDEGLKATVERKRRAIDPLEAKRARLP 390
            RY+EA+ VKELE +GVGRPSTYA+I+ T+++R Y    G++L P+   F VT+LL  HFPD  D+ FT+++ENKLD+IA G     EYLRDYYLG+EGL+A V  +   IDP EAK+  LP
Sbjct:  488 RYTEATLVKELENRGVGRPSTYASIISTIQDREYATKDGKTLVPTFIAFAVTELLEAHFPDLVDSDFTSELENKLDQIAEGTFDSTEYLRDYYLGEEGLRARVNTQEDLIDPQEAKKLDLP 608          
BLAST of mRNA_H-elongata_contig120028.1548.1 vs. uniprot
Match: UPI000D5801CA (DNA topoisomerase n=1 Tax=Salmonella enterica TaxID=28901 RepID=UPI000D5801CA)

HSP 1 Score: 129 bits (323), Expect = 1.030e-35
Identity = 61/116 (52.59%), Postives = 86/116 (74.14%), Query Frame = 1
Query:   28 RYSEASFVKELEAQGVGRPSTYATILETLRNRAYVNMQGRSLTPSLTGFVVTDLLRQHFPDFTDTGFTAQMENKLDEIARGRKGRVEYLRDYYLGDEGLKATVERKRRAIDPLEAK 375
            RYSEA+ ++ LE +GVGRPSTYA+I+ T+ +R Y   QG SL P+ TGFVVT+LLR+HFP+  DT FT+ ME KLDEIA G+   + YL+++YLG +GL+  V  + + I+P +A+
Sbjct:   24 RYSEAALIQFLEKEGVGRPSTYASIVSTILDRGYALRQGNSLVPTFTGFVVTELLRKHFPELVDTQFTSNMEEKLDEIAEGKLNYLPYLKEFYLGPKGLEKKVAEEDKKIEPEKAR 139          
BLAST of mRNA_H-elongata_contig120028.1548.1 vs. uniprot
Match: A0A835Z3T3_9STRA (DNA topoisomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3T3_9STRA)

HSP 1 Score: 139 bits (349), Expect = 1.760e-35
Identity = 78/142 (54.93%), Postives = 92/142 (64.79%), Query Frame = 1
Query:   28 RYSEASFVKELEAQGVGRPSTYATILETLRNRAYVNMQGRSLTPSLTGFVVTDLLRQHFPDFTDTGFTAQMENKLDEIARGRKGRVEYLRD-------------------YYLGDEGLKATVERKRRAIDPLEAKRARLPGL 396
            RY+EASFVKELEA GVGRPSTYATILETL+ R Y+  Q  +L PSL+ FVVT LL ++FPDF DT FTA+ME +LD+IARG+  R  YL+                    YY GDEGLKA V+     I   EA+RA LP L
Sbjct:  899 RYTEASFVKELEAVGVGRPSTYATILETLKERRYIQAQKSALAPSLSAFVVTRLLERYFPDFVDTQFTARMEEQLDQIARGQADRTAYLKQXXXXXXXXXXXXXXXXXXQYYSGDEGLKAKVDNTEAQIPSEEARRAWLPTL 1040          
BLAST of mRNA_H-elongata_contig120028.1548.1 vs. uniprot
Match: A0A0C1YJP1_9CYAN (DNA topoisomerase 1 n=4 Tax=Cyanobacteria TaxID=1117 RepID=A0A0C1YJP1_9CYAN)

HSP 1 Score: 138 bits (348), Expect = 2.310e-35
Identity = 66/124 (53.23%), Postives = 86/124 (69.35%), Query Frame = 1
Query:   28 RYSEASFVKELEAQGVGRPSTYATILETLRNRAYVNMQGRSLTPSLTGFVVTDLLRQHFPDFTDTGFTAQMENKLDEIARGRKGRVEYLRDYYLGDEGLKATVERKRRAIDPLEAKRARLPGLE 399
            RY+EA+ VK LE++G+GRPSTYA+++ T+ +R YV   G SLTP+ T F VTDLL  HFPD  D GFTA+ME  LD I+ G    + YL+D+Y GDEGL+  V+ +   IDP EA+   L GLE
Sbjct:  484 RYTEATLVKTLESEGIGRPSTYASVIGTIIDRGYVTANGSSLTPTFTAFAVTDLLSSHFPDLVDVGFTARMEQTLDHISTGEADWLPYLKDFYAGDEGLETQVQEQESQIDPAEARTVALDGLE 607          
BLAST of mRNA_H-elongata_contig120028.1548.1 vs. uniprot
Match: A0A3M1FQF9_9CHLR (DNA topoisomerase I (Fragment) n=1 Tax=Caldilineae bacterium TaxID=2420332 RepID=A0A3M1FQF9_9CHLR)

HSP 1 Score: 135 bits (340), Expect = 3.370e-35
Identity = 67/123 (54.47%), Postives = 85/123 (69.11%), Query Frame = 1
Query:   28 RYSEASFVKELEAQGVGRPSTYATILETLRNRAYVNMQGRSLTPSLTGFVVTDLLRQHFPDFTDTGFTAQMENKLDEIARGRKGRVEYLRDYYLGDEGLKATVERKRRAIDPLEAKRARLPGL 396
            RY+EA+ VK LEA+G+GRPSTYATI++T+++R YV  Q + L P+L  F VT LL +HF    DT FTA+ME KLD+IA G  G +EYLR +YLG+EGL+  V  K   IDP  A R   P L
Sbjct:   86 RYTEATLVKALEAEGIGRPSTYATIIDTIQDRGYVFKQRKELVPTLVAFAVTQLLEEHFEKLVDTHFTAEMEQKLDDIAAGAAGWLEYLRTFYLGEEGLQNLVRLKEAQIDPRTASRVNFPDL 208          
BLAST of mRNA_H-elongata_contig120028.1548.1 vs. uniprot
Match: A0A5Q4F9C0_9BACT (DNA topoisomerase 1 n=1 Tax=Balneolaceae bacterium TaxID=2053516 RepID=A0A5Q4F9C0_9BACT)

HSP 1 Score: 137 bits (345), Expect = 5.740e-35
Identity = 65/121 (53.72%), Postives = 88/121 (72.73%), Query Frame = 1
Query:   28 RYSEASFVKELEAQGVGRPSTYATILETLRNRAYVNMQGRSLTPSLTGFVVTDLLRQHFPDFTDTGFTAQMENKLDEIARGRKGRVEYLRDYYLGDEGLKATVERKRRAIDPLEAKRARLP 390
            R++EAS VK+LE  GVGRPSTYATI+ T+  R YV  +G +L P+ T F VT+LL +HFPD  D  FT+QME KLD+IA G++ R++YL+ YY G++GLK  VE++   IDP +A+   LP
Sbjct:  495 RFTEASLVKQLEKDGVGRPSTYATIIGTIMERDYVRKEGNALVPTFTAFAVTELLEKHFPDLVDEQFTSQMEQKLDDIATGKEDRLKYLKSYYEGEKGLKNMVEKQESRIDPQDARHISLP 615          
BLAST of mRNA_H-elongata_contig120028.1548.1 vs. uniprot
Match: A0A6I7NK58_9BACT (DNA topoisomerase I (Fragment) n=1 Tax=Balneolaceae bacterium TaxID=2053516 RepID=A0A6I7NK58_9BACT)

HSP 1 Score: 135 bits (341), Expect = 9.920e-35
Identity = 65/121 (53.72%), Postives = 90/121 (74.38%), Query Frame = 1
Query:   28 RYSEASFVKELEAQGVGRPSTYATILETLRNRAYVNMQGRSLTPSLTGFVVTDLLRQHFPDFTDTGFTAQMENKLDEIARGRKGRVEYLRDYYLGDEGLKATVERKRRAIDPLEAKRARLP 390
            RY+EA+ VKELE +GVGRPSTYATI+ T+++R Y    G++L P+ T F VT LL +HFP   D+ FT+++E+KLD+IA G+   V+YL DYY G++GLKA VE++   IDP +AK  +LP
Sbjct:  242 RYTEATLVKELEKRGVGRPSTYATIISTIQDRGYAKSDGKTLIPTYTAFAVTGLLEEHFPHLVDSEFTSELEHKLDQIAGGKYDPVKYLDDYYKGEDGLKAQVEKQDDIIDPQQAKILKLP 362          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig120028.1548.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDU2_ECTSI5.440e-5779.84DNA topoisomerase (Fragment) n=1 Tax=Ectocarpus si... [more]
A0A6H5KCV2_9PHAE5.310e-5578.99TOP1Ac domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A7S1DGF7_HEMAN9.160e-4358.54Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A2T4XF30_9BACT3.470e-3655.37DNA topoisomerase 1 n=1 Tax=Bacteroidetes bacteriu... [more]
UPI000D5801CA1.030e-3552.59DNA topoisomerase n=1 Tax=Salmonella enterica TaxI... [more]
A0A835Z3T3_9STRA1.760e-3554.93DNA topoisomerase n=1 Tax=Tribonema minus TaxID=30... [more]
A0A0C1YJP1_9CYAN2.310e-3553.23DNA topoisomerase 1 n=4 Tax=Cyanobacteria TaxID=11... [more]
A0A3M1FQF9_9CHLR3.370e-3554.47DNA topoisomerase I (Fragment) n=1 Tax=Caldilineae... [more]
A0A5Q4F9C0_9BACT5.740e-3553.72DNA topoisomerase 1 n=1 Tax=Balneolaceae bacterium... [more]
A0A6I7NK58_9BACT9.920e-3553.72DNA topoisomerase I (Fragment) n=1 Tax=Balneolacea... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig120028contigH-elongata_contig120028:305..1773 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score202.2
Seed ortholog evalue1.5e-49
Seed eggNOG ortholog2880.D8LDU2
KEGG koko:K03168
EggNOG free text desc.DNA topoisomerase type I activity
EggNOG OGsCOG0550@1,KOG1956@2759
EC5.99.1.2
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03032,ko03400
Hectar predicted targeting categoryother localisation
Exons2
Model size399
Cds size399
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929703.8396401-CDS-H-elongata_contig120028:304..5411622929703.8396401-CDS-H-elongata_contig120028:304..541Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig120028 305..541 +
1691679125.2561991-CDS-H-elongata_contig120028:304..5411691679125.2561991-CDS-H-elongata_contig120028:304..541Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig120028 305..541 +
1622929703.8556218-CDS-H-elongata_contig120028:1611..17731622929703.8556218-CDS-H-elongata_contig120028:1611..1773Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig120028 1612..1773 +
1691679125.2730682-CDS-H-elongata_contig120028:1611..17731691679125.2730682-CDS-H-elongata_contig120028:1611..1773Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig120028 1612..1773 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig120028.1548.1prot_H-elongata_contig120028.1548.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig120028 305..1773 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig120028.1548.1

>prot_H-elongata_contig120028.1548.1 ID=prot_H-elongata_contig120028.1548.1|Name=mRNA_H-elongata_contig120028.1548.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=133bp
MKESARSNLRYSEASFVKELEAQGVGRPSTYATILETLRNRAYVNMQGRS
LTPSLTGFVVTDLLRQHFPDFTDTGFTAQMENKLDEIARGRKGRVEYLRD
YYLGDEGLKATVERKRRAIDPLEAKRARLPGLE
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mRNA from alignment at H-elongata_contig120028:305..1773+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig120028.1548.1 ID=mRNA_H-elongata_contig120028.1548.1|Name=mRNA_H-elongata_contig120028.1548.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1469bp|location=Sequence derived from alignment at H-elongata_contig120028:305..1773+ (Himanthalia elongata Himel1 dioecious)
ATGAAAGAATCCGCGCGATCGAACCTCAGGTATTCGGAGGCGTCCTTTGT CAAGGAGCTGGAGGCTCAGGGAGTCGGCCGACCGTCCACGTACGCCACCA TTCTGGAAACCCTCCGCAACCGCGCGTACGTGAACATGCAGGGCCGCAGC CTGACGCCGAGCCTCACGGGGTTCGTAGTGACCGATCTCCTGCGGCAGCA CTTTCCAGATTTTACCGACACCGGCTTCACGGCGCAGGTGTTTTATTTGT TAGCTTTGTATTCGCCGGTCGTCGTGTGTTACTGTTCCTCAATACAATTG GGAGTCACGACCTAAGTTTGAAGCGAAGGGAAGACGAAAAGAGCGGAGGG CAGATATTTGAGAGTGAAAGATTAAAAAGAGAGCTGATATGGGAGATCAG TTTAAAATGCGGAAGTCGGAGTGATAATAACGTACGCGTGGAGGTTGAAG TTGAAGTTGAAGTTCAGGTGACGTTGCTGCCTAAGTTTTGAAGATATGGA GGATATGTTTGTTGATGTGGCCGATCGCCAACAGCGACGGCGGTCCCCGA GTTCTTTGGGTCTCGAAACTTTGGATCCCAGGGGGCGCGAAAAGCTTTCG ATATCACATTCGATATCACATTCGATATCACTTTCGATATCACATTCGAT ATCACATTCGATATCACATTCGATATCACATTCGATATCACATTCGATAT CACATTCGATATCATTGTGCGTACAACAGCAATACGCCGGCGCAGGCATG ACAGACGCGTCATATGTGTGCTATGCCGTGACGTGTACGCCACAAGTGAC GTTGGATCTCTTATTCAGCTCACGCTATTTAATACCGTTGTAGTTATTGT GGTTAGCCGTTGAGAGTTTGATTTGTCTTGGGCCTCCTCTTCTGCGTCGA TCGATGTACCTAAAGCTGGTCGAGAATTCTCGTGCGCGGACCGTAACGCT CTGTGCTAATCTGTAAAACGTATTGCGATGTTTATGATTTACGAATGATG TCTCGGTCCGTTGGGAATAGCGAAGATAAGAACGAAACGGATGCGAGGGG GGGGTCAGGAGGGGGGAGCATGCCGAGGCGAGCCACCGAAAAAGTGTCGA GAAGTGTTGAAATCGTTTATTGGTCGCGAACGCGATTCTTTTCCACCTCC CTTTCGGAGATCTCGTTTATCCGAGTTGTCTTTGGGTAACCGAGTCTCGT GGAAGTGCGCTTCGAGCGACTGACTGGCAGGGTATCAAATCAAGACTAAC TTACCTGCCAATCTGCCCCCGCCTCCTTCCTTCATATGTTTACATCTCCG AGGGAAGATGGAGAACAAGCTGGACGAGATCGCCAGGGGTAGAAAAGGCC GGGTGGAGTACCTCAGGGACTACTATCTTGGTGATGAGGGACTGAAGGCG ACGGTGGAGAGAAAAAGGCGGGCGATCGACCCTCTCGAGGCTAAGCGCGC TCGCTTACCGGGGCTGGAG
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Coding sequence (CDS) from alignment at H-elongata_contig120028:305..1773+

>mRNA_H-elongata_contig120028.1548.1 ID=mRNA_H-elongata_contig120028.1548.1|Name=mRNA_H-elongata_contig120028.1548.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=798bp|location=Sequence derived from alignment at H-elongata_contig120028:305..1773+ (Himanthalia elongata Himel1 dioecious)
ATGAAAGAATCCGCGCGATCGAACCTCAGGTATTCGGAGGCGTCCTTTGT
CAAGGAGCTGGAGGCTCAGGGAGTCGGCCGACCGTCCACGTACGCCACCA
TTCTGGAAACCCTCCGCAACCGCGCGTACGTGAACATGCAGGGCCGCAGC
CTGACGCCGAGCCTCACGGGGTTCGTAGTGACCGATCTCCTGCGGCAGCA
CTTTCCAGATTTTACCGACACCGGCTTCACGGCGCAGATGAAAGAATCCG
CGCGATCGAACCTCAGGTATTCGGAGGCGTCCTTTGTCAAGGAGCTGGAG
GCTCAGGGAGTCGGCCGACCGTCCACGTACGCCACCATTCTGGAAACCCT
CCGCAACCGCGCGTACGTGAACATGCAGGGCCGCAGCCTGACGCCGAGCC
TCACGGGGTTCGTAGTGACCGATCTCCTGCGGCAGCACTTTCCAGATTTT
ACCGACACCGGCTTCACGGCGCAGATGGAGAACAAGCTGGACGAGATCGC
CAGGGGTAGAAAAGGCCGGGTGGAGTACCTCAGGGACTACTATCTTGGTG
ATGAGGGACTGAAGGCGACGGTGGAGAGAAAAAGGCGGGCGATCGACCCT
CTCGAGGCTAAGCGCGCTCGCTTACCGGGGCTGGAGATGGAGAACAAGCT
GGACGAGATCGCCAGGGGTAGAAAAGGCCGGGTGGAGTACCTCAGGGACT
ACTATCTTGGTGATGAGGGACTGAAGGCGACGGTGGAGAGAAAAAGGCGG
GCGATCGACCCTCTCGAGGCTAAGCGCGCTCGCTTACCGGGGCTGGAG
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