prot_H-elongata_contig120028.1548.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig120028.1548.1
Unique Nameprot_H-elongata_contig120028.1548.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length133
Homology
BLAST of mRNA_H-elongata_contig120028.1548.1 vs. uniprot
Match: D8LDU2_ECTSI (DNA topoisomerase (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDU2_ECTSI)

HSP 1 Score: 200 bits (508), Expect = 5.440e-57
Identity = 99/124 (79.84%), Postives = 111/124 (89.52%), Query Frame = 0
Query:   10 RYSEASFVKELEAQGVGRPSTYATILETLRNRAYVNMQGRSLTPSLTGFVVTDLLRQHFPDFTDTGFTAQMENKLDEIARGRKGRVEYLRDYYLGDEGLKATVERKRRAIDPLEAKRARLPGLE 133
            R+SEASF+KELEA+GVGRPSTYA+I+ TLR R YVN+QGRSLTPSLTGFVV DLLR+HFPDFTDTGFTA+ME+KLD IARG K RVEYL +YYLG++GLKA V  KR  IDPLEAKRARLPGLE
Sbjct:  651 RFSEASFIKELEAKGVGRPSTYASIIGTLRTRTYVNLQGRSLTPSLTGFVVADLLREHFPDFTDTGFTAKMEDKLDAIARGEKERVEYLSEYYLGEDGLKAKVASKRATIDPLEAKRARLPGLE 774          
BLAST of mRNA_H-elongata_contig120028.1548.1 vs. uniprot
Match: A0A6H5KCV2_9PHAE (TOP1Ac domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCV2_9PHAE)

HSP 1 Score: 192 bits (489), Expect = 5.310e-55
Identity = 94/119 (78.99%), Postives = 106/119 (89.08%), Query Frame = 0
Query:   15 SFVKELEAQGVGRPSTYATILETLRNRAYVNMQGRSLTPSLTGFVVTDLLRQHFPDFTDTGFTAQMENKLDEIARGRKGRVEYLRDYYLGDEGLKATVERKRRAIDPLEAKRARLPGLE 133
            SF+KELEA+GVGRPSTYA+I+ TLR R YVN+QGRSLTPSLTGFVV DLLR+HFPDFTDTGFTA+ME+KLD IARG K RVEYL +YYLG++GLKA V  KR  +DPLEAKRARLPGLE
Sbjct:  358 SFIKELEAKGVGRPSTYASIIGTLRTRTYVNLQGRSLTPSLTGFVVADLLREHFPDFTDTGFTAKMEDKLDAIARGEKERVEYLSEYYLGEDGLKAKVASKRATVDPLEAKRARLPGLE 476          
BLAST of mRNA_H-elongata_contig120028.1548.1 vs. uniprot
Match: A0A7S1DGF7_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1DGF7_HEMAN)

HSP 1 Score: 146 bits (369), Expect = 9.160e-43
Identity = 72/123 (58.54%), Postives = 95/123 (77.24%), Query Frame = 0
Query:   10 RYSEASFVKELEAQGVGRPSTYATILETLRNRAYVNMQGRSLTPSLTGFVVTDLLRQHFPDFTDTGFTAQMENKLDEIARGRKGRVEYLRDYYLGDEGLKATVERKRRAIDPLEAKRARLPGL 132
            RY+EASFVK+LEA+G+GRPSTYA+ILETL++R YV + G++L PSLTGFVVT LL  HF DF D  FTA+ME +LD+IA+G+  +  YL +YYLG+ GL+  V+R    I+  E +RA+LP L
Sbjct:    8 RYTEASFVKDLEAEGIGRPSTYASILETLKDREYVALDGKALMPSLTGFVVTSLLEDHFSDFVDITFTAKMEERLDKIAKGQGSKEGYLAEYYLGEAGLREKVKRGESGIEGDEGRRAKLPML 130          
BLAST of mRNA_H-elongata_contig120028.1548.1 vs. uniprot
Match: A0A2T4XF30_9BACT (DNA topoisomerase 1 n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A2T4XF30_9BACT)

HSP 1 Score: 140 bits (354), Expect = 3.470e-36
Identity = 67/121 (55.37%), Postives = 88/121 (72.73%), Query Frame = 0
Query:   10 RYSEASFVKELEAQGVGRPSTYATILETLRNRAYVNMQGRSLTPSLTGFVVTDLLRQHFPDFTDTGFTAQMENKLDEIARGRKGRVEYLRDYYLGDEGLKATVERKRRAIDPLEAKRARLP 130
            RY+EA+ VKELE +GVGRPSTYA+I+ T+++R Y    G++L P+   F VT+LL  HFPD  D+ FT+++ENKLD+IA G     EYLRDYYLG+EGL+A V  +   IDP EAK+  LP
Sbjct:  488 RYTEATLVKELENRGVGRPSTYASIISTIQDREYATKDGKTLVPTFIAFAVTELLEAHFPDLVDSDFTSELENKLDQIAEGTFDSTEYLRDYYLGEEGLRARVNTQEDLIDPQEAKKLDLP 608          
BLAST of mRNA_H-elongata_contig120028.1548.1 vs. uniprot
Match: UPI000D5801CA (DNA topoisomerase n=1 Tax=Salmonella enterica TaxID=28901 RepID=UPI000D5801CA)

HSP 1 Score: 129 bits (323), Expect = 1.030e-35
Identity = 61/116 (52.59%), Postives = 86/116 (74.14%), Query Frame = 0
Query:   10 RYSEASFVKELEAQGVGRPSTYATILETLRNRAYVNMQGRSLTPSLTGFVVTDLLRQHFPDFTDTGFTAQMENKLDEIARGRKGRVEYLRDYYLGDEGLKATVERKRRAIDPLEAK 125
            RYSEA+ ++ LE +GVGRPSTYA+I+ T+ +R Y   QG SL P+ TGFVVT+LLR+HFP+  DT FT+ ME KLDEIA G+   + YL+++YLG +GL+  V  + + I+P +A+
Sbjct:   24 RYSEAALIQFLEKEGVGRPSTYASIVSTILDRGYALRQGNSLVPTFTGFVVTELLRKHFPELVDTQFTSNMEEKLDEIAEGKLNYLPYLKEFYLGPKGLEKKVAEEDKKIEPEKAR 139          
BLAST of mRNA_H-elongata_contig120028.1548.1 vs. uniprot
Match: A0A835Z3T3_9STRA (DNA topoisomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3T3_9STRA)

HSP 1 Score: 139 bits (349), Expect = 1.760e-35
Identity = 78/142 (54.93%), Postives = 92/142 (64.79%), Query Frame = 0
Query:   10 RYSEASFVKELEAQGVGRPSTYATILETLRNRAYVNMQGRSLTPSLTGFVVTDLLRQHFPDFTDTGFTAQMENKLDEIARGRKGRVEYLRD-------------------YYLGDEGLKATVERKRRAIDPLEAKRARLPGL 132
            RY+EASFVKELEA GVGRPSTYATILETL+ R Y+  Q  +L PSL+ FVVT LL ++FPDF DT FTA+ME +LD+IARG+  R  YL+                    YY GDEGLKA V+     I   EA+RA LP L
Sbjct:  899 RYTEASFVKELEAVGVGRPSTYATILETLKERRYIQAQKSALAPSLSAFVVTRLLERYFPDFVDTQFTARMEEQLDQIARGQADRTAYLKQXXXXXXXXXXXXXXXXXXQYYSGDEGLKAKVDNTEAQIPSEEARRAWLPTL 1040          
BLAST of mRNA_H-elongata_contig120028.1548.1 vs. uniprot
Match: A0A0C1YJP1_9CYAN (DNA topoisomerase 1 n=4 Tax=Cyanobacteria TaxID=1117 RepID=A0A0C1YJP1_9CYAN)

HSP 1 Score: 138 bits (348), Expect = 2.310e-35
Identity = 66/124 (53.23%), Postives = 86/124 (69.35%), Query Frame = 0
Query:   10 RYSEASFVKELEAQGVGRPSTYATILETLRNRAYVNMQGRSLTPSLTGFVVTDLLRQHFPDFTDTGFTAQMENKLDEIARGRKGRVEYLRDYYLGDEGLKATVERKRRAIDPLEAKRARLPGLE 133
            RY+EA+ VK LE++G+GRPSTYA+++ T+ +R YV   G SLTP+ T F VTDLL  HFPD  D GFTA+ME  LD I+ G    + YL+D+Y GDEGL+  V+ +   IDP EA+   L GLE
Sbjct:  484 RYTEATLVKTLESEGIGRPSTYASVIGTIIDRGYVTANGSSLTPTFTAFAVTDLLSSHFPDLVDVGFTARMEQTLDHISTGEADWLPYLKDFYAGDEGLETQVQEQESQIDPAEARTVALDGLE 607          
BLAST of mRNA_H-elongata_contig120028.1548.1 vs. uniprot
Match: A0A3M1FQF9_9CHLR (DNA topoisomerase I (Fragment) n=1 Tax=Caldilineae bacterium TaxID=2420332 RepID=A0A3M1FQF9_9CHLR)

HSP 1 Score: 135 bits (340), Expect = 3.370e-35
Identity = 67/123 (54.47%), Postives = 85/123 (69.11%), Query Frame = 0
Query:   10 RYSEASFVKELEAQGVGRPSTYATILETLRNRAYVNMQGRSLTPSLTGFVVTDLLRQHFPDFTDTGFTAQMENKLDEIARGRKGRVEYLRDYYLGDEGLKATVERKRRAIDPLEAKRARLPGL 132
            RY+EA+ VK LEA+G+GRPSTYATI++T+++R YV  Q + L P+L  F VT LL +HF    DT FTA+ME KLD+IA G  G +EYLR +YLG+EGL+  V  K   IDP  A R   P L
Sbjct:   86 RYTEATLVKALEAEGIGRPSTYATIIDTIQDRGYVFKQRKELVPTLVAFAVTQLLEEHFEKLVDTHFTAEMEQKLDDIAAGAAGWLEYLRTFYLGEEGLQNLVRLKEAQIDPRTASRVNFPDL 208          
BLAST of mRNA_H-elongata_contig120028.1548.1 vs. uniprot
Match: A0A5Q4F9C0_9BACT (DNA topoisomerase 1 n=1 Tax=Balneolaceae bacterium TaxID=2053516 RepID=A0A5Q4F9C0_9BACT)

HSP 1 Score: 137 bits (345), Expect = 5.740e-35
Identity = 65/121 (53.72%), Postives = 88/121 (72.73%), Query Frame = 0
Query:   10 RYSEASFVKELEAQGVGRPSTYATILETLRNRAYVNMQGRSLTPSLTGFVVTDLLRQHFPDFTDTGFTAQMENKLDEIARGRKGRVEYLRDYYLGDEGLKATVERKRRAIDPLEAKRARLP 130
            R++EAS VK+LE  GVGRPSTYATI+ T+  R YV  +G +L P+ T F VT+LL +HFPD  D  FT+QME KLD+IA G++ R++YL+ YY G++GLK  VE++   IDP +A+   LP
Sbjct:  495 RFTEASLVKQLEKDGVGRPSTYATIIGTIMERDYVRKEGNALVPTFTAFAVTELLEKHFPDLVDEQFTSQMEQKLDDIATGKEDRLKYLKSYYEGEKGLKNMVEKQESRIDPQDARHISLP 615          
BLAST of mRNA_H-elongata_contig120028.1548.1 vs. uniprot
Match: A0A6I7NK58_9BACT (DNA topoisomerase I (Fragment) n=1 Tax=Balneolaceae bacterium TaxID=2053516 RepID=A0A6I7NK58_9BACT)

HSP 1 Score: 135 bits (341), Expect = 9.920e-35
Identity = 65/121 (53.72%), Postives = 90/121 (74.38%), Query Frame = 0
Query:   10 RYSEASFVKELEAQGVGRPSTYATILETLRNRAYVNMQGRSLTPSLTGFVVTDLLRQHFPDFTDTGFTAQMENKLDEIARGRKGRVEYLRDYYLGDEGLKATVERKRRAIDPLEAKRARLP 130
            RY+EA+ VKELE +GVGRPSTYATI+ T+++R Y    G++L P+ T F VT LL +HFP   D+ FT+++E+KLD+IA G+   V+YL DYY G++GLKA VE++   IDP +AK  +LP
Sbjct:  242 RYTEATLVKELEKRGVGRPSTYATIISTIQDRGYAKSDGKTLIPTYTAFAVTGLLEEHFPHLVDSEFTSELEHKLDQIAGGKYDPVKYLDDYYKGEDGLKAQVEKQDDIIDPQQAKILKLP 362          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig120028.1548.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDU2_ECTSI5.440e-5779.84DNA topoisomerase (Fragment) n=1 Tax=Ectocarpus si... [more]
A0A6H5KCV2_9PHAE5.310e-5578.99TOP1Ac domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A7S1DGF7_HEMAN9.160e-4358.54Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A2T4XF30_9BACT3.470e-3655.37DNA topoisomerase 1 n=1 Tax=Bacteroidetes bacteriu... [more]
UPI000D5801CA1.030e-3552.59DNA topoisomerase n=1 Tax=Salmonella enterica TaxI... [more]
A0A835Z3T3_9STRA1.760e-3554.93DNA topoisomerase n=1 Tax=Tribonema minus TaxID=30... [more]
A0A0C1YJP1_9CYAN2.310e-3553.23DNA topoisomerase 1 n=4 Tax=Cyanobacteria TaxID=11... [more]
A0A3M1FQF9_9CHLR3.370e-3554.47DNA topoisomerase I (Fragment) n=1 Tax=Caldilineae... [more]
A0A5Q4F9C0_9BACT5.740e-3553.72DNA topoisomerase 1 n=1 Tax=Balneolaceae bacterium... [more]
A0A6I7NK58_9BACT9.920e-3553.72DNA topoisomerase I (Fragment) n=1 Tax=Balneolacea... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013497DNA topoisomerase, type IA, centralPFAMPF01131Topoisom_baccoord: 8..98
e-value: 3.8E-26
score: 92.1
IPR013824DNA topoisomerase, type IA, central region, subdomain 1GENE3D1.10.460.10coord: 1..117
e-value: 4.7E-37
score: 129.2
NoneNo IPR availablePANTHERPTHR42785:SF1DNA TOPOISOMERASE, TYPE IA, COREcoord: 9..118
IPR000380DNA topoisomerase, type IAPANTHERPTHR42785FAMILY NOT NAMEDcoord: 9..118
IPR023405DNA topoisomerase, type IA, core domainSUPERFAMILY56712Prokaryotic type I DNA topoisomerasecoord: 10..102

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig120028contigH-elongata_contig120028:305..1773 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig120028.1548.1mRNA_H-elongata_contig120028.1548.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig120028 305..1773 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig120028.1548.1 ID=prot_H-elongata_contig120028.1548.1|Name=mRNA_H-elongata_contig120028.1548.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=133bp
MKESARSNLRYSEASFVKELEAQGVGRPSTYATILETLRNRAYVNMQGRS
LTPSLTGFVVTDLLRQHFPDFTDTGFTAQMENKLDEIARGRKGRVEYLRD
YYLGDEGLKATVERKRRAIDPLEAKRARLPGLE
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013497Topo_IA_cen
IPR013824Topo_IA_cen_sub1
IPR000380Topo_IA
IPR023405Topo_IA_core_domain