mRNA_H-elongata_contig78013.15472.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig78013.15472.1
Unique NamemRNA_H-elongata_contig78013.15472.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig78013.15472.1 vs. uniprot
Match: D7FP96_ECTSI (R3H domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FP96_ECTSI)

HSP 1 Score: 136 bits (342), Expect = 2.320e-35
Identity = 84/161 (52.17%), Postives = 105/161 (65.22%), Query Frame = 1
Query:    1 DAEERFLLVERRLRDIVMRALRSADLMSFVSGLETLLEAFAQHRKVEATDVSAVLASSLTAPPAVE-----NAGNKATGKSATESTLLVFLGPSPFHRLLLHALCQYWKLRSRSEETGEGRVVRVSTPPT---------SRKAFLLPDTFLVEFVVQARLR 441
            DAEERFLLVERRLRDIV+RALR+  L+ F+ GLETLL  F Q +++  T++ + L S+L +PP VE             ++    TLLV LGPSPFHRLLLHALCQY KLRS+SEET  GR+VRV  P +         S  AF  P+  L EFV++ RL+
Sbjct:  236 DAEERFLLVERRLRDIVVRALRNPALVGFLEGLETLLGEFTQTKQI-LTEMPSALRSALASPPKVEVRKXXXXXXXXXAEAGAGPTLLVPLGPSPFHRLLLHALCQYQKLRSKSEETKRGRIVRVMIPTSXXXXXXXXXSGTAFAAPNAPLTEFVLRTRLQ 395          
BLAST of mRNA_H-elongata_contig78013.15472.1 vs. uniprot
Match: A0A835ZHM7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHM7_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 2.120e-9
Identity = 51/122 (41.80%), Postives = 68/122 (55.74%), Query Frame = 1
Query:    1 DAEERFLLVERRLRDIVMRALRSADLMSFVSGLETLLEAFAQHRKVEATDVSAVLASSLTAPPAVENAGNKATGKSATESTLLVFLGPSPFHRLLLHALCQYWKLRSRSE-ETGEGRVVRVS 363
            DAEERF  + +RLRD+V ++L  A L ++V+ +E  L  F   R +  T     LA +L  P  ++ AG K   +      L V L  SPFHRLLLHA CQY  L S+S+ E G  + V VS
Sbjct:  177 DAEERFARIPKRLRDVVTQSLHGATLRAYVAAVEATLLYFITARALPPTTPDP-LAEALRTPLQLQ-AGPKGGAR------LGVALHDSPFHRLLLHAACQYHGLLSKSDAEQGGVKTVYVS 290          
BLAST of mRNA_H-elongata_contig78013.15472.1 vs. uniprot
Match: K3WHK0_GLOUD (R3H domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WHK0_GLOUD)

HSP 1 Score: 58.9 bits (141), Expect = 2.260e-7
Identity = 45/148 (30.41%), Postives = 81/148 (54.73%), Query Frame = 1
Query:    1 DAEERFLLVERRLRDIVMRALRSADLMSFVSGLETLLEAFAQHRKVEAT-DVSAVLASSLTAPPAVENAGNKATGKSATESTLLVFLGPSPFHRLLLHALCQYWKLRSRSEETGE--GRVVRVSTPPTSRKAFLLPDTFLVEFVVQAR 435
            DAEE FL ++RR R +++R+ +S    SF+  +E ++  F Q R+V +  +V++ L    T P  +  A  K       +  L++ L  S FHRL++H++CQ++ +RSR+E       +++ + +P +   A  L    L EF+ + R
Sbjct:  204 DAEEMFLRIDRRARTLLVRSFQS--FASFIEAVEYVVLHFIQWREVPSEIEVASGLLRVQTHPMELLKASEK-------DVRLVIPLVDSAFHRLIIHSVCQFYGVRSRTEANRRFNTKIMVLKSPKSKFSAEELAKNSLCEFIRETR 342          
BLAST of mRNA_H-elongata_contig78013.15472.1 vs. uniprot
Match: A0A024UVM4_9STRA (R3H-assoc domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UVM4_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 4.160e-7
Identity = 42/136 (30.88%), Postives = 76/136 (55.88%), Query Frame = 1
Query:    1 DAEERFLLVERRLRDIVMRALRSADLMSFVSGLETLLEAFAQHRKVEATDV-SAVLASSLTAPPAVE----------NAGNKATGKSATESTLLVFLGPSPFHRLLLHALCQYWKLRSRS--EETGEGRVVRVSTP 369
            +A++ F  V++R R I++ +  S  +  F+  +E+ +  F Q  +V++ +V S  L S L AP  ++           AG ++     +E+ L+V L  SPFHRLL+HA CQ++ L S+S  + T + +++R+  P
Sbjct:  181 EADDMFTRVDKRARSILLSSFVS--MQEFIEAVESFVVHFVQWNEVQSANVLSPRLTSWLAAPMTIDIVTPMVRDAKAAGTRSKPAKHSETVLVVPLLESPFHRLLIHATCQFYGLNSKSHFDATLKYKIMRIRRP 314          
BLAST of mRNA_H-elongata_contig78013.15472.1 vs. uniprot
Match: A0A8K1FEI2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FEI2_PYTOL)

HSP 1 Score: 56.6 bits (135), Expect = 1.400e-6
Identity = 46/153 (30.07%), Postives = 77/153 (50.33%), Query Frame = 1
Query:    1 DAEERFLLVERRLRDIVMRALRSADLMSFVSGLETLLEAFAQHRK----VEATD-VSAVLASSLTAPPAVENAGNKATGKSATESTLLVFLGPSPFHRLLLHALCQYWKLRSRSEETGE--GRVVRVSTPPTSRKAFLLPDTFLVEFVVQARL 438
            DAEE F  ++RR R ++MR+  S   + F+  +E ++  F Q R+    +E TD +S VLA  +      EN           +  L + L  S FHRL++H++CQ++ +RSR+E       +++ + +P        L    L EF+ + RL
Sbjct:  189 DAEEMFTRIDRRARTLLMRSFNS--FVDFIEAVEHVVLHFVQWRELPSEIEITDGLSRVLAHPIELATVNEN-----------DVRLCIPLSDSAFHRLIVHSVCQFYGVRSRTEANRRFNTKIMVLKSPKKKFSQEQLEKISLCEFIRETRL 328          
BLAST of mRNA_H-elongata_contig78013.15472.1 vs. uniprot
Match: M4BNN1_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BNN1_HYAAE)

HSP 1 Score: 56.2 bits (134), Expect = 1.810e-6
Identity = 45/149 (30.20%), Postives = 80/149 (53.69%), Query Frame = 1
Query:    1 DAEERFLLVERRLRDIVMRALRSADLMSFVSGLETLLEAFAQHRKVEAT-DVSAVLASSLTAPPAVENAGNKATGKSATESTLLVFLGPSPFHRLLLHALCQYWKLRSRSEETGE--GRVVRVSTPPTSRKAFLLPDTFLVEFVVQARL 438
            DAE+ F  V+RR R +++R+L S  L  F+  +E ++  F Q R+V +  +++A L   L  P  +     K       +  L++ L  S FHRL++H++CQ++ +RSR+E       +V+ + +P T   A  L    + +F+ + RL
Sbjct:  136 DAEQMFTRVDRRARTLILRSLTS--LAPFIEAVECVVLHFIQWREVPSELEIAAPLFHMLKHPIELVKVCEK-------DVRLVMPLLDSAFHRLIIHSVCQFYGVRSRTEANRRLNTKVMVLKSPKTRSLADDLAQISMCDFIRETRL 275          
BLAST of mRNA_H-elongata_contig78013.15472.1 vs. uniprot
Match: M4BNN2_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BNN2_HYAAE)

HSP 1 Score: 56.2 bits (134), Expect = 1.990e-6
Identity = 45/149 (30.20%), Postives = 80/149 (53.69%), Query Frame = 1
Query:    1 DAEERFLLVERRLRDIVMRALRSADLMSFVSGLETLLEAFAQHRKVEAT-DVSAVLASSLTAPPAVENAGNKATGKSATESTLLVFLGPSPFHRLLLHALCQYWKLRSRSEETGE--GRVVRVSTPPTSRKAFLLPDTFLVEFVVQARL 438
            DAE+ F  V+RR R +++R+L S  L  F+  +E ++  F Q R+V +  +++A L   L  P  +     K       +  L++ L  S FHRL++H++CQ++ +RSR+E       +V+ + +P T   A  L    + +F+ + RL
Sbjct:  222 DAEQMFTRVDRRARTLILRSLTS--LAPFIEAVECVVLHFIQWREVPSELEIAAPLFHMLKHPIELVKVCEK-------DVRLVMPLLDSAFHRLIIHSVCQFYGVRSRTEANRRLNTKVMVLKSPKTRSLADDLAQISMCDFIRETRL 361          
BLAST of mRNA_H-elongata_contig78013.15472.1 vs. uniprot
Match: H3GQZ4_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GQZ4_PHYRM)

HSP 1 Score: 54.3 bits (129), Expect = 9.030e-6
Identity = 43/149 (28.86%), Postives = 77/149 (51.68%), Query Frame = 1
Query:    1 DAEERFLLVERRLRDIVMRALRSADLMSFVSGLETLLEAFAQHRKVEAT-DVSAVLASSLTAPPAVENAGNKATGKSATESTLLVFLGPSPFHRLLLHALCQYWKLRSRSEETGE--GRVVRVSTPPTSRKAFLLPDTFLVEFVVQARL 438
            DAE+ F  V+RR R +++R+  S     F+  +E ++  F Q R+V +  +V+  L   L  P  +  A  K       +  L++ L  S FHRL++H++CQ++ +RSR+E       +++ + +P     A  L    L EF+ + R+
Sbjct:  187 DAEQMFTRVDRRARTLMLRSFNS--FAPFIEAVEYVVLHFIQWREVPSELEVATPLFRMLKHPIELMRANEK-------DMRLILPLMDSAFHRLIIHSVCQFYGVRSRTEANRRLSTKIMVLKSPKKKLAAVDLVQISLCEFIRETRI 326          
BLAST of mRNA_H-elongata_contig78013.15472.1 vs. uniprot
Match: A0A6G0W807_9STRA (R3H-assoc domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W807_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 1.260e-5
Identity = 38/119 (31.93%), Postives = 61/119 (51.26%), Query Frame = 1
Query:    1 DAEERFLLVERRLRDIVMRALRSADLMSFVSGLETLLEAFAQHRKVEATDVSAVLASSLTAPPAVEN----------AGNKATGKSATESTLLVFLGPSPFHRLLLHALCQYWKLRSRS 327
            +AE  F  V++R R I++    S  +  +V  +E ++  F Q  +   +D+S +L + L AP  VE           A  +       E+ L++ L  SPFHRLL+HA CQ++ L S+S
Sbjct:  182 EAENMFTRVDKRARSILLATFTS--MQEYVEAVELVVVHFVQWNEAP-SDISPMLLNWLAAPMTVETLTPMVREAKAASTRMKPSKHKETVLVLPLADSPFHRLLIHATCQFYGLHSKS 297          
BLAST of mRNA_H-elongata_contig78013.15472.1 vs. uniprot
Match: W4H7Z2_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H7Z2_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 1.320e-5
Identity = 44/136 (32.35%), Postives = 73/136 (53.68%), Query Frame = 1
Query:    1 DAEERFLLVERRLRDIVMRALRSADLMSFVSGLETLLEAFAQHRKV-EATDVSAVLASSLTAP-------PAVEN---AGNKATGKSATESTLLVFLGPSPFHRLLLHALCQYWKLRSRSE--ETGEGRVVRVSTP 369
            +A++ F  V++R R I++ +  S  +  +V  +E ++  F Q  +V  + D S  L + L AP       P V +   AG +A      E+ L+V L  SPFHRLL+HA CQ++ L S+S    T + +++R+  P
Sbjct:   82 EADDMFTRVDKRARSILLASFVS--MQEYVHAVEQVVVHFVQWNQVLPSEDFSPTLVNWLAAPITIDVVTPMVRDSKAAGGRAKPAKHDETVLVVPLLESPFHRLLIHATCQFYGLLSKSHYNPTQKCKLMRIRRP 215          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig78013.15472.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
D7FP96_ECTSI2.320e-3552.17R3H domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A835ZHM7_9STRA2.120e-941.80Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
K3WHK0_GLOUD2.260e-730.41R3H domain-containing protein n=1 Tax=Globisporang... [more]
A0A024UVM4_9STRA4.160e-730.88R3H-assoc domain-containing protein n=1 Tax=Aphano... [more]
A0A8K1FEI2_PYTOL1.400e-630.07Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
M4BNN1_HYAAE1.810e-630.20Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
M4BNN2_HYAAE1.990e-630.20Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
H3GQZ4_PHYRM9.030e-628.86Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A6G0W807_9STRA1.260e-531.93R3H-assoc domain-containing protein n=1 Tax=Aphano... [more]
W4H7Z2_9STRA1.320e-532.35Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig78013contigH-elongata_contig78013:383..1675 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score137.9
Seed ortholog evalue3.8e-30
Seed eggNOG ortholog2880.D7FP96
EggNOG OGs28Q1N@1,2QWQC@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSingle-stranded nucleic acid binding R3H
Ec32 orthologEc-08_000270.1
Exons3
Model size441
Cds size441
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig78013.15472.1prot_H-elongata_contig78013.15472.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig78013 383..1675 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931185.0749753-CDS-H-elongata_contig78013:382..4981622931185.0749753-CDS-H-elongata_contig78013:382..498Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78013 383..498 -
1691679732.8395495-CDS-H-elongata_contig78013:382..4981691679732.8395495-CDS-H-elongata_contig78013:382..498Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78013 383..498 -
1622931185.0953426-CDS-H-elongata_contig78013:915..11141622931185.0953426-CDS-H-elongata_contig78013:915..1114Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78013 916..1114 -
1691679732.849172-CDS-H-elongata_contig78013:915..11141691679732.849172-CDS-H-elongata_contig78013:915..1114Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78013 916..1114 -
1622931185.1169047-CDS-H-elongata_contig78013:1549..16751622931185.1169047-CDS-H-elongata_contig78013:1549..1675Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78013 1550..1675 -
1691679732.8636386-CDS-H-elongata_contig78013:1549..16751691679732.8636386-CDS-H-elongata_contig78013:1549..1675Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78013 1550..1675 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig78013.15472.1

>prot_H-elongata_contig78013.15472.1 ID=prot_H-elongata_contig78013.15472.1|Name=mRNA_H-elongata_contig78013.15472.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=147bp
DAEERFLLVERRLRDIVMRALRSADLMSFVSGLETLLEAFAQHRKVEATD
VSAVLASSLTAPPAVENAGNKATGKSATESTLLVFLGPSPFHRLLLHALC
QYWKLRSRSEETGEGRVVRVSTPPTSRKAFLLPDTFLVEFVVQARLR
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mRNA from alignment at H-elongata_contig78013:383..1675-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig78013.15472.1 ID=mRNA_H-elongata_contig78013.15472.1|Name=mRNA_H-elongata_contig78013.15472.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1293bp|location=Sequence derived from alignment at H-elongata_contig78013:383..1675- (Himanthalia elongata Himel1 dioecious)
GACGCGGAAGAGAGGTTCCTCCTCGTGGAGAGGCGTCTCAGGGACATCGT GATGCGCGCACTCCGAAGCGCTGACCTGATGAGCTTCGTTTCCGGCCTGG AAACCTTGTTGGAGGCCTTTGCTCAGGTGTAGAGAAGAAGGAAGAAATAG AGAAAAATATATATGAAGAAGGGCCGTGGACATAATATCATTGGTTGAGC GTCGGGATATTTACGTAGCTGTGCTGCGTTGTCAAGCACACCAGTGGACG TAATCTTCCGTTCGCGGCTCGGTCGACGTTTCCACCATGCACATGGCCCT TTTTGATCGCTGTGCTGCTTTTTTGGCTTGCCCTTTGGCCCCCCCCCCCC TATCCTCTGCCCCCCCCCGAGGAGGCGTGGTGAACAGTCTAACGGTAAAG GCATGCAAAACTTGAGGAGGCCCTCCTCTCCTCTCCCCTCCCCCCCCTCC CATAAAAAAAACATGCCATACTCCATAGTTAACCTCAGTGTACCTGGTAT TTTGTTATTCTTGTCGCTGCTATTGCTGTTCTATTACTATCACCATTACC ATCGCTCGCAGCATCGGAAGGTGGAAGCGACTGACGTCAGCGCGGTCCTG GCCTCATCGCTGACCGCGCCGCCCGCGGTCGAGAACGCGGGAAACAAGGC AACCGGAAAATCGGCGACAGAGTCCACGCTTCTTGTGTTCCTGGGGCCGT CGCCCTTCCACCGCCTCCTCTTGCACGCTCTGTGCCAGTACTGGAAGCTG CGGTCGAGGAGTGAGTACCAGCGCCTCGCGTTCTTTGCTTGGTCGTGGGA GGGGTATAAAAACCTTATTGGGGCATACCGGTAGAAAAAAAGTTGTGGAG TGAAGTCGATGCGTACTTGTACAGATTTCTTGATACATATTTTTTAGAAA AATAATTAAATTCACTTGTCGAATAGACTCTTAAAAAAATAGCATATTGT ATCTTCCTTGTCATCAATTATGGAGGCATATTCTCTGCCGGGGTATAAAC CCTCCCCCAAACCCTCACTTGTCGAATACCGTATACTTTAAAGAAGGTAG TCTGTTTGCACTCGTCTCCTCCTGGTAGAGTTTTATATATTCTGGAGGCA TATTCCCTGCAGGGACAGCTATCGGTGAGGATCGTGACGGAACCCGGCGC TGCCGACGACGCTTCCGTACATAACAGGCGAGGAGACCGGCGAAGGTCGC GTTGTTCGCGTCAGTACCCCCCCTACCTCTCGGAAGGCGTTCTTGTTGCC AGACACGTTCCTCGTGGAATTCGTAGTACAGGCCAGGCTGAGA
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Coding sequence (CDS) from alignment at H-elongata_contig78013:383..1675-

>mRNA_H-elongata_contig78013.15472.1 ID=mRNA_H-elongata_contig78013.15472.1|Name=mRNA_H-elongata_contig78013.15472.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=882bp|location=Sequence derived from alignment at H-elongata_contig78013:383..1675- (Himanthalia elongata Himel1 dioecious)
GACGCGGAAGAGAGGTTCCTCCTCGTGGAGAGGCGTCTCAGGGACATCGT
GATGCGCGCACTCCGAAGCGCTGACCTGATGAGCTTCGTTTCCGGCCTGG
AAACCTTGTTGGAGGCCTTTGCTCAGGACGCGGAAGAGAGGTTCCTCCTC
GTGGAGAGGCGTCTCAGGGACATCGTGATGCGCGCACTCCGAAGCGCTGA
CCTGATGAGCTTCGTTTCCGGCCTGGAAACCTTGTTGGAGGCCTTTGCTC
AGCATCGGAAGGTGGAAGCGACTGACGTCAGCGCGGTCCTGGCCTCATCG
CTGACCGCGCCGCCCGCGGTCGAGAACGCGGGAAACAAGGCAACCGGAAA
ATCGGCGACAGAGTCCACGCTTCTTGTGTTCCTGGGGCCGTCGCCCTTCC
ACCGCCTCCTCTTGCACGCTCTGTGCCAGTACTGGAAGCTGCGGTCGAGG
ACATCGGAAGGTGGAAGCGACTGACGTCAGCGCGGTCCTGGCCTCATCGC
TGACCGCGCCGCCCGCGGTCGAGAACGCGGGAAACAAGGCAACCGGAAAA
TCGGCGACAGAGTCCACGCTTCTTGTGTTCCTGGGGCCGTCGCCCTTCCA
CCGCCTCCTCTTGCACGCTCTGTGCCAGTACTGGAAGCTGCGGTCGAGGA
GCGAGGAGACCGGCGAAGGTCGCGTTGTTCGCGTCAGTACCCCCCCTACC
TCTCGGAAGGCGTTCTTGTTGCCAGACACGTTCCTCGTGGAATTCGTAGT
ACAGGCCAGGCTGAGAGCGAGGAGACCGGCGAAGGTCGCGTTGTTCGCGT
CAGTACCCCCCCTACCTCTCGGAAGGCGTTCTTGTTGCCAGACACGTTCC
TCGTGGAATTCGTAGTACAGGCCAGGCTGAGA
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