mRNA_H-elongata_contig78013.15472.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig78013.15472.1 vs. uniprot
Match: D7FP96_ECTSI (R3H domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FP96_ECTSI) HSP 1 Score: 136 bits (342), Expect = 2.320e-35 Identity = 84/161 (52.17%), Postives = 105/161 (65.22%), Query Frame = 1
Query: 1 DAEERFLLVERRLRDIVMRALRSADLMSFVSGLETLLEAFAQHRKVEATDVSAVLASSLTAPPAVE-----NAGNKATGKSATESTLLVFLGPSPFHRLLLHALCQYWKLRSRSEETGEGRVVRVSTPPT---------SRKAFLLPDTFLVEFVVQARLR 441
DAEERFLLVERRLRDIV+RALR+ L+ F+ GLETLL F Q +++ T++ + L S+L +PP VE ++ TLLV LGPSPFHRLLLHALCQY KLRS+SEET GR+VRV P + S AF P+ L EFV++ RL+
Sbjct: 236 DAEERFLLVERRLRDIVVRALRNPALVGFLEGLETLLGEFTQTKQI-LTEMPSALRSALASPPKVEVRKXXXXXXXXXAEAGAGPTLLVPLGPSPFHRLLLHALCQYQKLRSKSEETKRGRIVRVMIPTSXXXXXXXXXSGTAFAAPNAPLTEFVLRTRLQ 395
BLAST of mRNA_H-elongata_contig78013.15472.1 vs. uniprot
Match: A0A835ZHM7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHM7_9STRA) HSP 1 Score: 64.7 bits (156), Expect = 2.120e-9 Identity = 51/122 (41.80%), Postives = 68/122 (55.74%), Query Frame = 1
Query: 1 DAEERFLLVERRLRDIVMRALRSADLMSFVSGLETLLEAFAQHRKVEATDVSAVLASSLTAPPAVENAGNKATGKSATESTLLVFLGPSPFHRLLLHALCQYWKLRSRSE-ETGEGRVVRVS 363
DAEERF + +RLRD+V ++L A L ++V+ +E L F R + T LA +L P ++ AG K + L V L SPFHRLLLHA CQY L S+S+ E G + V VS
Sbjct: 177 DAEERFARIPKRLRDVVTQSLHGATLRAYVAAVEATLLYFITARALPPTTPDP-LAEALRTPLQLQ-AGPKGGAR------LGVALHDSPFHRLLLHAACQYHGLLSKSDAEQGGVKTVYVS 290
BLAST of mRNA_H-elongata_contig78013.15472.1 vs. uniprot
Match: K3WHK0_GLOUD (R3H domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WHK0_GLOUD) HSP 1 Score: 58.9 bits (141), Expect = 2.260e-7 Identity = 45/148 (30.41%), Postives = 81/148 (54.73%), Query Frame = 1
Query: 1 DAEERFLLVERRLRDIVMRALRSADLMSFVSGLETLLEAFAQHRKVEAT-DVSAVLASSLTAPPAVENAGNKATGKSATESTLLVFLGPSPFHRLLLHALCQYWKLRSRSEETGE--GRVVRVSTPPTSRKAFLLPDTFLVEFVVQAR 435
DAEE FL ++RR R +++R+ +S SF+ +E ++ F Q R+V + +V++ L T P + A K + L++ L S FHRL++H++CQ++ +RSR+E +++ + +P + A L L EF+ + R
Sbjct: 204 DAEEMFLRIDRRARTLLVRSFQS--FASFIEAVEYVVLHFIQWREVPSEIEVASGLLRVQTHPMELLKASEK-------DVRLVIPLVDSAFHRLIIHSVCQFYGVRSRTEANRRFNTKIMVLKSPKSKFSAEELAKNSLCEFIRETR 342
BLAST of mRNA_H-elongata_contig78013.15472.1 vs. uniprot
Match: A0A024UVM4_9STRA (R3H-assoc domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UVM4_9STRA) HSP 1 Score: 58.2 bits (139), Expect = 4.160e-7 Identity = 42/136 (30.88%), Postives = 76/136 (55.88%), Query Frame = 1
Query: 1 DAEERFLLVERRLRDIVMRALRSADLMSFVSGLETLLEAFAQHRKVEATDV-SAVLASSLTAPPAVE----------NAGNKATGKSATESTLLVFLGPSPFHRLLLHALCQYWKLRSRS--EETGEGRVVRVSTP 369
+A++ F V++R R I++ + S + F+ +E+ + F Q +V++ +V S L S L AP ++ AG ++ +E+ L+V L SPFHRLL+HA CQ++ L S+S + T + +++R+ P
Sbjct: 181 EADDMFTRVDKRARSILLSSFVS--MQEFIEAVESFVVHFVQWNEVQSANVLSPRLTSWLAAPMTIDIVTPMVRDAKAAGTRSKPAKHSETVLVVPLLESPFHRLLIHATCQFYGLNSKSHFDATLKYKIMRIRRP 314
BLAST of mRNA_H-elongata_contig78013.15472.1 vs. uniprot
Match: A0A8K1FEI2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FEI2_PYTOL) HSP 1 Score: 56.6 bits (135), Expect = 1.400e-6 Identity = 46/153 (30.07%), Postives = 77/153 (50.33%), Query Frame = 1
Query: 1 DAEERFLLVERRLRDIVMRALRSADLMSFVSGLETLLEAFAQHRK----VEATD-VSAVLASSLTAPPAVENAGNKATGKSATESTLLVFLGPSPFHRLLLHALCQYWKLRSRSEETGE--GRVVRVSTPPTSRKAFLLPDTFLVEFVVQARL 438
DAEE F ++RR R ++MR+ S + F+ +E ++ F Q R+ +E TD +S VLA + EN + L + L S FHRL++H++CQ++ +RSR+E +++ + +P L L EF+ + RL
Sbjct: 189 DAEEMFTRIDRRARTLLMRSFNS--FVDFIEAVEHVVLHFVQWRELPSEIEITDGLSRVLAHPIELATVNEN-----------DVRLCIPLSDSAFHRLIVHSVCQFYGVRSRTEANRRFNTKIMVLKSPKKKFSQEQLEKISLCEFIRETRL 328
BLAST of mRNA_H-elongata_contig78013.15472.1 vs. uniprot
Match: M4BNN1_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BNN1_HYAAE) HSP 1 Score: 56.2 bits (134), Expect = 1.810e-6 Identity = 45/149 (30.20%), Postives = 80/149 (53.69%), Query Frame = 1
Query: 1 DAEERFLLVERRLRDIVMRALRSADLMSFVSGLETLLEAFAQHRKVEAT-DVSAVLASSLTAPPAVENAGNKATGKSATESTLLVFLGPSPFHRLLLHALCQYWKLRSRSEETGE--GRVVRVSTPPTSRKAFLLPDTFLVEFVVQARL 438
DAE+ F V+RR R +++R+L S L F+ +E ++ F Q R+V + +++A L L P + K + L++ L S FHRL++H++CQ++ +RSR+E +V+ + +P T A L + +F+ + RL
Sbjct: 136 DAEQMFTRVDRRARTLILRSLTS--LAPFIEAVECVVLHFIQWREVPSELEIAAPLFHMLKHPIELVKVCEK-------DVRLVMPLLDSAFHRLIIHSVCQFYGVRSRTEANRRLNTKVMVLKSPKTRSLADDLAQISMCDFIRETRL 275
BLAST of mRNA_H-elongata_contig78013.15472.1 vs. uniprot
Match: M4BNN2_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BNN2_HYAAE) HSP 1 Score: 56.2 bits (134), Expect = 1.990e-6 Identity = 45/149 (30.20%), Postives = 80/149 (53.69%), Query Frame = 1
Query: 1 DAEERFLLVERRLRDIVMRALRSADLMSFVSGLETLLEAFAQHRKVEAT-DVSAVLASSLTAPPAVENAGNKATGKSATESTLLVFLGPSPFHRLLLHALCQYWKLRSRSEETGE--GRVVRVSTPPTSRKAFLLPDTFLVEFVVQARL 438
DAE+ F V+RR R +++R+L S L F+ +E ++ F Q R+V + +++A L L P + K + L++ L S FHRL++H++CQ++ +RSR+E +V+ + +P T A L + +F+ + RL
Sbjct: 222 DAEQMFTRVDRRARTLILRSLTS--LAPFIEAVECVVLHFIQWREVPSELEIAAPLFHMLKHPIELVKVCEK-------DVRLVMPLLDSAFHRLIIHSVCQFYGVRSRTEANRRLNTKVMVLKSPKTRSLADDLAQISMCDFIRETRL 361
BLAST of mRNA_H-elongata_contig78013.15472.1 vs. uniprot
Match: H3GQZ4_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GQZ4_PHYRM) HSP 1 Score: 54.3 bits (129), Expect = 9.030e-6 Identity = 43/149 (28.86%), Postives = 77/149 (51.68%), Query Frame = 1
Query: 1 DAEERFLLVERRLRDIVMRALRSADLMSFVSGLETLLEAFAQHRKVEAT-DVSAVLASSLTAPPAVENAGNKATGKSATESTLLVFLGPSPFHRLLLHALCQYWKLRSRSEETGE--GRVVRVSTPPTSRKAFLLPDTFLVEFVVQARL 438
DAE+ F V+RR R +++R+ S F+ +E ++ F Q R+V + +V+ L L P + A K + L++ L S FHRL++H++CQ++ +RSR+E +++ + +P A L L EF+ + R+
Sbjct: 187 DAEQMFTRVDRRARTLMLRSFNS--FAPFIEAVEYVVLHFIQWREVPSELEVATPLFRMLKHPIELMRANEK-------DMRLILPLMDSAFHRLIIHSVCQFYGVRSRTEANRRLSTKIMVLKSPKKKLAAVDLVQISLCEFIRETRI 326
BLAST of mRNA_H-elongata_contig78013.15472.1 vs. uniprot
Match: A0A6G0W807_9STRA (R3H-assoc domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W807_9STRA) HSP 1 Score: 53.9 bits (128), Expect = 1.260e-5 Identity = 38/119 (31.93%), Postives = 61/119 (51.26%), Query Frame = 1
Query: 1 DAEERFLLVERRLRDIVMRALRSADLMSFVSGLETLLEAFAQHRKVEATDVSAVLASSLTAPPAVEN----------AGNKATGKSATESTLLVFLGPSPFHRLLLHALCQYWKLRSRS 327
+AE F V++R R I++ S + +V +E ++ F Q + +D+S +L + L AP VE A + E+ L++ L SPFHRLL+HA CQ++ L S+S
Sbjct: 182 EAENMFTRVDKRARSILLATFTS--MQEYVEAVELVVVHFVQWNEAP-SDISPMLLNWLAAPMTVETLTPMVREAKAASTRMKPSKHKETVLVLPLADSPFHRLLIHATCQFYGLHSKS 297
BLAST of mRNA_H-elongata_contig78013.15472.1 vs. uniprot
Match: W4H7Z2_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H7Z2_9STRA) HSP 1 Score: 53.5 bits (127), Expect = 1.320e-5 Identity = 44/136 (32.35%), Postives = 73/136 (53.68%), Query Frame = 1
Query: 1 DAEERFLLVERRLRDIVMRALRSADLMSFVSGLETLLEAFAQHRKV-EATDVSAVLASSLTAP-------PAVEN---AGNKATGKSATESTLLVFLGPSPFHRLLLHALCQYWKLRSRSE--ETGEGRVVRVSTP 369
+A++ F V++R R I++ + S + +V +E ++ F Q +V + D S L + L AP P V + AG +A E+ L+V L SPFHRLL+HA CQ++ L S+S T + +++R+ P
Sbjct: 82 EADDMFTRVDKRARSILLASFVS--MQEYVHAVEQVVVHFVQWNQVLPSEDFSPTLVNWLAAPITIDVVTPMVRDSKAAGGRAKPAKHDETVLVVPLLESPFHRLLIHATCQFYGLLSKSHYNPTQKCKLMRIRRP 215 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig78013.15472.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 15
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig78013.15472.1 >prot_H-elongata_contig78013.15472.1 ID=prot_H-elongata_contig78013.15472.1|Name=mRNA_H-elongata_contig78013.15472.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=147bp DAEERFLLVERRLRDIVMRALRSADLMSFVSGLETLLEAFAQHRKVEATDback to top mRNA from alignment at H-elongata_contig78013:383..1675- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig78013.15472.1 ID=mRNA_H-elongata_contig78013.15472.1|Name=mRNA_H-elongata_contig78013.15472.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1293bp|location=Sequence derived from alignment at H-elongata_contig78013:383..1675- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig78013:383..1675- >mRNA_H-elongata_contig78013.15472.1 ID=mRNA_H-elongata_contig78013.15472.1|Name=mRNA_H-elongata_contig78013.15472.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=882bp|location=Sequence derived from alignment at H-elongata_contig78013:383..1675- (Himanthalia elongata Himel1 dioecious)back to top |