mRNA_H-elongata_contig7801.15471.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig7801.15471.1 vs. uniprot
Match: A0A6H5KCV1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCV1_9PHAE) HSP 1 Score: 132 bits (333), Expect = 2.600e-33 Identity = 79/202 (39.11%), Postives = 120/202 (59.41%), Query Frame = 1
Query: 1 GVGLAVRESIARTLGPDGIMPEHISSRLLKMRVIFKHRAVTSFIVGYALTETAATCH------KSKSWKELRSTVTEVSAIAHLILMMDANARTGGRGEGGGLGDVRDLGPYGRDTLNHNGSQLLACAAEHKLTIVNTFFSMPKRGGNSDEFTYEGPKESHRWCMGYILVRQHDHRLVRNITVHPK--MKSDHRLVSASIRL 582
GVG+A++E++ ++G +G E IS RL+K+R+ +F+VGYA TET T K W L + + EV + HL+++MDANARTG R +G D + +G YGRD +N+NG +LL A++++L++ NT+ PK GG F K ++C+ +IL+RQ D R VRN++V SDH LV ++RL
Sbjct: 84 GVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDDNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDG--CCDAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYSRTPK-GGVQQTFQSSN-KGKEKYCLDFILMRQTDRRFVRNVSVKRVDFKDSDHNLVLTTVRL 281
BLAST of mRNA_H-elongata_contig7801.15471.1 vs. uniprot
Match: A0A6H5KBZ6_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBZ6_9PHAE) HSP 1 Score: 130 bits (326), Expect = 5.190e-33 Identity = 79/202 (39.11%), Postives = 118/202 (58.42%), Query Frame = 1
Query: 1 GVGLAVRESIARTLGPDGIMPEHISSRLLKMRVIFKHRAVTSFIVGYALTETAATCH------KSKSWKELRSTVTEVSAIAHLILMMDANARTGGRGEGGGLGDVRDLGPYGRDTLNHNGSQLLACAAEHKLTIVNTFFSMPKRGGNSDEFTYEGPKESHRWCMGYILVRQHDHRLVRNITVHPK--MKSDHRLVSASIRL 582
GVG+A++E++ ++G +G E IS RL+K+R+ +F+VGYA TET T K W L + + EV + HL+++MDANARTG R GG D + LG YGRD +N+NG +L A++++ ++ NT+F PK G + KE +R + +IL+RQ D R VRN++V SDH LV ++RL
Sbjct: 52 GVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRR--GGCCDAKVLGAYGRDIMNNNGERLFGLASDNQFSLANTYFRTPKGGVQHTFQSSNKGKEKYR--LDFILMRQADRRFVRNVSVKRVDFKDSDHNLVLTTVRL 249
BLAST of mRNA_H-elongata_contig7801.15471.1 vs. uniprot
Match: A0A6H5KC90_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC90_9PHAE) HSP 1 Score: 132 bits (332), Expect = 3.070e-32 Identity = 81/201 (40.30%), Postives = 119/201 (59.20%), Query Frame = 1
Query: 1 GVGLAVRESIARTLGPDGIMPEHISSRLLKMRVIFKHRAVTSFIVGYALTETAATCH------KSKSWKELRSTVTEVSAIAHLILMMDANARTGGRGEGGGLGDVRDLGPYGRDTLNHNGSQLLACAAEHKLTIVNTFFSMPKRGGNSDEFTYEGPKESHRWCMGYILVRQHDHRLVRNITVHPK--MKSDHRLVSASIR 579
GVG+A++E++ ++G G E IS RL+K+R+ +F+VGYA TETA K W L + + EV + HL+++MDANARTG R +G D + +G YGRD +N+NG +LL AA+++L+++NT+F PK G + KE HR + +IL+RQ D RLVRN +V SDH LV ++R
Sbjct: 52 GVGIAIKETMWDSVGEGGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETARNTAGGDVNAKDSFWTALDAEIREVHSRDHLVVLMDANARTGRRRDG--CCDAKIMGAYGRDIMNNNGERLLGLAADNRLSLINTYFRTPKGGVQHTFQSSNKGKEKHR--LDFILMRQTDRRLVRNASVKRVDFKDSDHNLVHTTVR 248
BLAST of mRNA_H-elongata_contig7801.15471.1 vs. uniprot
Match: A0A6H5JQH5_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQH5_9PHAE) HSP 1 Score: 132 bits (332), Expect = 3.110e-32 Identity = 81/201 (40.30%), Postives = 119/201 (59.20%), Query Frame = 1
Query: 1 GVGLAVRESIARTLGPDGIMPEHISSRLLKMRVIFKHRAVTSFIVGYALTETAATCH------KSKSWKELRSTVTEVSAIAHLILMMDANARTGGRGEGGGLGDVRDLGPYGRDTLNHNGSQLLACAAEHKLTIVNTFFSMPKRGGNSDEFTYEGPKESHRWCMGYILVRQHDHRLVRNITVHPK--MKSDHRLVSASIR 579
GVG+A++E++ ++G G E IS RL+K+R+ +F+VGYA TETA K W L + + EV + HL+++MDANARTG R +G D + +G YGRD +N+NG +LL AA+++L+++NT+F PK G + KE HR + +IL+RQ D RLVRN +V SDH LV ++R
Sbjct: 164 GVGIAIKETMWDSVGEGGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETARNTAGGDVNAKDSFWTALDAEIREVHSRDHLVVLMDANARTGRRRDG--CCDAKIMGAYGRDIMNNNGERLLGLAADNRLSLINTYFRTPKGGVQHTFQSSNKGKEKHR--LDFILMRQTDRRLVRNASVKRVDFKDSDHNLVHTTVR 360
BLAST of mRNA_H-elongata_contig7801.15471.1 vs. uniprot
Match: A0A6H5L7A7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7A7_9PHAE) HSP 1 Score: 131 bits (329), Expect = 7.430e-32 Identity = 79/202 (39.11%), Postives = 120/202 (59.41%), Query Frame = 1
Query: 1 GVGLAVRESIARTLGPDGIMPEHISSRLLKMRVIFKHRAVTSFIVGYALTETAATCH------KSKSWKELRSTVTEVSAIAHLILMMDANARTGGRGEGGGLGDVRDLGPYGRDTLNHNGSQLLACAAEHKLTIVNTFFSMPKRGGNSDEFTYEGPKESHRWCMGYILVRQHDHRLVRNITVHPK--MKSDHRLVSASIRL 582
GVG+A++E++ ++G +G E IS RL+K+R+ +F+VGYA TET T K W L + + EV + HL+++MDANARTG R +G D + +G YGRD +N+NG +LL A++++L++ NT+F PK G + KE +R + +IL+RQ D R VRN++V SDH LV ++RL
Sbjct: 52 GVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDG--CCDAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFRTPKGGVQHTFQSSNKGKEKYR--LDFILMRQTDRRFVRNVSVKRVDFKDSDHNLVLTTVRL 249
BLAST of mRNA_H-elongata_contig7801.15471.1 vs. uniprot
Match: A0A6H5KSV0_9PHAE (Endo/exonuclease/phosphatase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSV0_9PHAE) HSP 1 Score: 129 bits (324), Expect = 7.780e-32 Identity = 77/202 (38.12%), Postives = 120/202 (59.41%), Query Frame = 1
Query: 1 GVGLAVRESIARTLGPDGIMPEHISSRLLKMRVIFKHRAVTSFIVGYALTETAATCH------KSKSWKELRSTVTEVSAIAHLILMMDANARTGGRGEGGGLGDVRDLGPYGRDTLNHNGSQLLACAAEHKLTIVNTFFSMPKRGGNSDEFTYEGPKESHRWCMGYILVRQHDHRLVRNITVHPK--MKSDHRLVSASIRL 582
GVG+A++E++ ++G +G E IS RL+K+R+ +F++GYA TET T K W L + + EV + HL+++MDANARTG R +G D + +G YGRD +N+NG +LL A++++L++ NT+F PK G + KE +R + +IL+RQ D R VR+++V SDH LV ++RL
Sbjct: 52 GVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVMGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDG--CCDAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFRTPKGGAQHTFQSSNTGKEKYR--LDFILMRQTDRRFVRDVSVKRVDFKDSDHNLVLTTVRL 249
BLAST of mRNA_H-elongata_contig7801.15471.1 vs. uniprot
Match: A0A6H5K3Q1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3Q1_9PHAE) HSP 1 Score: 130 bits (327), Expect = 7.950e-32 Identity = 78/202 (38.61%), Postives = 120/202 (59.41%), Query Frame = 1
Query: 1 GVGLAVRESIARTLGPDGIMPEHISSRLLKMRVIFKHRAVTSFIVGYALTETAATCH------KSKSWKELRSTVTEVSAIAHLILMMDANARTGGRGEGGGLGDVRDLGPYGRDTLNHNGSQLLACAAEHKLTIVNTFFSMPKRGGNSDEFTYEGPKESHRWCMGYILVRQHDHRLVRNITVHPK--MKSDHRLVSASIRL 582
GVG+A++E++ ++G +G E IS RL+K+R+ +F+VGYA TET T K W L + + EV + HL+++MDANARTG R +G D + +G YGRD +N+NG +LL A++++L++ NT+F PK G + KE +R + +I +RQ D R VRN++V SDH+LV ++RL
Sbjct: 249 GVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFLVGYAPTETVRTTEGCDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRKG--CCDAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFRTPKGGVQHTFQSSNKGKEKYR--LDFIFMRQADRRFVRNVSVKRVDFKDSDHKLVLTTVRL 446
BLAST of mRNA_H-elongata_contig7801.15471.1 vs. uniprot
Match: A0A6H5K259_9PHAE (Endo/exonuclease/phosphatase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K259_9PHAE) HSP 1 Score: 126 bits (317), Expect = 1.430e-31 Identity = 78/202 (38.61%), Postives = 117/202 (57.92%), Query Frame = 1
Query: 1 GVGLAVRESIARTLGPDGIMPEHISSRLLKMRVIFKHRAVTSFIVGYALTETAATCH------KSKSWKELRSTVTEVSAIAHLILMMDANARTGGRGEGGGLGDVRDLGPYGRDTLNHNGSQLLACAAEHKLTIVNTFFSMPKRGGNSDEFTYEGPKESHRWCMGYILVRQHDHRLVRNITVHPK--MKSDHRLVSASIRL 582
GVG+A++E++ ++G G E I+ RL+K+R+ +F+VGYA TET T K W L + EV + HL+++MDANARTG R +G D + +G YGRD +N+NG +LL A+ ++L++ NT+F PK G + KE +R + +IL+RQ D R VRN++V SDH LV ++RL
Sbjct: 52 GVGIAIKEAMWESVGEKGRTVECINPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDGEIREVHSRDHLVVLMDANARTGRRRDG--CCDAKIMGAYGRDIMNNNGERLLGLASGNQLSLTNTYFRTPKGGVQHTFQSSNKGKEKYR--LDFILMRQADRRFVRNVSVKRVDFKDSDHNLVLTTVRL 249
BLAST of mRNA_H-elongata_contig7801.15471.1 vs. uniprot
Match: A0A6H5JVN7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVN7_9PHAE) HSP 1 Score: 130 bits (326), Expect = 1.890e-31 Identity = 79/202 (39.11%), Postives = 119/202 (58.91%), Query Frame = 1
Query: 1 GVGLAVRESIARTLGPDGIMPEHISSRLLKMRVIFKHRAVTSFIVGYALTETAATCH------KSKSWKELRSTVTEVSAIAHLILMMDANARTGGRGEGGGLGDVRDLGPYGRDTLNHNGSQLLACAAEHKLTIVNTFFSMPKRGGNSDEFTYEGPKESHRWCMGYILVRQHDHRLVRNITVHPK--MKSDHRLVSASIRL 582
GVG+A++E++ T+G +G E IS RL+K+R+ +F+VGYA TET K W L + + EV + HL+++MDANARTG R +G D + +G YGRD +N+NG +LL A++++L++ NT+F PK GG F K ++ + +IL+RQ D R VRN++V SDH LV ++RL
Sbjct: 229 GVGIAIKEAMWETVGEEGRKVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRITAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDG--CCDAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFRTPK-GGVQHTFQCSN-KGKEKYRLDFILMRQTDRRFVRNVSVKRVDFKDSDHNLVLTTVRL 426
BLAST of mRNA_H-elongata_contig7801.15471.1 vs. uniprot
Match: A0A6H5KV75_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV75_9PHAE) HSP 1 Score: 127 bits (320), Expect = 2.520e-31 Identity = 77/202 (38.12%), Postives = 118/202 (58.42%), Query Frame = 1
Query: 1 GVGLAVRESIARTLGPDGIMPEHISSRLLKMRVIFKHRAVTSFIVGYALTETAATCH------KSKSWKELRSTVTEVSAIAHLILMMDANARTGGRGEGGGLGDVRDLGPYGRDTLNHNGSQLLACAAEHKLTIVNTFFSMPKRGGNSDEFTYEGPKESHRWCMGYILVRQHDHRLVRNITVHPK--MKSDHRLVSASIRL 582
GVG+ ++E++ ++G +G E I RL+K+R+ +F+VGYA TET T K W L + + EV + HL+++MDANARTG R +G D + +G YGRD +N+NG +LL A++++L++ NT+F PK G + KE +R + +IL+RQ D R VRN++V SDH LV ++RL
Sbjct: 155 GVGIVIKEAMWESVGEEGRTVECICPRLMKVRLQIGRTCGVAFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDG--CCDAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFRTPKGGVQHTFQSSNKGKEKYR--LDFILMRQADRRFVRNVSVKRVDFKDSDHNLVLTTVRL 352 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7801.15471.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig7801.15471.1 >prot_H-elongata_contig7801.15471.1 ID=prot_H-elongata_contig7801.15471.1|Name=mRNA_H-elongata_contig7801.15471.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=194bp GVGLAVRESIARTLGPDGIMPEHISSRLLKMRVIFKHRAVTSFIVGYALTback to top mRNA from alignment at H-elongata_contig7801:160..741- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig7801.15471.1 ID=mRNA_H-elongata_contig7801.15471.1|Name=mRNA_H-elongata_contig7801.15471.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=582bp|location=Sequence derived from alignment at H-elongata_contig7801:160..741- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig7801:160..741- >mRNA_H-elongata_contig7801.15471.1 ID=mRNA_H-elongata_contig7801.15471.1|Name=mRNA_H-elongata_contig7801.15471.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1164bp|location=Sequence derived from alignment at H-elongata_contig7801:160..741- (Himanthalia elongata Himel1 dioecious)back to top |