prot_H-elongata_contig78004.15470.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig78004.15470.1
Unique Nameprot_H-elongata_contig78004.15470.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length78
Homology
BLAST of mRNA_H-elongata_contig78004.15470.1 vs. uniprot
Match: A0A6H5JBV6_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBV6_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 1.350e-16
Identity = 35/77 (45.45%), Postives = 51/77 (66.23%), Query Frame = 0
Query:    2 LWHRRLGHLNKRTLDFIQRRDGNGITFDGTLADCDVCAVGKIHKLAHPKKAENADIKAPFQLVYADLMGPFAPASHG 78
            LWHRR+GH+N ++LD +++   NG+     + DC  CA+GK  +  HPK+A   D+K PFQLV+ D +GPF P + G
Sbjct:  528 LWHRRMGHINSKSLDILRKAPNNGVDHTEDVKDCGPCALGKSTQQPHPKEA-TYDVKRPFQLVFVDTLGPFTPTALG 603          
BLAST of mRNA_H-elongata_contig78004.15470.1 vs. uniprot
Match: A0A6H5KBU1_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBU1_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 6.410e-16
Identity = 37/74 (50.00%), Postives = 51/74 (68.92%), Query Frame = 0
Query:    1 ELWHRRLGHLNKRTLDFIQRRDGNGITFDGTLADCDVCAVGKIHKLAHPKKAENADIKAPFQLVYADLMGPFAP 74
            +LWHRRLGH++ R+LD +++ D NG+ + G +  CDVCA+GK  +  HPKKA   D+   FQ V  DLMGP +P
Sbjct:   38 DLWHRRLGHIDSRSLDVLRKIDDNGVDYTGPMETCDVCAIGKSSQRPHPKKA-TYDVSRHFQ-VSTDLMGPISP 109          
BLAST of mRNA_H-elongata_contig78004.15470.1 vs. uniprot
Match: A0A6H5KNH5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNH5_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 1.200e-15
Identity = 33/78 (42.31%), Postives = 51/78 (65.38%), Query Frame = 0
Query:    1 ELWHRRLGHLNKRTLDFIQRRDGNGITFDGTLADCDVCAVGKIHKLAHPKKAENADIKAPFQLVYADLMGPFAPASHG 78
            +LWHRR+GH+N ++LD ++++  +GI + G + DC  C +GK  +  HPK A    +  PFQLV+ D +GPF P + G
Sbjct:   45 DLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYG-VSTPFQLVFVDTLGPFTPTALG 121          
BLAST of mRNA_H-elongata_contig78004.15470.1 vs. uniprot
Match: A0A6H5KJN3_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJN3_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 1.200e-15
Identity = 33/78 (42.31%), Postives = 51/78 (65.38%), Query Frame = 0
Query:    1 ELWHRRLGHLNKRTLDFIQRRDGNGITFDGTLADCDVCAVGKIHKLAHPKKAENADIKAPFQLVYADLMGPFAPASHG 78
            +LWHRR+GH+N ++LD ++++  +GI + G + DC  C +GK  +  HPK A    +  PFQLV+ D +GPF P + G
Sbjct:  574 DLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYG-VSTPFQLVFVDTLGPFTPTALG 650          
BLAST of mRNA_H-elongata_contig78004.15470.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 1.210e-15
Identity = 33/78 (42.31%), Postives = 51/78 (65.38%), Query Frame = 0
Query:    1 ELWHRRLGHLNKRTLDFIQRRDGNGITFDGTLADCDVCAVGKIHKLAHPKKAENADIKAPFQLVYADLMGPFAPASHG 78
            +LWHRR+GH+N ++LD ++++  +GI + G + DC  C +GK  +  HPK A    +  PFQLV+ D +GPF P + G
Sbjct:  696 DLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYG-VSTPFQLVFVDTLGPFTPTALG 772          
BLAST of mRNA_H-elongata_contig78004.15470.1 vs. uniprot
Match: A0A6H5J842_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J842_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 1.210e-15
Identity = 33/78 (42.31%), Postives = 51/78 (65.38%), Query Frame = 0
Query:    1 ELWHRRLGHLNKRTLDFIQRRDGNGITFDGTLADCDVCAVGKIHKLAHPKKAENADIKAPFQLVYADLMGPFAPASHG 78
            +LWHRR+GH+N ++LD ++++  +GI + G + DC  C +GK  +  HPK A    +  PFQLV+ D +GPF P + G
Sbjct:  574 DLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYG-VSTPFQLVFVDTLGPFTPTALG 650          
BLAST of mRNA_H-elongata_contig78004.15470.1 vs. uniprot
Match: A0A6H5JKW9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKW9_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 2.710e-14
Identity = 32/76 (42.11%), Postives = 50/76 (65.79%), Query Frame = 0
Query:    1 ELWHRRLGHLNKRTLDFIQRRDGNGITFDGTLADCDVCAVGKIHKLAHPKKAENADIKAPFQLVYADLMGPFAPAS 76
            +LWHRR+GH+N ++LD +++   NG+ + G + DC VC +GK  +  HPK+A    ++ PFQ V  D +GPF P +
Sbjct:  642 DLWHRRMGHINGKSLDVLRKEPVNGVDYTGDVKDCSVCPLGKSAQQPHPKQATYGVLR-PFQHVSVDTLGPFTPTA 716          
BLAST of mRNA_H-elongata_contig78004.15470.1 vs. uniprot
Match: A0A6H5JYB5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYB5_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 2.710e-14
Identity = 32/78 (41.03%), Postives = 49/78 (62.82%), Query Frame = 0
Query:    1 ELWHRRLGHLNKRTLDFIQRRDGNGITFDGTLADCDVCAVGKIHKLAHPKKAENADIKAPFQLVYADLMGPFAPASHG 78
            +LWHRR+GH+N ++LD ++++  +GI + G + DC  C +GK  +  HPK A    +  PFQLV+ D  GPF   + G
Sbjct:  479 DLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYG-VSTPFQLVFVDTFGPFTSTTLG 555          
BLAST of mRNA_H-elongata_contig78004.15470.1 vs. uniprot
Match: A0A6H5KXM1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXM1_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 9.360e-14
Identity = 32/78 (41.03%), Postives = 50/78 (64.10%), Query Frame = 0
Query:    1 ELWHRRLGHLNKRTLDFIQRRDGNGITFDGTLADCDVCAVGKIHKLAHPKKAENADIKAPFQLVYADLMGPFAPASHG 78
            +LWHRR+GH+N ++LD +++   NG+ + G + DC VC +GK  +  HPK+     ++ PFQ V  D +GPF P + G
Sbjct:  287 DLWHRRMGHINGKSLDVLRKEPVNGVDYTGNVNDCCVCPLGKSAQQPHPKQVTYGVLR-PFQHVSVDTLGPFTPTALG 363          
BLAST of mRNA_H-elongata_contig78004.15470.1 vs. uniprot
Match: A0A6H5JT61_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT61_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 2.380e-13
Identity = 32/75 (42.67%), Postives = 48/75 (64.00%), Query Frame = 0
Query:    4 HRRLGHLNKRTLDFIQRRDGNGITFDGTLADCDVCAVGKIHKLAHPKKAENADIKAPFQLVYADLMGPFAPASHG 78
            HRRLGHLN R++  +++++ N + F  ++  CD+CA+ K  +LAHPKK    +  AP  LVY D+MG   P + G
Sbjct:  110 HRRLGHLNFRSMKLLRKKEENEVDFSDSMTPCDICAISKSTQLAHPKKTSR-ETTAPMLLVYTDIMGKTTPLAKG 183          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig78004.15470.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JBV6_9PHAE1.350e-1645.45Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5KBU1_9PHAE6.410e-1650.00CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KNH5_9PHAE1.200e-1542.31Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KJN3_9PHAE1.200e-1542.31Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5KJH6_9PHAE1.210e-1542.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J842_9PHAE1.210e-1542.31Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5JKW9_9PHAE2.710e-1442.11Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JYB5_9PHAE2.710e-1441.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KXM1_9PHAE9.360e-1441.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JT61_9PHAE2.380e-1342.67Integrase catalytic domain-containing protein n=1 ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025724GAG-pre-integrase domainPFAMPF13976gag_pre-integrscoord: 1..42
e-value: 1.9E-7
score: 30.8

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig78004contigH-elongata_contig78004:644..877 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig78004.15470.1mRNA_H-elongata_contig78004.15470.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig78004 644..877 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig78004.15470.1 ID=prot_H-elongata_contig78004.15470.1|Name=mRNA_H-elongata_contig78004.15470.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=78bp
ELWHRRLGHLNKRTLDFIQRRDGNGITFDGTLADCDVCAVGKIHKLAHPK
KAENADIKAPFQLVYADLMGPFAPASHG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR025724GAG-pre-integrase_dom