mRNA_H-elongata_contig77904.15466.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig77904.15466.1
Unique NamemRNA_H-elongata_contig77904.15466.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig77904.15466.1 vs. uniprot
Match: D8LKW3_ECTSI (cGMP-dependent protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKW3_ECTSI)

HSP 1 Score: 301 bits (770), Expect = 1.650e-92
Identity = 164/301 (54.49%), Postives = 205/301 (68.11%), Query Frame = 1
Query:    1 KAKGEGVSNREIFDKISRAQVAIPGNNNITVI-------NRKCRAGSHQHFRKRASTLSNNFLASF-RRKSALGVVAHDTKKHRRNQIFEDGFDFTSAGAREEMAKLKGG-----EVFQDGNEKLILEAMETLFFVGEDCTEQMNALIDTMEKLALPSGEWLMREGDPGDAMYVIKSGKLDVYVGSSLTRHVERGNAVGELALLYHTPRSASVKAVEDCELFCLQRNKFRDMLALSVSSSLVQRLAWMQAIRELEPLDQESASRLAGAFSTMHLRQGEVAVAEGGTIDRCFMIEHGTVEAR 864
            KAKG GV+NREIFDK+SRA+VA+P + +           NR+ RAGSHQH + + S++S   +    RR S LG+ +HD KKHRR+QIFEDGFDFT A  R+EMAK +GG     EVFQDGN+KLILEA+   FF+GE+ T QMN+LIDTMEK +  SGEWLM+EG+PGDAMYVIK+GKL+VYVG +LTRHV  G AVGELALLYHTPRSASVK                                        +PLD+++ASRLAGAF+T+ LR+GE    EGGT+DRC++IE+G+VE +
Sbjct:   27 KAKGAGVTNREIFDKMSRARVALPDDGDDDKARQPKKEPNRQIRAGSHQHIQHQGSSMSAKLVPDNPRRNSVLGITSHDNKKHRRDQIFEDGFDFTLADTRKEMAKQQGGFDKTKEVFQDGNDKLILEALVNFFFIGEESTNQMNSLIDTMEKSSCRSGEWLMQEGEPGDAMYVIKTGKLEVYVGGTLTRHVGPGCAVGELALLYHTPRSASVK----------------------------------------DPLDKQAASRLAGAFTTIQLREGETVSTEGGTVDRCYLIEYGSVEVK 287          
BLAST of mRNA_H-elongata_contig77904.15466.1 vs. uniprot
Match: A0A835YKT1_9STRA (cGMP-dependent protein kinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKT1_9STRA)

HSP 1 Score: 141 bits (356), Expect = 3.470e-34
Identity = 88/212 (41.51%), Postives = 122/212 (57.55%), Query Frame = 1
Query:  217 KKHRRNQIFEDGFDFTSAGA--REEMAKLKGGEVFQDGNEKLILEAMETLFFVGEDCTEQ------MNALIDTMEKLALPSGEWLMREGDPGDAMYVIKSGKLDVYVGSSLTRHVERGNAVGELALLYHTPRSASVKAVEDCE-LFCLQRNKFRDMLALSVSSSLVQRLAWMQAIRELEPLDQESASRLAGAFSTMHLRQGEVAVAEGGTID 825
            K+ RR +IFE G DF       R  ++  K   VFQ  N  LI  AM  +FF G D  +Q       + L+D+ E +A  +GEWLM+EG+ GD MY++  G L V VG    R + RG+AVGELAL+Y  PRSASV+A      L+ L R+KFR++ A++ S +LV R+  + A   LE +D+ + S L GA   + L+ GE  V E  TI+
Sbjct:  117 KRARRIRIFERGVDFADEARLNRLHISLDKSKAVFQPENRALIQAAMGKVFFTGGDSPQQGLQGAAFDRLLDSFEMVACAAGEWLMKEGEEGDNMYIVAEGSLQVLVGGEKVRDIGRGDAVGELALIYSAPRSASVRAAPAAAVLWSLCRDKFREVQAVTSSEALVARVEMLSAAPALEVVDRYALSLLGGAAEGVTLQAGETMVVEKDTIE 328          
BLAST of mRNA_H-elongata_contig77904.15466.1 vs. uniprot
Match: A0A7S2UWP0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UWP0_9STRA)

HSP 1 Score: 135 bits (340), Expect = 3.570e-34
Identity = 68/157 (43.31%), Postives = 106/157 (67.52%), Query Frame = 1
Query:  388 QMNALIDTMEKLALPSGEWLMREGDPGDAMYVIKSGKLDVYVGSSLTRHVERGNAVGELALLYHTPRSASVKAVEDCELFCLQRNKFRDMLALSVSSSLVQRLAWMQAIRELEPLDQESASRLAGAFSTMHLRQGEVAVAEGGTIDRCFMIEHGTVE 858
            +M+ ++D++    L +GE+LMR+G+ G+ MY+I+SG L+V + + L R +  G+AVGELALL++ PRSASVKA   C L+ L+R  FR++ AL+ S+ LVQR+AW+     L+ LD+    +LA +  T+ +R GE+ + EG   DR  ++E G VE
Sbjct:    1 RMDLVLDSLRCEHLAAGEYLMRQGEEGNKMYIIQSGSLEVDIDNKLVRVIGAGDAVGELALLFNAPRSASVKAQAPCVLWSLKRETFREVQALASSAQLVQRVAWLLQAPSLQGLDKVDLCKLASSLRTIPMRNGEIIINEGQRTDRLVLVESGVVE 157          
BLAST of mRNA_H-elongata_contig77904.15466.1 vs. uniprot
Match: A0A7S3USL8_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3USL8_HETAK)

HSP 1 Score: 121 bits (303), Expect = 5.500e-29
Identity = 61/132 (46.21%), Postives = 87/132 (65.91%), Query Frame = 1
Query:  460 DPGDAMYVIKSGKLDVYVGSSLTRHVERGNAVGELALLYHTPRSASVKAVEDCELFCLQRNKFRDMLALSVSSSLVQRLAWMQAIRELEPLDQESASRLAGAFSTMHLRQGEVAVAEGGTIDRCFMIEHGTV 855
            + G  MYVI+SG +++ +  +L R +  G+AVGELALLY+ PRSASV+A E C ++ L R  FR++ AL+ S  L+QR+AW+  +  L  LD+    +LA +  T  LR GEV V EG   DRCF++E+G V
Sbjct:    1 EEGSKMYVIQSGTMEITIDGNLIRMLSAGDAVGELALLYNAPRSASVRAAEPCVVWSLARETFREVQALASSVQLLQRVAWLLDVPTLRRLDKLDLCKLASSLRTAPLRHGEVLVTEGQATDRCFLLENGVV 132          
BLAST of mRNA_H-elongata_contig77904.15466.1 vs. uniprot
Match: A0A835YLH2_9STRA (cGMP-dependent protein kinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLH2_9STRA)

HSP 1 Score: 120 bits (300), Expect = 9.710e-27
Identity = 87/269 (32.34%), Postives = 127/269 (47.21%), Query Frame = 1
Query:  187 SALGVVAHDTKKHRRNQIFEDGFDFTSA---GAREEMAKLKGGEVFQDGNEKLILEA-----------------METLFFVGEDCT-------EQMNALIDTMEKLALPSGEWLMREG--------------DPGDAMYVIKSGKLDVYVGSSLTRHVERGNAVGELALLYHTPRSASVKAVEDCE----LFCLQRNKFRDMLALSVSSSLVQRLAWMQAIRELEPLDQESASRLAGAFSTMHLRQGEVAVAEGGTIDRCFMIEHGTVE 858
            ++ G  A   +++RR QIF+ GFDF+ A   GA + M      + F   N  +I  A                 M  +FF G D         +  + L+   E+     GEWLMRE               + G+ MYV+  G L+ +VG    R V RG+A GELALLY  PRSASV+A  D      L+ L+R+ FR++ A++  +++  RL  + A   LEP+D  + S LAG    + L  G  A  E   I RC +++ G +E
Sbjct:  192 ASAGATADGARRNRRAQIFQSGFDFSDAQRMGALQ-MEVDTSKDTFLPENRAIIQAATARECGDGARVRGGNAAMARVFFSGADAAGGARLQGQAFDRLLGAFERRECAPGEWLMREXXXXXXXXXXXXXXXEVGEEMYVVADGALEAFVGGDKVRDVRRGDAAGELALLYGAPRSASVRAPPDAPAAAVLWSLRRDAFREVQAVTSGAAMSARLEALAAAPALEPVDVYALSLLAGLADGVALEAGATAAVEHEVITRCILVDSGQLE 459          
BLAST of mRNA_H-elongata_contig77904.15466.1 vs. uniprot
Match: A0A482RXL7_9ARCH (Cyclic nucleotide-binding domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RXL7_9ARCH)

HSP 1 Score: 113 bits (282), Expect = 2.040e-25
Identity = 63/192 (32.81%), Postives = 100/192 (52.08%), Query Frame = 1
Query:  283 EMAKLKGGEVFQDGNEKLILEAMETLFFV---GEDCTEQMNALIDTMEKLALPSGEWLMREGDPGDAMYVIKSGKLDVYVGSSLTRHVERGNAVGELALLYHTPRSASVKAVEDCELFCLQRNKFRDMLALSVSSSLVQRLAWMQAIRELEPLDQESASRLAGAFSTMHLRQGEVAVAEGGTIDRCFMIEHG 849
            +++ L  G+   D    L+  A+   FF+    E+   +M  LI  M++     G  L+ EG+ G  +YV++SG LDV +  S  R + RG+ +GELALLY  PRSA+V+    C L+ L R  F+ + A+S +++ +QR  W+ A  EL  L     SRL      +H   G+  ++E     +  +IE G
Sbjct:   55 DISTLLVGDTMDDTTRSLVTNALSGFFFLQSSAEEANPKMELLIKGMKREEFDEGYTLITEGESGSKLYVVESGTLDVTINGSPIREMNRGSMLGELALLYDAPRSATVQCRTKCVLWSLSREIFKRVQAISATANQIQRARWLIASPELATLSAIDLSRLVATLQVVHFNPGDKMISEKDLTTQIILIEKG 246          
BLAST of mRNA_H-elongata_contig77904.15466.1 vs. uniprot
Match: A0A7S2AR94_9STRA (cGMP-dependent protein kinase (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AR94_9STRA)

HSP 1 Score: 115 bits (287), Expect = 4.170e-25
Identity = 64/175 (36.57%), Postives = 100/175 (57.14%), Query Frame = 1
Query:  334 LILEAMETLFFVGEDCTEQMNALIDTMEKLALPSGEWLMREGDPGDAMYVIKSGKLDVYVGSSLTRHVERGNAVGELALLYHTPRSASVKAVEDCELFCLQRNKFRDMLALSVSSSLVQRLAWMQAIRELEPLDQESASRLAGAFSTMHLRQGEVAVAEGGTIDRCFMIEHGTVE 858
            LI + +E L       TE M+ ++  ++K+ L   + LMR+GD GDAMY+++ GKL + VG       + G+ VGELAL+++ PR+A+V+A E C+L+ L R +F ++    V  S      +++  R L  L+  + SRLA A     +R GEV   EG  I  CF++E G +E
Sbjct:   34 LISKPLEFLISDKSFFTETMDEILSKIKKVELDRDDVLMRQGDAGDAMYILEQGKLRIIVGDKCVAFKKAGDVVGELALIFNEPRTATVEAEEPCKLWALSRVEFAELQKKKVVGSKDLICRYLREARCLNKLNDPTISRLAVAMRKRKIRDGEVLFREGDDIGECFLVEKGQLE 208          
BLAST of mRNA_H-elongata_contig77904.15466.1 vs. uniprot
Match: A0A482RZV9_9ARCH (Cyclic nucleotide-binding domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RZV9_9ARCH)

HSP 1 Score: 106 bits (265), Expect = 2.200e-23
Identity = 72/223 (32.29%), Postives = 115/223 (51.57%), Query Frame = 1
Query:  202 VAHDTKKHRRNQIFEDGFDFTSAGARE--EMAKLKGGEVF--QDGNEKLILEAMETLFFVGEDCTEQMNALIDTMEKLALPSGEWLMREGDPGDAMYVIKSGKLDVYVGSSLTRHVERGNAVGELALLYHTPRSASVKAVEDCELFCLQRNKFRDMLALSVSSSLVQRLAWMQAIRELEPLDQESASRLAGAFSTMHLRQGEVAVAEGGTIDRCFMIEHGTVE 858
            VA   + +RR QIF    +F+    R+    AK +  + F  Q   +  + EA+      GE   E +N +ID M      + E ++R+G+ GD  + +++G    +V +        G   GELAL+Y++PR+ASV A   C+L+ L    FR +LA + SS +V R  +++    L+PL  E  S+LAGA  T++   G+  V +G   D  F+IE G V+
Sbjct:   75 VAAPAQLNRRVQIFNASDNFSPDEKRQLPVFAKPEAAKSFLRQAIGQHYLFEAL------GE---EDINRIIDCMRPTFASADEVVIRQGELGDLFFCLETGSATAFVDNKEVMKYSAGGCFGELALIYNSPRAASVVATAACKLWTLDLRTFRYILATTSSSKMVVRCEFLKKCSFLDPLTNEQISKLAGALDTVNFEDGDYIVRQGDVADSFFIIEEGAVK 288          
BLAST of mRNA_H-elongata_contig77904.15466.1 vs. uniprot
Match: A0A7S1UDS0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UDS0_9STRA)

HSP 1 Score: 102 bits (255), Expect = 5.400e-22
Identity = 51/165 (30.91%), Postives = 100/165 (60.61%), Query Frame = 1
Query:  364 FVGEDCTEQMNALIDTMEKLALPSGEWLMREGDPGDAMYVIKSGKLDVYVGSSLTRHVERGNAVGELALLYHTPRSASVKAVEDCELFCLQRNKFRDMLALSVSSSLVQRLAWMQAIRELEPLDQESASRLAGAFSTMHLRQGEVAVAEGGTIDRCFMIEHGTVE 858
            F   + +E+M+ +++ M+ LA  +GE ++R+G+ G+  +V+ +G  +V+V         RG + GELAL+Y +PR+A+++A +  +L+ L    FR +LA + S+ ++ R  +++ +R LEPL  +  +++AGA       + E  V +G + D+ F+I+ G V+
Sbjct:    2 FTELENSERMD-VVNAMQPLAKTAGETIIRQGEAGNEFFVLATGHCEVFVDGDRVGEYVRGGSFGELALMYDSPRAATIRATQTSKLYTLDLRTFRRILATTSSARMMNRCEFLKKVRLLEPLSNDQITKIAGALQEESFAENEYIVRQGESGDKFFIIQDGRVQ 165          
BLAST of mRNA_H-elongata_contig77904.15466.1 vs. uniprot
Match: A0A094ZXP3_SCHHA (cGMP-dependent protein kinase n=1 Tax=Schistosoma haematobium TaxID=6185 RepID=A0A094ZXP3_SCHHA)

HSP 1 Score: 105 bits (263), Expect = 5.960e-22
Identity = 59/182 (32.42%), Postives = 100/182 (54.95%), Query Frame = 1
Query:  310 VFQDGNEKLILEAMETLFFVGEDCTEQMNALIDTMEKLALPSGEWLMREGDPGDAMYVIKSGKLDVYVGSSLTRHVERGNAVGELALLYHTPRSASVKAVEDCELFCLQRNKFRDMLALSVSSSLVQRLAWMQAIRELEPLDQESASRLAGAFSTMHLRQGEVAVAEGGTIDRCFMIEHGTV 855
            VFQ+ +  LI +A+    F+      Q+  ++  M K  +P G +++REG+PGDA+YV+  G L+VY  ++L   +E G A GELALLY+  R+ASV+AV +   + L R  F+ ++  S      + + +++++  L+ L  E   +LA     +    GE  + EG   +  F+I+ G V
Sbjct:   19 VFQNRSSSLIRDAISNNTFLKHLEQSQIEEIVACMYKKQIPHGCFIIREGEPGDALYVVSDGILEVYKDNALLGRMEVGRAFGELALLYNCKRTASVRAVTNASAWTLDRRTFQQIMMSSCIHRQQENMKFLKSVPALKDLSSEKMKKLADVLEPVFYETGEYIIREGELGETFFIIKSGKV 200          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig77904.15466.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LKW3_ECTSI1.650e-9254.49cGMP-dependent protein kinase n=1 Tax=Ectocarpus s... [more]
A0A835YKT1_9STRA3.470e-3441.51cGMP-dependent protein kinase n=1 Tax=Tribonema mi... [more]
A0A7S2UWP0_9STRA3.570e-3443.31Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S3USL8_HETAK5.500e-2946.21Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A835YLH2_9STRA9.710e-2732.34cGMP-dependent protein kinase n=1 Tax=Tribonema mi... [more]
A0A482RXL7_9ARCH2.040e-2532.81Cyclic nucleotide-binding domain-containing protei... [more]
A0A7S2AR94_9STRA4.170e-2536.57cGMP-dependent protein kinase (Fragment) n=1 Tax=D... [more]
A0A482RZV9_9ARCH2.200e-2332.29Cyclic nucleotide-binding domain-containing protei... [more]
A0A7S1UDS0_9STRA5.400e-2230.91Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A094ZXP3_SCHHA5.960e-2232.42cGMP-dependent protein kinase n=1 Tax=Schistosoma ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig77904contigH-elongata_contig77904:164..2866 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score301.6
Seed ortholog evalue3.9e-79
Seed eggNOG ortholog2880.D8LKW3
KEGG koko:K07376
KEGG Pathwayko04022,ko04270,ko04540,ko04611,ko04713,ko04714,ko04730,ko04740,ko04923,ko04970,map04022,map04270,map04540,map04611,map04713,map04714,map04730,map04740,map04923,map04970
KEGG ModuleM00694
EggNOG free text desc.cGMP-dependent protein kinase activity
EggNOG OGsCOG0664@1,KOG0614@2759,KOG0616@1,KOG0616@2759
Ec32 ortholog descriptioncAMP-dependent protein kinase catalytic subunit (PKA)
Ec32 orthologEc-11_005800.2
EC2.7.11.12
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01001
Hectar predicted targeting categoryother localisation
Exons6
Model size864
Cds size864
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig77904.15466.1prot_H-elongata_contig77904.15466.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig77904 164..2866 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931184.5398273-CDS-H-elongata_contig77904:163..3051622931184.5398273-CDS-H-elongata_contig77904:163..305Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77904 164..305 +
1691679732.6686943-CDS-H-elongata_contig77904:163..3051691679732.6686943-CDS-H-elongata_contig77904:163..305Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77904 164..305 +
1622931184.5610168-CDS-H-elongata_contig77904:941..11051622931184.5610168-CDS-H-elongata_contig77904:941..1105Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77904 942..1105 +
1691679732.6793437-CDS-H-elongata_contig77904:941..11051691679732.6793437-CDS-H-elongata_contig77904:941..1105Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77904 942..1105 +
1622931184.573109-CDS-H-elongata_contig77904:1291..13751622931184.573109-CDS-H-elongata_contig77904:1291..1375Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77904 1292..1375 +
1691679732.6871793-CDS-H-elongata_contig77904:1291..13751691679732.6871793-CDS-H-elongata_contig77904:1291..1375Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77904 1292..1375 +
1622931184.5881608-CDS-H-elongata_contig77904:2024..22371622931184.5881608-CDS-H-elongata_contig77904:2024..2237Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77904 2025..2237 +
1691679732.6982133-CDS-H-elongata_contig77904:2024..22371691679732.6982133-CDS-H-elongata_contig77904:2024..2237Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77904 2025..2237 +
1622931184.6206234-CDS-H-elongata_contig77904:2398..25181622931184.6206234-CDS-H-elongata_contig77904:2398..2518Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77904 2399..2518 +
1691679732.7117498-CDS-H-elongata_contig77904:2398..25181691679732.7117498-CDS-H-elongata_contig77904:2398..2518Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77904 2399..2518 +
1622931184.670413-CDS-H-elongata_contig77904:2725..28661622931184.670413-CDS-H-elongata_contig77904:2725..2866Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77904 2726..2866 +
1691679732.721939-CDS-H-elongata_contig77904:2725..28661691679732.721939-CDS-H-elongata_contig77904:2725..2866Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77904 2726..2866 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig77904.15466.1

>prot_H-elongata_contig77904.15466.1 ID=prot_H-elongata_contig77904.15466.1|Name=mRNA_H-elongata_contig77904.15466.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=288bp
KAKGEGVSNREIFDKISRAQVAIPGNNNITVINRKCRAGSHQHFRKRAST
LSNNFLASFRRKSALGVVAHDTKKHRRNQIFEDGFDFTSAGAREEMAKLK
GGEVFQDGNEKLILEAMETLFFVGEDCTEQMNALIDTMEKLALPSGEWLM
REGDPGDAMYVIKSGKLDVYVGSSLTRHVERGNAVGELALLYHTPRSASV
KAVEDCELFCLQRNKFRDMLALSVSSSLVQRLAWMQAIRELEPLDQESAS
RLAGAFSTMHLRQGEVAVAEGGTIDRCFMIEHGTVEAR
back to top

mRNA from alignment at H-elongata_contig77904:164..2866+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig77904.15466.1 ID=mRNA_H-elongata_contig77904.15466.1|Name=mRNA_H-elongata_contig77904.15466.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2703bp|location=Sequence derived from alignment at H-elongata_contig77904:164..2866+ (Himanthalia elongata Himel1 dioecious)
AAGGCCAAGGGCGAAGGTGTCTCCAACCGTGAGATTTTTGACAAGATATC CAGGGCTCAGGTCGCTATCCCAGGCAACAATAATATCACAGTTATTAACC GCAAGTGCCGCGCGGGTAGTCATCAACATTTTCGGAAAAGAGGTGTGTGA AGTCCCCTGTTCTCGCCTCATCCGTTGACAGAGGAAGCTTGGTCGATTCA CGAACTTGCAGTAAGAGCATTTGCAGGGTTTTACGGCTTTATCTAAGCTA TATTATTAGCTGTAAGTTCTTGGCTCTCTTTGAGTTTTTTATGTATGGTT TGGGTTGGGGTTAGCACTATCGTTGGGGGTCGGAGTGGTAAAAAAAAAAG TCGTCTCAAGCAGAAACATTAATAGCAAATAGAGAAAAACACGATGCGTT GACTGTTGAGTTTCAATTTCGCGCCCACTGTTGTTGCTACTTAGTTGATT TCGAGATCTCGCCTAGGTTGACCCACCCCGCATTTTAAACCATCATTCCC CCTAAGTGGATACGAGATCTCAACTATCCGAACGCGCTGTGCTGATTTGA TGCCTTCAAGAACTCGAAGAGACGAGTGTGAAAAGTTCGCCAGCATTTGC CTTCGTAACTCGAACTCAGGTTCAGCATACTATAATAATTAACTATCGCT TCTGCTAACGACCTTCTGTCGTCGTCCACGCATCGCATTCGCTCCTATAT CGTTATACTTAATGTGTATTTCCCGGGGTGTTTGTGCCGTGGGCGCTGCT GCTGCTGCTGCTGCCGCTGCCACGGCAGCCTCAACGCTGTCCAATAACTT TCTTGCCTCCTTTCGAAGGAAATCGGCATTGGGTGTCGTGGCCCATGACA CCAAGAAGCACCGTCGGAACCAGATTTTCGAGGATGGTTTCGACTTCACC TCGGCCGGCGCCAGGGAGGAAATGGCCAAGCTGAAGGGGGGAGTCGACAG GACCAAGGCGAGGGATTTAGAGCGCTTGATTACATATATATAGAGAGAGA TGGAGGGGGGTCTACAAAATGACCACGCGGTCAGGAATAGCGTACGGAGC CCGACAGGGTCAGATTCACAAGGGCTGGCTACATGCAACCACGTTCCCCC TTGCCTCCTTTCTGTGTGTTTTGTGCAGGAGGTTTTCCAAGACGGGAACG AAAAGTTAATCCTTGAGGCCATGGAGACTTTGTTTTTCGTGGGGGAAGAC TGTACTGAACAGGTATACATGCTGGATACGGAGGACTCGGTTACCTTGTC CGCTTAATCTAAACACTGGTAATATATGGCCCTAGCCAACCCGAATGCGC GAGAGATAGATCACAGCGCCTAGCAGTGGGGTATAACCCCCCCCCGAGGG GGGCGGTGTTCCCTATCGATTTATATCACAAGTGCACATTTCTCGAAACC TCTGAAGGAGATCCTCTGAAATCGCAGTCATTGGGGTGAGAACAATCCAA CGAAAGGGGAGGGGAACTTAAGTTCCCCTGGTTTGTATATGGAAAGGGAA AAACCACGTCTCTTTCCGAGGATACAGTCGTCGTGTTCTCTGTCGTAGAA GAGGGGGTGGATACGATTCGTCCCCCGAAGCATATATATATATATATAGC CCCTTTCTGAATTGAGGATGTTTAAGCCGCCACCACTATCGTTGCACTAG TCGTGACTACTGGCCTACTGGCTTCGAAAGAGGGAGGGGTTCCTTCCAGA GGTTTGTTAGAGAGCTAGGGCACTCAGTTACCTATATGGTACTGTAGGTA TCGTACAACGCAGTACAGTACCTTAACTTAATATCTCTATCTCAGAAGAT CCTTTTTTTCACGGATGGGCGGCAATAATGCGGTACCGTACTCTCCGAAA ACCTCGACCAGATGAACGCCCTGATCGACACTATGGAAAAATTGGCGCTT CCATCCGGGGAGTGGCTGATGCGGGAGGGGGACCCCGGCGACGCCATGTA TGTCATCAAGTCGGGCAAACTCGATGTGTACGTCGGCAGTAGCTTGACGC GGCATGTTGAAAGAGGGAACGCGGTAGGCGAGCTTGCGCTGCTGTACCAT ACGCCCCGAAGCGCTAGCGTTAAGGTGAGGTGCCTGTACCGCAAGGAGTT TTCGAATCCAACCAACGCGGCGATGTCTTTGGACACGAACTCATGGCCTC TCGGGTAACTGCCAGTACGCTGTCCTTCCGAAACGCCCCCACTCCACCTC ACCCCACCCTATCGCCGTGCGCTGTGACGCTGCAGGCAGTGGAAGACTGC GAGCTGTTCTGCCTCCAGAGGAACAAATTTCGCGATATGCTGGCACTCTC TGTCAGCTCTTCGCTTGTCCAGCGCCTCGCGTGGATGCAGGCTATTCGAG AGCTGGTGAGGGACGGTACAACGGGGGCCGTAGAGGGGAGGGCTACGATT ATTCCGCGTGTGTAATAACTAATAGTTTTGGAGACGGAAATCGATCCCTA AGCTAGCATGCGGAGTATGCTGTACGATCCTTTAATAAAGGTTTGCGCCA GCGCTGACTTCCTGAAGGCACGTTTTTGGTTGTATGACATATCTTCGTTC ACCACCATATAGGAGCCTCTTGACCAGGAATCCGCATCCCGGCTTGCTGG GGCATTCAGCACAATGCATCTCAGGCAGGGTGAGGTGGCGGTGGCAGAGG GAGGCACGATCGATCGCTGCTTTATGATCGAGCATGGAACTGTCGAGGCA AGG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig77904:164..2866+

>mRNA_H-elongata_contig77904.15466.1 ID=mRNA_H-elongata_contig77904.15466.1|Name=mRNA_H-elongata_contig77904.15466.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1728bp|location=Sequence derived from alignment at H-elongata_contig77904:164..2866+ (Himanthalia elongata Himel1 dioecious)
AAGGCCAAGGGCGAAGGTGTCTCCAACCGTGAGATTTTTGACAAGATATC
CAGGGCTCAGGTCGCTATCCCAGGCAACAATAATATCACAGTTATTAACC
GCAAGTGCCGCGCGGGTAGTCATCAACATTTTCGGAAAAGAGAAGGCCAA
GGGCGAAGGTGTCTCCAACCGTGAGATTTTTGACAAGATATCCAGGGCTC
AGGTCGCTATCCCAGGCAACAATAATATCACAGTTATTAACCGCAAGTGC
CGCGCGGGTAGTCATCAACATTTTCGGAAAAGAGCCTCAACGCTGTCCAA
TAACTTTCTTGCCTCCTTTCGAAGGAAATCGGCATTGGGTGTCGTGGCCC
ATGACACCAAGAAGCACCGTCGGAACCAGATTTTCGAGGATGGTTTCGAC
TTCACCTCGGCCGGCGCCAGGGAGGAAATGGCCAAGCTGAAGGGGGGACC
TCAACGCTGTCCAATAACTTTCTTGCCTCCTTTCGAAGGAAATCGGCATT
GGGTGTCGTGGCCCATGACACCAAGAAGCACCGTCGGAACCAGATTTTCG
AGGATGGTTTCGACTTCACCTCGGCCGGCGCCAGGGAGGAAATGGCCAAG
CTGAAGGGGGGAGAGGTTTTCCAAGACGGGAACGAAAAGTTAATCCTTGA
GGCCATGGAGACTTTGTTTTTCGTGGGGGAAGACTGTACTGAACAGGAGG
TTTTCCAAGACGGGAACGAAAAGTTAATCCTTGAGGCCATGGAGACTTTG
TTTTTCGTGGGGGAAGACTGTACTGAACAGATGAACGCCCTGATCGACAC
TATGGAAAAATTGGCGCTTCCATCCGGGGAGTGGCTGATGCGGGAGGGGG
ACCCCGGCGACGCCATGTATGTCATCAAGTCGGGCAAACTCGATGTGTAC
GTCGGCAGTAGCTTGACGCGGCATGTTGAAAGAGGGAACGCGGTAGGCGA
GCTTGCGCTGCTGTACCATACGCCCCGAAGCGCTAGCGTTAAGATGAACG
CCCTGATCGACACTATGGAAAAATTGGCGCTTCCATCCGGGGAGTGGCTG
ATGCGGGAGGGGGACCCCGGCGACGCCATGTATGTCATCAAGTCGGGCAA
ACTCGATGTGTACGTCGGCAGTAGCTTGACGCGGCATGTTGAAAGAGGGA
ACGCGGTAGGCGAGCTTGCGCTGCTGTACCATACGCCCCGAAGCGCTAGC
GTTAAGGCAGTGGAAGACTGCGAGCTGTTCTGCCTCCAGAGGAACAAATT
TCGCGATATGCTGGCACTCTCTGTCAGCTCTTCGCTTGTCCAGCGCCTCG
CGTGGATGCAGGCTATTCGAGAGCTGGCAGTGGAAGACTGCGAGCTGTTC
TGCCTCCAGAGGAACAAATTTCGCGATATGCTGGCACTCTCTGTCAGCTC
TTCGCTTGTCCAGCGCCTCGCGTGGATGCAGGCTATTCGAGAGCTGGAGC
CTCTTGACCAGGAATCCGCATCCCGGCTTGCTGGGGCATTCAGCACAATG
CATCTCAGGCAGGGTGAGGTGGCGGTGGCAGAGGGAGGCACGATCGATCG
CTGCTTTATGATCGAGCATGGAACTGTCGAGGCAAGGGAGCCTCTTGACC
AGGAATCCGCATCCCGGCTTGCTGGGGCATTCAGCACAATGCATCTCAGG
CAGGGTGAGGTGGCGGTGGCAGAGGGAGGCACGATCGATCGCTGCTTTAT
GATCGAGCATGGAACTGTCGAGGCAAGG
back to top