mRNA_H-elongata_contig779.15465.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig779.15465.1
Unique NamemRNA_H-elongata_contig779.15465.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig779.15465.1 vs. uniprot
Match: D8LE22_ECTSI (Probable glycine-sarcosine methyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE22_ECTSI)

HSP 1 Score: 251 bits (640), Expect = 9.440e-77
Identity = 130/229 (56.77%), Postives = 163/229 (71.18%), Query Frame = 3 
Query:   90 EVWGGITIHIGRYDLLKGKDANLEGKARIKRASELTTDMLLRKAFPNDGPSPSG----YTIMDMGSSYGHLARKVAKSYGCRVVCIELSATATIENVKLTAAAGLSEKIIIPGERSFFDTQMPASSMDIVVSQDTFLHASTEHDKAIKEAARVLKPGGIFVFSDLMSSDTVDKAKLAEMYKNLEIVGLASPASYKRWGDEFGLEFVEYDEYSSNFATHYASLVEVIKDI 764
            + WG   IHIGRYDLL   +  +  + RIKRA+ L+T  LL K FP   PSP G     T+MDMGS++G  AR  AK +GC VVCI++S      N KL+AAAGLS+KIIIPGERS+FDT+MPA+SMD V+SQD F HASTEH +AIKEAARVLKPGG+  FSD M SD  D  KL E+Y+++ I  LASP  Y+ WG+ +GLE VE+D+ +SNF+ HY  LV+VI  +
Sbjct:    2 QAWGE-DIHIGRYDLLSTDELKMGPRERIKRATALSTRGLLGKVFP---PSPGGETTIMTVMDMGSAHGSTARTAAKEHGCNVVCIDISRGFNAVNAKLSAAAGLSDKIIIPGERSYFDTEMPAASMDAVLSQDAFGHASTEHHRAIKEAARVLKPGGVMAFSDFMQSDDADPTKLGEVYQHIGISRLASPGLYEEWGNAYGLEPVEFDDRTSNFSVHYQHLVDVIASL 226
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BLAST of mRNA_H-elongata_contig779.15465.1 vs. uniprot
Match: A0A6H5KC33_9PHAE (Methyltransf_11 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KC33_9PHAE)

HSP 1 Score: 236 bits (603), Expect = 2.030e-67
Identity = 121/293 (41.30%), Postives = 174/293 (59.39%), Query Frame = 3 
Query:    6 LSTKGEVGAIEATAQGYYDNPNAINVHKEVWGGITIHIGRYDLLKGKDANLEGKARIKRASELTTDMLLRKAFP---------NDGPSPSGYTIMDMGSSYGHLARKVAKSYGCRVVCIELSATATIENVKLTAAAGLSEKIIIPGERSFFDTQMPASSMDIVVSQDTFLHASTEHDKAIKEAARVLKPGGIFVFSDLMSSDTVDKAKLAEMYKNLEIVGLASPASYKRWGDEFGLEFVEYDEYSSNFATHYASLVEVIKDIGRGVPLP*LDDSAVQCLREGCQAGPLVVRAD 857
            ++T  ++  I + A+ YYD+ NA N +++VWGG  IH+G Y   +G+D  L+G  RI +AS L T+ LL + FP            P  S  T+MDMGS YG  AR  AK  GC+VVCI +++     N  +T  AGL +K+I+PGE+SFF+T MP +S D+V SQD  LHA +E  +A+ EAARVLKPGG  VF+D+M S   D   L E+Y+ + +  +A+P SY +WG   GLEFVE+ + + N A HY ++ EV+  + R   L  ++D  +  +  G  A       D
Sbjct:    6 VATSDKIDEISSVAKDYYDSDNAFNFYRQVWGGEHIHVGLYTRFEGEDVELKGVDRISKASSLCTEELLSRCFPAVATVTSNGEAAPPASECTMMDMGSGYGGTARAAAKKLGCKVVCINVASRENEINTAITKDAGLQDKVIVPGEKSFFETGMPDASCDVVTSQDALLHAGSERHRALGEAARVLKPGGRMVFTDIMQSKEADPKDLQEVYQRIHLDDMATPESYAKWGKAHGLEFVEFVDMTDNLALHYGAVREVL--MSRRGNLDGVEDEFIDNMARGLDAWTSAAGRD 296
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BLAST of mRNA_H-elongata_contig779.15465.1 vs. uniprot
Match: A0A835YZA4_9STRA (Putative sarcosine-dimethylglycine methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZA4_9STRA)

HSP 1 Score: 218 bits (556), Expect = 5.980e-64
Identity = 113/243 (46.50%), Postives = 159/243 (65.43%), Query Frame = 3 
Query:   30 AIEATAQGYYDNPNAINVHKEVWGGITIHIGRYDLLKGKDANLEGKARIKRASELTTDMLLRKAFPNDGPSPSGYTIMDMGSSYGHLARKVAKSYGCRVVCIELSATATIENVKLTAAAGLSEKIIIPGERSFFDTQMPASSMDIVVSQDTFLHASTEHDKAIKEAARVLKPGGIFVFSDLMSSDTVDKAKLAEMYKNLEIVGLASPASYKRWGDEFGLEFVEYDEYSSNFATHYASLVEVIK 758
            AI   AQ YYD+ +A N +K+VWGG  IH+G YD  +  D+ ++   RIK ASEL+   L   A P D  S     +MDMGS+YG  AR  AK+YGC V CI++S      N   TAA GL++K++IPGERSFF+T  PA + D VVSQD+ LHA +E  +AI+EAARVLKPGG  VF+D+M S+  + A+L  +Y+ + +  + SPASY+ W +  GL+ V +++ +SN A HY ++  V++
Sbjct:   12 AINDVAQQYYDSEDAFNFYKQVWGGSFIHVGLYDDPQVTDS-MDPMERIKLASELSAKRLFATAEPLDSSSK----VMDMGSAYGGNARLCAKTYGCTVTCIDISCKENEVNRSTTAAEGLADKVLIPGERSFFETGEPAGAYDAVVSQDSLLHAGSERCRAIEEAARVLKPGGCLVFTDIMQSNDANTAELDAVYRRIHLEDMGSPASYQAWAERCGLKLVGFEDRTSNLAAHYGAVKGVLE 249
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BLAST of mRNA_H-elongata_contig779.15465.1 vs. uniprot
Match: D7G5Z7_ECTSI (Putative sarcosine-dimethylglycine methyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5Z7_ECTSI)

HSP 1 Score: 215 bits (547), Expect = 3.890e-59
Identity = 107/253 (42.29%), Postives = 158/253 (62.45%), Query Frame = 3 
Query:   30 AIEATAQGYYDNPNAINVHKEVWGGITIHIGRYDLLKGKDANLEGKARIKRASELTTDMLLRKAFP-----------NDGPSPSGYTIMDMGSSYGHLARKVAKSYGCRVVCIELSATATIENVKLTAAAGLSEKIIIPGERSFFDTQMPASSMDIVVSQDTFLHASTEHDKAIKEAARVLKPGGIFVFSDLMSSDTVDKAKLAEMYKNLEIVGLASPASYKRWGDEFGLEFVEYDEYSSNFATHYASLVEVI 755
            AI ATA+G+Y++ NA N + +VWGG  IH+G Y  L  ++A L    RIK+AS L  + LL + FP           N  P  S  T++DMGS YG  AR  AK+ GC+V CI +++     N  L+ AAG+ + +IIPGE+S+FDT +P +  ++V SQD  LHA +E  +A+ EAAR+LKPGG  VF+D+M ++  D   L E+Y+ + +  L +P SY +W + +GL FVE+ + + +  THY S+ EV+
Sbjct:   18 AISATAEGWYNSDNAFNFYFKVWGGEHIHVGLYSKLNAEEAKLPVLDRIKKASILNAEELLARCFPASANGTNGTNGNGAPHTSESTMVDMGSGYGGSARLAAKTLGCKVYCINVTSRENDVNRALSKAAGIEDLVIIPGEKSYFDTGLPDACCEVVTSQDALLHAGSERHRAVGEAARLLKPGGRMVFNDVMQTNHADPKDLQEVYERVRLQDLGTPKSYAKWAESYGLTFVEFSDRTPDMKTHYESVKEVL 270
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BLAST of mRNA_H-elongata_contig779.15465.1 vs. uniprot
Match: D7G7W9_ECTSI (Putative sarcosine-dimethylglycine methyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7W9_ECTSI)

HSP 1 Score: 209 bits (532), Expect = 1.030e-58
Identity = 107/253 (42.29%), Postives = 154/253 (60.87%), Query Frame = 3 
Query:   90 EVWGGITIHIGRYDLLKGKDANLEGKARIKRASELTTDMLLRKAFP-----NDGPSPSGYTIMDMGSSYGHLARKVAKSYGCRVVCIELSATATIENVKLTAAAGLSEKIIIPGERSFFDTQMPASSMDIVVSQDTFLHASTEHDKAIKEAARVLKPGGIFVFSDLMSSDTVDKAKLAEMYKNLEIVGLASPASYKRWGDEFGLEFVEYDEYSSNFATHYASLVEVIKDIGRGVPLP*LDDSAVQCLREGCQA 833
            EVWGG  IHIG +  L+G+   LEG  RIK+AS L+T+ +L + FP     N  P  +  T++D+G  YG  AR  AK  GC+VVCI +S      NV +T  AGL +K+I+PGE+SFF+T +P +S D+V SQD  LH+  E  +++ EAARVLKPGG  VFSD+M     D   L ++Y    +  +++P  Y +WG   GLEFVE+ + + N ATHY S+ +V+  + R   L  ++D  +  +  G +A
Sbjct:   11 EVWGGEHIHIGLHSKLEGEHVKLEGVERIKKASSLSTEEILSRCFPSGTNGNGAPPSAECTMVDLGCGYGGTARVAAKKLGCKVVCINVSKRENETNVAMTKEAGLQDKVIVPGEKSFFETGLPDASCDVVASQDALLHSGPERHRSMAEAARVLKPGGRMVFSDIMQFKETDPKDLQDVYNRCHLEDMSTPEEYIKWGKVHGLEFVEFVDMAENLATHYGSVRDVL--VSRRGNLEGVEDEFIDNMVRGIEA 261
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BLAST of mRNA_H-elongata_contig779.15465.1 vs. uniprot
Match: A0A6H5L6E6_9PHAE (Methyltransf_11 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6E6_9PHAE)

HSP 1 Score: 202 bits (515), Expect = 1.030e-56
Identity = 103/252 (40.87%), Postives = 153/252 (60.71%), Query Frame = 3 
Query:   30 AIEATAQGYYDNPNAINVHKEVWGGITIHIGRYDLLKGKDANLEGKARIKRASELTTDMLLRKAFP-----------NDGPSPSGYTIMDMGSSYGHLARKVAKSYGCRVV---CIELSATATIENVKLTAAAGLSEKIIIPGERSFFDTQMPASSMDIVVSQDTFLHASTEHDKAIKEAARVLKPGGIFVFSDLMSSDTVDKAKLAEMYKNLEIVGLASPASYKRWGDEFGLEFVEYDEYSSNFATHYASL 743
            AI ATA+G+Y++ NA N + +VWGG  IH+G Y  L  ++A L    RI++AS L  + LL + FP           N  P  S  T++DMGS YG  AR  AK+ GC+ +   CI +++     N  L+ AAG+   +IIPGE+S+FDT +P +  ++V SQD  LHA +E  +A+ EAAR+LKPGG  VF+D+M ++  D   L E+Y+ + +  L +P SY +W   +GL FVE+ + + +  THY S+
Sbjct:  123 AISATAKGWYNSDNAFNFYFKVWGGEHIHVGLYSKLNAEEAKLPVLDRIEKASILNAEELLARCFPASANGTNGTNGNGAPPTSESTMVDMGSGYGGSARLAAKTLGCKAIVVYCINVTSRENDVNRALSKAAGIENLVIIPGEKSYFDTGLPDACCEVVTSQDALLHAGSERHRAVGEAARLLKPGGRMVFNDVMQTNNADPKDLQEVYERVRLQDLGTPKSYAKWAASYGLTFVEFSDRTPDMKTHYESV 374
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BLAST of mRNA_H-elongata_contig779.15465.1 vs. uniprot
Match: A0A6H5L7A2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7A2_9PHAE)

HSP 1 Score: 205 bits (521), Expect = 5.660e-56
Identity = 104/252 (41.27%), Postives = 155/252 (61.51%), Query Frame = 3 
Query:   30 AIEATAQGYYDNPNAINVHKEVWGGITIHIGRYDLLKGKDANLEGKARIKRASELTTDMLLRKAFP-----------NDGPSPSGYTIMDMGSSYGHLARKVAKSYGCR---VVCIELSATATIENVKLTAAAGLSEKIIIPGERSFFDTQMPASSMDIVVSQDTFLHASTEHDKAIKEAARVLKPGGIFVFSDLMSSDTVDKAKLAEMYKNLEIVGLASPASYKRWGDEFGLEFVEYDEYSSNFATHYASL 743
            AI ATA+G+Y++ NA N + +VWGG  IH+G Y  L  ++A L    RIK+AS L  + LL + FP           N  P  S  T++DMGS YG  AR  AK+ GC+   V CI +++     N  L+ AAG+ + +IIPGE+S+FDT +P +  ++V SQD  LHA +E  +A+ EAAR+LKPGG  VF+D+M ++  D   L ++Y+ + +  L +P SY +W + +GL FVE+ + + +  THY S+
Sbjct:  180 AISATAEGWYNSDNAFNFYFKVWGGEHIHVGLYSKLNAEEAKLPVLDRIKKASILNAEELLARCFPASANGTNGTNGNGAPPTSESTMVDMGSGYGGSARLAAKTLGCKAMNVYCINVTSRENDVNRALSKAAGIEDLVIIPGEKSYFDTGLPDACCEVVTSQDALLHAGSERHRAVGEAARLLKPGGRMVFNDVMQTNHADPKDLKDVYERVRLQDLGTPKSYAKWAESYGLTFVEFSDRTPDMKTHYESV 431
[Close]
BLAST of mRNA_H-elongata_contig779.15465.1 vs. uniprot
Match: A0A6T8NTF3_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A6T8NTF3_HEMAN)

HSP 1 Score: 193 bits (490), Expect = 6.130e-54
Identity = 100/245 (40.82%), Postives = 154/245 (62.86%), Query Frame = 3 
Query:   42 TAQGYYDNPNAINVHKEVWGGITIHIGRYDLLKGKDANLEGKARIKRAS-ELTTDMLLRKAFPNDGPSPS---GYTIMDMGSSYGHLARKVAKSYGCRVVCIELSATATIENVKLTAAAGLSEKIIIPGERSFFDTQMPASSMDIVVSQDTFLHASTEHDKAIKEAARVLKPGGIFVFSDLMSSDTVDKAKLAE--MYKNLEIVGLASPASYKRWGDEFGLEFVEYDEYSSNFATHYASLVEVIK 758
            TAQ YYD+ +A   +K VWGG  IH+G YD+++ K   +E      +AS  L+T+ L  +      PS +   G  + DMG++YG  AR  A  YGC+V+C+E+S      N K TA AGL +K++IP E SFFDT+  ++SMD+VVSQD+ LHA +E  K I+EA+R+LK GG FVF+D+M SD+ D   LA   + K + +  + SP  YK+   + GL+FV++++ ++    HY ++ ++++
Sbjct:   33 TAQNYYDSDDAFIFYKHVWGGEAIHVGLYDVVQRKGEGIEADIEWSKASARLSTEQLFTQV-----PSQTLKEGMMVCDMGAAYGEAARHCASKYGCKVLCVEVSKKENEFNRKKTAEAGLQDKVLIPKELSFFDTEAESTSMDLVVSQDSLLHAGSERHKVIEEASRILKKGGYFVFTDIMQSDSCDPEVLASTGVLKRIHLENMGSPEVYKKHAADNGLKFVKFEDRTACIVHHYGTVSKILE 272
[Close]
BLAST of mRNA_H-elongata_contig779.15465.1 vs. uniprot
Match: L1JQG8_GUITC (Methyltransf_11 domain-containing protein n=2 Tax=Geminigeraceae TaxID=589343 RepID=L1JQG8_GUITC)

HSP 1 Score: 163 bits (413), Expect = 6.520e-43
Identity = 89/275 (32.36%), Postives = 142/275 (51.64%), Query Frame = 3 
Query:   54 YYDNPNAINVHKEVWGGITIHIGRYDL------LKGKDANLEGKARIKRASELTTDMLLRKAFPNDGPSPSGYT---IMDMGSSYGHLARKVAKSYGCRVVCIELSATATIENVKLTAAAGLSEKIIIPGERSFFDTQMPASSMDIVVSQDTFLHASTEHDKAIKEAARVLKPGGIFVFSDLMSSDTVDKAKLAEMYKNLEIVGLASPASYKRWGDEFG------LEFVEYDEYSSNFATHYASLVEVIKDIGRGVPLP*LDDSAVQCLREGCQA 833
            YYD  +A N +  +WGG   H+G Y        ++     ++G++       L ++  L K      P+  G +    MDMG++YG  AR ++K YGC+VVC+ELS      N++      + +KII+PGE SF DTQ  A   D  VS+D+ LHA       + EAARVL+ GG+FVFSD+M  D VD + L ++Y  + +  + SPA Y  W  + G       +   Y+++S   A HY  ++++++   R      + D  +  + +G +A
Sbjct:    4 YYDEGDAFNFYLTIWGGDHCHVGIYTAEEEAQDMQPPAGGVKGESTESDTILLASNRSLEKILELSKPAFEGRSEGLAMDMGAAYGGCARALSKKYGCKVVCVELSKRENEVNIQRNVELKMQDKIIVPGELSFLDTQQEAGVFDCCVSEDSILHAGKARPAVVAEAARVLRKGGLFVFSDIMQKDCVDTSTLKDVYDRIGLEDMGSPAKYIEWASQAGKLLASSFQLKRYEDFSPQIAVHYGKILKMLEGPTREKLRGKVSDEYIVSMMKGLRA 278
[Close]
BLAST of mRNA_H-elongata_contig779.15465.1 vs. uniprot
Match: A0A6H5KZ03_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ03_9PHAE)

HSP 1 Score: 155 bits (392), Expect = 8.580e-42
Identity = 83/145 (57.24%), Postives = 103/145 (71.03%), Query Frame = 3 
Query:   87 KEVWGGITIHIGRYDLLKGKDANLEGKARIKRASELTTDMLLRKAFPNDGPSPSG---YTIMDMGSSYGHLARKVAKSYGCRVVCIELSATATIENVKLTAAAGLSEKIIIPGERSFFDTQMPASSMDIVVSQDTFLHASTEHDK 512
            ++ WG   IHIGRYDLL   +  +  + RIKRA+ L+T  LL K FP   PSP G    T+MDMGS++G  AR  AK +GC VVCI++S      N KL+AAAGLS+KIIIPGERS+FDT+MPA+SMD V+SQD F HASTEH +
Sbjct:    3 QQAWGE-DIHIGRYDLLSMDELKMGPRERIKRATALSTRGLLGKVFP---PSPGGETTMTVMDMGSAHGSTARTAAKEHGCNVVCIDISRGFNTVNAKLSAAAGLSDKIIIPGERSYFDTEMPAASMDAVLSQDAFGHASTEHHR 143
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig779.15465.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LE22_ECTSI9.440e-7756.77Probable glycine-sarcosine methyltransferase n=1 T... [more]
A0A6H5KC33_9PHAE2.030e-6741.30Methyltransf_11 domain-containing protein n=2 Tax=... [more]
A0A835YZA4_9STRA5.980e-6446.50Putative sarcosine-dimethylglycine methyltransfera... [more]
D7G5Z7_ECTSI3.890e-5942.29Putative sarcosine-dimethylglycine methyltransfera... [more]
D7G7W9_ECTSI1.030e-5842.29Putative sarcosine-dimethylglycine methyltransfera... [more]
A0A6H5L6E6_9PHAE1.030e-5640.87Methyltransf_11 domain-containing protein n=1 Tax=... [more]
A0A6H5L7A2_9PHAE5.660e-5641.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6T8NTF3_HEMAN6.130e-5440.82Hypothetical protein n=1 Tax=Hemiselmis andersenii... [more]
L1JQG8_GUITC6.520e-4332.36Methyltransf_11 domain-containing protein n=2 Tax=... [more]
A0A6H5KZ03_9PHAE8.580e-4257.24Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig779contigH-elongata_contig779:4594..10660 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score220.3
Seed ortholog evalue7.8e-55
Seed eggNOG ortholog2880.D8LE22
EggNOG free text desc.Methyltransferase domain
EggNOG OGs2E18F@1,2S8KF@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons9
Model size1487
Cds size585
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931184.324928-UTR-H-elongata_contig779:4593..46851622931184.324928-UTR-H-elongata_contig779:4593..4685Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig779 4594..4685 +
1691679732.5730917-UTR-H-elongata_contig779:4593..46851691679732.5730917-UTR-H-elongata_contig779:4593..4685Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig779 4594..4685 +
1622931184.3447025-UTR-H-elongata_contig779:4852..49631622931184.3447025-UTR-H-elongata_contig779:4852..4963Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig779 4853..4963 +
1691679732.5837142-UTR-H-elongata_contig779:4852..49631691679732.5837142-UTR-H-elongata_contig779:4852..4963Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig779 4853..4963 +
1622931184.463805-UTR-H-elongata_contig779:9283..93711622931184.463805-UTR-H-elongata_contig779:9283..9371Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig779 9284..9371 +
1691679732.643968-UTR-H-elongata_contig779:9283..93711691679732.643968-UTR-H-elongata_contig779:9283..9371Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig779 9284..9371 +
1622931184.4812682-UTR-H-elongata_contig779:10012..102221622931184.4812682-UTR-H-elongata_contig779:10012..10222Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig779 10013..10222 +
1691679732.6519992-UTR-H-elongata_contig779:10012..102221691679732.6519992-UTR-H-elongata_contig779:10012..10222Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig779 10013..10222 +
1622931184.49843-UTR-H-elongata_contig779:10259..106601622931184.49843-UTR-H-elongata_contig779:10259..10660Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig779 10260..10660 +
1691679732.6598976-UTR-H-elongata_contig779:10259..106601691679732.6598976-UTR-H-elongata_contig779:10259..10660Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig779 10260..10660 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931184.366665-CDS-H-elongata_contig779:4963..50831622931184.366665-CDS-H-elongata_contig779:4963..5083Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig779 4964..5083 +
1691679732.5947108-CDS-H-elongata_contig779:4963..50831691679732.5947108-CDS-H-elongata_contig779:4963..5083Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig779 4964..5083 +
1622931184.381529-CDS-H-elongata_contig779:5356..54541622931184.381529-CDS-H-elongata_contig779:5356..5454Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig779 5357..5454 +
1691679732.6048791-CDS-H-elongata_contig779:5356..54541691679732.6048791-CDS-H-elongata_contig779:5356..5454Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig779 5357..5454 +
1622931184.393697-CDS-H-elongata_contig779:6329..65191622931184.393697-CDS-H-elongata_contig779:6329..6519Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig779 6330..6519 +
1691679732.6127012-CDS-H-elongata_contig779:6329..65191691679732.6127012-CDS-H-elongata_contig779:6329..6519Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig779 6330..6519 +
1622931184.4062622-CDS-H-elongata_contig779:6902..70311622931184.4062622-CDS-H-elongata_contig779:6902..7031Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig779 6903..7031 +
1691679732.6205409-CDS-H-elongata_contig779:6902..70311691679732.6205409-CDS-H-elongata_contig779:6902..7031Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig779 6903..7031 +
1622931184.424152-CDS-H-elongata_contig779:9221..92441622931184.424152-CDS-H-elongata_contig779:9221..9244Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig779 9222..9244 +
1691679732.6283727-CDS-H-elongata_contig779:9221..92441691679732.6283727-CDS-H-elongata_contig779:9221..9244Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig779 9222..9244 +
1622931184.4410758-CDS-H-elongata_contig779:9258..92831622931184.4410758-CDS-H-elongata_contig779:9258..9283Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig779 9259..9283 +
1691679732.6362245-CDS-H-elongata_contig779:9258..92831691679732.6362245-CDS-H-elongata_contig779:9258..9283Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig779 9259..9283 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig779.15465.1prot_H-elongata_contig779.15465.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig779 4964..9283 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig779.15465.1

>prot_H-elongata_contig779.15465.1 ID=prot_H-elongata_contig779.15465.1|Name=mRNA_H-elongata_contig779.15465.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=195bp
MLLRKAFPNDGPSPSGYTIMDMGSSYGHLARKVAKSYGCRVVCIELSATA
TIENVKLTAAAGLSEKIIIPGERSFFDTQMPASSMDIVVSQDTFLHASTE
HDKAIKEAARVLKPGGIFVFSDLMSSDTVDKAKLAEMYKNLEIVGLASPA
SYKRWGDEFGLEFVEYDEYSSNFATHYASLVEVIKDIGRGVPLP*
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mRNA from alignment at H-elongata_contig779:4594..10660+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig779.15465.1 ID=mRNA_H-elongata_contig779.15465.1|Name=mRNA_H-elongata_contig779.15465.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=6067bp|location=Sequence derived from alignment at H-elongata_contig779:4594..10660+ (Himanthalia elongata Himel1 dioecious)
AGGAATTGTCTACTAAGGGCGAAGTAGGCGCCATCGAGGCTACCGCCCAA
GGCTACTATGACAACCCGAACGCCATCAATGTTCATAAAGAGGTACTTCG
GTGAACAATTGTATTTCAGTTCCACCAGCGACTTTGATCACGTCTAGAGA
CGGACGAGGTGTTCAGTAATAGTTCAATGTAGCTCTTTCGCTCGCCAATC
ATAGTCAATTTTCAGCAAAATATCGTTCTAATCTCGCCTAAATCCAATCC
TGGTCACAGGTATGGGGGGGGATTACCATTCACATTGGCAGGTATGACCT
TCTCAAGGGCAAGGACGCCAACCTGGAGGGAAAGGCGCGCATTAAGCGTG
CTTCAGAGCTGACCACAGATATGTTATTGAGGAAGGCGTTTCCCAATGAC
GGCCCTTCTCCTAGCGGATACACCATTATGGATATGGGCTCTTCATACGG
CCACCTTGCGCGGAAAGTCGCCAAAAGCTACGGGTGCAGGGTAAACGTTT
TATGGAATCGATCGCGTCCCGGTCTAGCTGGACCAGAAAACTGGACCGAG
AATGTTTATCCAAACTTCTGTTGAGATCCGATCCTGCGCCACAATCTAAA
GTCCGATTTTACTTGGCCATAAATCAAGCATACTCTCAAGATTTCCGTTC
AATGTGCGTGCTCGAGTCATGCGTGATGTCGTTTTTTTATGTTTAGGGGG
CGTACTTTTGTTGCATCCTTACTATAAAATACATATTTTCGATTCAACCG
CCCTTCTCCAAAGGTGGTATGCATCGAACTGTCCGCCACGGCGACAATCG
AGAATGTAAAGCTCACCGCTGCTGCTGGCCTCTCGGAAAAGATCATCATT
CCCGGCGAAAGGTATGTTTCCTGCTATAATTTGCTCCGGGAAAGGGTGGA
GAGGCGGATGTAACGCCGATGAAGTACAAGTTTTATGTTGGATTTACTAC
CTCGTTTCGTGCAACTGTTGGAACAACGACGCCAGATGGGGGTCGACCCC
CCTGCCTCGAAAAAACCGTGTCCATGGCTAGATACCATGTGCTACCTTCG
TGCATTGTCGCATGTTTTTTTTCGCGGCACTTGACAACGCATATATCTTA
TACTTGAAATACTAGGAAAAAATGTCTCCAGTGGGAATCGACCCGGAACC
ATGTGTCTCTTCTGCGCTAAAAATGGTTCATGAAATTACTTGAACATGCA
TCACCCGTTACTCAAACTATATTAAGGGCTACTCGCCCAGTGTCGGCGGA
CGCTCGGTGGTGAATGAGATCTGTATGCAATTGCGCGAACTGATAAACTT
GGGATGGGTCGATGGCGGTTGACCGTAGAGATGGAAAATATCGTGGAAAC
CTGGAGAAACCAAAGGATTTCGAGAGAAAGCGCGAGATTTAGCCTAGGTA
AAAAGAATAAACAAGCTGACGCGGGACGGTACGGTCAAATCCGTCTCGCG
ACACCAAATTCTCAGGCGCAAACCGGGAGAGGGAATATGCATTTTCCCTG
TAAAGCTGACGACGCACAGGATTGGCAACCATATCATTTTGACCCATACC
TTGCTATATGTGATGCCCGCAAAAACACACATACATACACAAAGCCCGAT
CGCCTTTCGGAAATCGTGAACGTGATGGCTTGCAAATATTCGTTAAGTTT
AACACAATCGCTCGCCAACCCCTCATCCTTTCTGCTTTCTATATTTTCCC
CTGATTGTTTTTCTTCATTGTGGGAGAGAGGATCAGGTCCTTCTTTGATA
CCCAAATGCCCGCTTCTAGTATGGACATTGTCGTATCCCAAGACACTTTT
TTGCACGCTAGCACGGAGCACGACAAGGCAATCAAGGAAGCTGCTCGAGT
GCTCAAGCCGGGTGGTATCTTCGTTTTCAGCGATCTAATGAGTTCGGACA
CCGTTGATAAAGCCAAGCTCGCCGAGGTACGTTACATATTCCCAGTTATA
TTTATGCAGCATACTGTACACCTCACATTGCTTTTTATTTTATCTACCGT
GGGGTTTGTCAGCAACGTGGCGTTCTTGGACAAAGTTTGCTCGAAGTAAT
GAGTCCTTGACTATCTCGACTCGAGTAGTGGAAAAGGCAGTTCTGATCTT
CCGTGCTTCGAGCGTGAGTTGGTGTTAAGCATCGCGGGAAGAGCGTGCCG
CACGCTACGAAACGATTTTGGTTGCGATTTTTTAATTCAGCCACGGGAAC
GCATGGCAAAGCAGTGCCCCAGGGTACAGTATATCGTTATCTGCGCCATT
TCCCACCCTCATACCGCGTCTACAGCCCTTCCATATGTGTTTTATTTACC
CATATTCAGATGTACAAGAACCTGGAAATCGTCGGGTTGGCCAGCCCTGC
GTCGTACAAACGCTGGGGAGACGAGTTTGGCCTAGAATTTGTCGAGTACG
ACGAATACAGCTCCAACTTCGCCACACATTACGCCTCTGTAAGGACCGTT
TAATACCGATGATCGTGGTGAAAGTAGCACGATACGATATGAAGATATAG
AACGCACTTGTTCCTTGTGGTCTACACCATGTATACGTGCAATTATCTCT
CGGTTAGGTGGTAATTGTCTGGCCTGGATGCCATAATCGTATTCCTGATG
AATCCGAGTGACATATAGGTAAGGGCACCACGCTAGAATCGGTACACCGC
GCCATGTTTACGCTGTACGCGGTACGATTAAATGCACCAAACACCAAGAT
CCCTGACGCCACCAAAAACACTCTTGTTTGAAACATTTGTTCGACATTGT
GGCCAAAGTGCAGTCGCTCCTCCATTTTTGTTTTATATATATTGCATTCT
CTGATCACACGACACCACGCAAGGGTAGCACAGTATGACAAAACCCTATC
ATACCGAATCCAGCGTAGAAAGGGTACCGGTACACTGCAAGCAGTCTAAA
CAATTTGGCCATCACCATATATAGCATAGACCTCCACCGCGTCTAGCCTA
GATATACCACTTCTGTACCGATTTGAGGCAAAATCTCGCTACAGAAAGTC
TTTGCGAATACGCAACCATTCGTCCCTACAGAATACTTTTAAAGGAACAT
TTCAAGACAGCGACCAACCGCCTGGAAACCACCCCCGAAAACTTGGCGCG
GACCAGACGCTGCATATTCAAGGAGCACAGACCCAGCAATTAGTTCATCA
GTGATTCAGACCCAACAATTCATCAGTCATGCATTATTAGCCTTCACTGC
ACAAATGGCTGGGCCGTCGAAGATGATAATAGTCGAATCATTCACAGCCG
CGCCTGTGCCTAATGTACAACAAGTGAGATCAAAGGATGCGCCGTCGTCT
TAGTTAGGTTATAACCTCAGCCACACGCAGTCATCAAGTGGCTACAAAAT
ACACCCCTATTGATAGATCACTCTGCTTCCACGAAAAAGGTACCCAAGCG
AGGCCCTCCGTTTACAGAAGTTGTAAATGAACGCAACAGCAGTGACTCAT
GCGAAGATATTTTACTCATAATTCTATTATATGATTTGAGTATATTAGTG
TGAGCAGAAGCAGTATAGGTACAAACGGTTGCTGTTGTATTCATTGACAA
CTTCTGGGAACGAAGGGCCTCGCGTATTGGGTGCCTTTTTCGTGGAGGGT
GATCTATCAATAGGGGTCTTTTGTAGCCACTTGATGACTCCGTGTGACTG
AAGCTATTACCTTACTAAGACGACGGTGAATCATTTGATCCCCCTCGCTG
TACATTAGGCGCAGGCGCGGCTGTGAATGATTCGACTATTATCATCTTCG
ACGGCCATGCCATCTGTGCAATGAAGGCTAATAATGCATGACTGGTGAAT
TGCTGGGTCTGAAAGGCTGATGAATGAAATGCTCGGTCTGTGATCTTTAA
ATATGCAGCGTCTGGTTCGCGTCAAGTTTTCGGGGGTGGTTTCCCGGCGG
TTGATCGTTGTCGTGAAATGTTCCTTCAAAAGTATTCTGTAGGGACGAAT
ATTTCTGTATTCGCGAAGACTTTCTCTATCGAGGTTTGGTCTCAAATCAG
TACAAAAGTGGTATATCTAGGCTATACGTGGTGAAGTTCTATTCTATATA
CGGTGATGGCCAAATTGTGTTTTGTCATGCTGTACCACCCTTGCGTGGTG
TTGTGTGATGGGAGAATGCAAAATATATATATAAACATTGAAGGAGCGGT
TGCCTGTGCACTTTGGCCACAACATGGCGAGCACATTTAAAAAAAAAATG
TTTTTGGTGGCGCCCGGGACCTTACCCTTTGGTGCATTTAATTGTACCGC
GTGAAGCGTAAAAGTGGCGTTCTAGCGTAGTGCTCTATAGGTAAAGTAGA
AACCGCAGTATTTTACCTGCTACAGCGACGAAGTTGTGCTCTGATAACCC
AGTAGGCCCCTCGACAAAAATGCCGAAAAATCGACACATGGTTTTGCTTT
AGGGCTTCGTCACTCCACGTCAGTAATTGCACTCTTTTGCGAATGTACAA
CGAAAACCCACTGGAGTATCCAAGGGTATAACCCGCTCAGCGGCCCAAGC
TAGTAGTGCAGACTTACGCAATGTACCAGTCACAGTTTCCGCAGCGCACA
TCATAGATTGTGCACCCCCTTAACGTGTACGCGTTCGTGATTGCATGACA
AACCTGGGGGTGTCACGCACACTCACAGCTCGTGGAGGTGATCAAAGATA
TGCACGGAAGTATAGCGGGCGTGGAGTCCCGCTACCTTGATTGGATGACA
GTGCGGTACAGTGCCTGCGCGAAGGCTGCCAAGCAGGGCCTCTTGTCGTG
CGGGCTGATGGTTTTCAAGAAGAAGGTGGTGAGTCTTCACTGTATTTCTG
TCCCGCACTGTTAGCTACCGATGAGATTCGCAGCTGGATAAGATTTCGTG
GGGACGGTAGAATATCAAGCCCCAAATATGTCACATATACTTGCGTACAC
GACTTCATCACTTCCAGCTATATATACCTAACAGTGTACTACTTTGCGGA
AACCGGGTTGAAATACATTATTTACAGGGATTGAAGAGGGCACGTCCTGG
TCTGATAGAGCCATTAGACATTATACTTGGTTTGTGCCGAACCTTGAAAA
GAAATATATAAGAAAATGTCTCGGTCGTCTTGGCGGCGTAGCGTATAGGG
ACTGGATGCGGTACATAGGTACACGGGACTTTCAAACGATCATGTCCATT
TGAACAAAAATCGACAAAAAAATGAAACGATGTCGGAAAAACTATGGAGC
TTAAGACGTTATTCGTAAAGCGTACACTTACGTTTTTACTTGTATACTGA
AAAGTTCTACATATATGCATGTTGTTGAGGGTGTGTAGAGCTCGAACCTC
TCTCAAGTTCATCGAACGTATATTAATAGTTGGGGTTTGATGCTAAATTC
GTAGAGGATAGCCAAGAAGCCGATTATTGACCCCTCTTTCGATTGTGCAT
CCCATTTTTATTCATTCAGGAACAGGAATGATCCGTCGCTGGAATAGCGA
GGAAACAATTTTCCACAGCTTAATTGCTCACATGGAGAAATATTCGTGGT
GAGGGGGACATCGGTTCAAACCATAGAATGGGTATCAGCAAACGGGTCAT
TCCCCGTTGCCTGTGCAGGTACGGATACAATTGTACGTGACGAACATACG
CTGATGACTTCGTATAACTTAACTCAAACGTGCGAAGACTAGAGTAGGGG
GGGGGGGTATATTTAGGTCACGAAGTGCTCATATTAGTCCTTACTCAAGG
TGGCACACCTTATGATGAGGCGATCAGGACTTCATACAATATTTGAGCCA
TGTTGGAGCTACTTCTTGTCTGTCTACATTTGTTTTCTGCGAGTGGAAAC
TCGTTATGTACGTGCTCCGTTATGCACACTTGCCGGTCGAGGGATGTTTT
ACTCTCAGAGCTGGATTTTGTGTCTAAGAGTACGGGGAGCACTTCCGGTC
AGCCTTAAGCTGTTTTAGCATAGTACAATTGTCATCGAGTGGCAATGGTG
GAAGTAATGAAGATATTGGAGATAGATTGAGATTACGCCTGCCCGTATTA
GAGCTGTTTTTTGTGCGCCTCTGATTCAAGCTTTCTTGTGATGATAGTCT
TTTCATGAGCAGTTGGC
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Coding sequence (CDS) from alignment at H-elongata_contig779:4594..10660+

>mRNA_H-elongata_contig779.15465.1 ID=mRNA_H-elongata_contig779.15465.1|Name=mRNA_H-elongata_contig779.15465.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1170bp|location=Sequence derived from alignment at H-elongata_contig779:4594..10660+ (Himanthalia elongata Himel1 dioecious)
ATGTTATTGAGGAAGGCGTTTCCCAATGACGGCCCTTCTCCTAGCGGATA
CACCATTATGGATATGGGCTCTTCATACGGCCACCTTGCGCGGAAAGTCG
CCAAAAGCTACGGGTGCAGGATGTTATTGAGGAAGGCGTTTCCCAATGAC
GGCCCTTCTCCTAGCGGATACACCATTATGGATATGGGCTCTTCATACGG
CCACCTTGCGCGGAAAGTCGCCAAAAGCTACGGGTGCAGGGTGGTATGCA
TCGAACTGTCCGCCACGGCGACAATCGAGAATGTAAAGCTCACCGCTGCT
GCTGGCCTCTCGGAAAAGATCATCATTCCCGGCGAAAGGTGGTATGCATC
GAACTGTCCGCCACGGCGACAATCGAGAATGTAAAGCTCACCGCTGCTGC
TGGCCTCTCGGAAAAGATCATCATTCCCGGCGAAAGGTCCTTCTTTGATA
CCCAAATGCCCGCTTCTAGTATGGACATTGTCGTATCCCAAGACACTTTT
TTGCACGCTAGCACGGAGCACGACAAGGCAATCAAGGAAGCTGCTCGAGT
GCTCAAGCCGGGTGGTATCTTCGTTTTCAGCGATCTAATGAGTTCGGACA
CCGTTGATAAAGCCAAGCTCGCCGAGGTCCTTCTTTGATACCCAAATGCC
CGCTTCTAGTATGGACATTGTCGTATCCCAAGACACTTTTTTGCACGCTA
GCACGGAGCACGACAAGGCAATCAAGGAAGCTGCTCGAGTGCTCAAGCCG
GGTGGTATCTTCGTTTTCAGCGATCTAATGAGTTCGGACACCGTTGATAA
AGCCAAGCTCGCCGAGATGTACAAGAACCTGGAAATCGTCGGGTTGGCCA
GCCCTGCGTCGTACAAACGCTGGGGAGACGAGTTTGGCCTAGAATTTGTC
GAGTACGACGAATACAGCTCCAACTTCGCCACACATTACGCCTCTATGTA
CAAGAACCTGGAAATCGTCGGGTTGGCCAGCCCTGCGTCGTACAAACGCT
GGGGAGACGAGTTTGGCCTAGAATTTGTCGAGTACGACGAATACAGCTCC
AACTTCGCCACACATTACGCCTCTCTCGTGGAGGTGATCAAAGATATCTC
GTGGAGGTGATCAAAGATATCGGGCGTGGAGTCCCGCTACCTTGACGGGC
GTGGAGTCCCGCTACCTTGA
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